RNA–Protein interactions for RNA: ENST00000317610.11

RTN4-201, Transcript of reticulon 4, humanhuman

TSL 1 (best) BASIC

Gene RTN4, Length 2,333 nt, Biotype protein coding, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN4-201ENST00000317610 SERHLQ9NQF3 203 aa18.68■□□□□ 0.58
RTN4-201ENST00000317610 FARSBQ9NSD9 589 aaKnown RBP18.68■□□□□ 0.58
RTN4-201ENST00000317610 HTR3EA5X5Y0 456 aa18.68■□□□□ 0.58
RTN4-201ENST00000317610 TLR5O60602 858 aa18.68■□□□□ 0.58
RTN4-201ENST00000317610 MASP1P48740 699 aa18.68■□□□□ 0.58
RTN4-201ENST00000317610 PHC1P78364 1004 aa18.68■□□□□ 0.58
RTN4-201ENST00000317610 LAIR1Q6GTX8 287 aa18.68■□□□□ 0.58
RTN4-201ENST00000317610 GLMNQ92990 594 aa18.68■□□□□ 0.58
RTN4-201ENST00000317610 USP7Q93009 1102 aa18.68■□□□□ 0.58
RTN4-201ENST00000317610 FAM120BQ96EK7 910 aaKnown RBP18.68■□□□□ 0.58
RTN4-201ENST00000317610 HEPHQ9BQS7 1158 aa18.68■□□□□ 0.58
RTN4-201ENST00000317610 NTMT1Q9BV86 223 aa18.68■□□□□ 0.58
RTN4-201ENST00000317610 CD244Q9BZW8 370 aa18.68■□□□□ 0.58
RTN4-201ENST00000317610 ZFP14Q9HCL3 533 aa18.68■□□□□ 0.58
RTN4-201ENST00000317610 IL17CQ9P0M4 197 aa18.68■□□□□ 0.58
RTN4-201ENST00000317610 KIAA1522Q9P206 1035 aaPredicted RBP18.68■□□□□ 0.58
RTN4-201ENST00000317610 FNDC3AQ9Y2H6 1198 aaKnown RBP18.68■□□□□ 0.58
RTN4-201ENST00000317610 PKP3Q9Y446 797 aa18.68■□□□□ 0.58
RTN4-201ENST00000317610 U3KQV3 271 aa18.68■□□□□ 0.58
RTN4-201ENST00000317610 FFAR3O14843 346 aa18.67■□□□□ 0.58
RTN4-201ENST00000317610 WNT9AO14904 365 aa18.67■□□□□ 0.58
RTN4-201ENST00000317610 GPR42O15529 346 aa18.67■□□□□ 0.58
RTN4-201ENST00000317610 GPR39O43194 453 aa18.67■□□□□ 0.58
RTN4-201ENST00000317610 ULK1O75385 1050 aa18.67■□□□□ 0.58
RTN4-201ENST00000317610 NTRK1P04629 796 aa18.67■□□□□ 0.58
RTN4-201ENST00000317610 RPS3P23396 243 aaKnown RBP eCLIP18.67■□□□□ 0.583e-16■■□□□ 11.6
RTN4-201ENST00000317610 MAP2K4P45985 399 aa18.67■□□□□ 0.58
RTN4-201ENST00000317610 CLK3P49761 638 aaKnown RBP18.67■□□□□ 0.58
RTN4-201ENST00000317610 GBX1Q14549 363 aa18.67■□□□□ 0.58
RTN4-201ENST00000317610 PTPRRQ15256 657 aa18.67■□□□□ 0.58
RTN4-201ENST00000317610 CES5AQ6NT32 575 aa18.67■□□□□ 0.58
RTN4-201ENST00000317610 METTL2BQ6P1Q9 378 aaKnown RBP18.67■□□□□ 0.58
RTN4-201ENST00000317610 PLEKHG7Q6ZR37 379 aa18.67■□□□□ 0.58
RTN4-201ENST00000317610 RGL4Q8IZJ4 473 aa18.67■□□□□ 0.58
RTN4-201ENST00000317610 SPATA17Q96L03 361 aa18.67■□□□□ 0.58
RTN4-201ENST00000317610 FAM126AQ9BYI3 521 aaPredicted RBP18.67■□□□□ 0.58
RTN4-201ENST00000317610 ALOXE3Q9BYJ1 711 aa18.67■□□□□ 0.58
RTN4-201ENST00000317610 FRMPD3Q5JV73 1810 aa18.67■□□□□ 0.58
RTN4-201ENST00000317610 ILVBLA1L0T0 632 aa18.67■□□□□ 0.58
RTN4-201ENST00000317610 MANBAO00462 879 aa18.67■□□□□ 0.58
RTN4-201ENST00000317610 SYN3O14994 580 aa18.67■□□□□ 0.58
RTN4-201ENST00000317610 MAN1A2O60476 641 aa18.67■□□□□ 0.58
RTN4-201ENST00000317610 FMO3P31513 532 aa18.67■□□□□ 0.58
RTN4-201ENST00000317610 PIK3CGP48736 1102 aa18.67■□□□□ 0.58
RTN4-201ENST00000317610 MVKQ03426 396 aa18.67■□□□□ 0.58
RTN4-201ENST00000317610 CLCA4Q14CN2 919 aa18.67■□□□□ 0.58
RTN4-201ENST00000317610 CARD16Q5EG05 197 aa18.67■□□□□ 0.58
RTN4-201ENST00000317610 KDM4DQ6B0I6 523 aa18.67■□□□□ 0.58
RTN4-201ENST00000317610 CERS6Q6ZMG9 384 aa18.67■□□□□ 0.58
RTN4-201ENST00000317610 HOMEZQ8IX15 550 aa18.67■□□□□ 0.58
RTN4-201ENST00000317610 OPTCQ9UBM4 332 aa18.67■□□□□ 0.58
RTN4-201ENST00000317610 KLQ9UEF7 1012 aa18.67■□□□□ 0.58
RTN4-201ENST00000317610 ZNF490Q9ULM2 529 aaPredicted RBP18.67■□□□□ 0.58
RTN4-201ENST00000317610 ARVCFO00192 962 aa18.66■□□□□ 0.58
RTN4-201ENST00000317610 PER2O15055 1255 aa18.66■□□□□ 0.58
RTN4-201ENST00000317610 SEC22BO75396 215 aa18.66■□□□□ 0.58
RTN4-201ENST00000317610 ARHGEF15O94989 841 aa18.66■□□□□ 0.58
RTN4-201ENST00000317610 EBLN1P0CF75 366 aa18.66■□□□□ 0.58
RTN4-201ENST00000317610 BCKDHAP12694 445 aa18.66■□□□□ 0.58
RTN4-201ENST00000317610 PTPN6P29350 595 aa18.66■□□□□ 0.58
RTN4-201ENST00000317610 HOXD12P35452 270 aa18.66■□□□□ 0.58
RTN4-201ENST00000317610 VBP1P61758 197 aa18.66■□□□□ 0.58
RTN4-201ENST00000317610 ABHD18Q0P651 414 aa18.66■□□□□ 0.58
RTN4-201ENST00000317610 MRPL58Q14197 206 aaKnown RBP18.66■□□□□ 0.58
RTN4-201ENST00000317610 CTXN3Q4LDR2 81 aa18.66■□□□□ 0.58
RTN4-201ENST00000317610 PAGE2BQ5JRK9 111 aa18.66■□□□□ 0.58
RTN4-201ENST00000317610 C9orf131Q5VYM1 1079 aa18.66■□□□□ 0.58
RTN4-201ENST00000317610 GLB1LQ6UWU2 654 aa18.66■□□□□ 0.58
RTN4-201ENST00000317610 SNX20Q7Z614 316 aa18.66■□□□□ 0.58
RTN4-201ENST00000317610 ADCK1Q86TW2 530 aa18.66■□□□□ 0.58
RTN4-201ENST00000317610 SNX29P2Q8IUI4 249 aa18.66■□□□□ 0.58
RTN4-201ENST00000317610 ZDHHC21Q8IVQ6 265 aa18.66■□□□□ 0.58
RTN4-201ENST00000317610 TRPV1Q8NER1 839 aa18.66■□□□□ 0.58
RTN4-201ENST00000317610 ITCHQ96J02 903 aa18.66■□□□□ 0.58
RTN4-201ENST00000317610 B3GALT6Q96L58 329 aa18.66■□□□□ 0.58
RTN4-201ENST00000317610 BARD1Q99728 777 aaKnown RBP18.66■□□□□ 0.58
RTN4-201ENST00000317610 XRN2Q9H0D6 950 aaKnown RBP eCLIP18.66■□□□□ 0.584e-7■■■■■ 30.7
RTN4-201ENST00000317610 SCN3BQ9NY72 215 aa18.66■□□□□ 0.58
RTN4-201ENST00000317610 TSR3Q9UJK0 312 aaKnown RBP18.66■□□□□ 0.58
RTN4-201ENST00000317610 TTC34A8MYJ7 566 aa18.66■□□□□ 0.58
RTN4-201ENST00000317610 CLDN11O75508 207 aa18.66■□□□□ 0.58
RTN4-201ENST00000317610 GUCA1CO95843 209 aa18.66■□□□□ 0.58
RTN4-201ENST00000317610 RGS4P49798 205 aa18.66■□□□□ 0.58
RTN4-201ENST00000317610 DAPP51397 102 aa18.66■□□□□ 0.58
RTN4-201ENST00000317610 RPS24P62847 133 aaKnown RBP18.66■□□□□ 0.58
RTN4-201ENST00000317610 BCL2A1Q16548 175 aa18.66■□□□□ 0.58
RTN4-201ENST00000317610 INAVAQ3KP66 663 aa18.66■□□□□ 0.58
RTN4-201ENST00000317610 NCEH1Q6PIU2 408 aa18.66■□□□□ 0.58
RTN4-201ENST00000317610 SVOPQ8N4V2 548 aa18.66■□□□□ 0.58
RTN4-201ENST00000317610 CIPCQ9C0C6 399 aa18.66■□□□□ 0.58
RTN4-201ENST00000317610 SLIRPQ9GZT3 109 aaKnown RBP18.66■□□□□ 0.58
RTN4-201ENST00000317610 ANKHQ9HCJ1 492 aa18.66■□□□□ 0.58
RTN4-201ENST00000317610 ANGPTL3Q9Y5C1 460 aa18.66■□□□□ 0.58
RTN4-201ENST00000317610 GPC6Q9Y625 555 aaPredicted RBP18.66■□□□□ 0.58
RTN4-201ENST00000317610 TTC36A6NLP5 189 aa18.65■□□□□ 0.58
RTN4-201ENST00000317610 MT-ND2P03891 347 aa18.65■□□□□ 0.58
RTN4-201ENST00000317610 ST13P50502 369 aaKnown RBP18.65■□□□□ 0.58
RTN4-201ENST00000317610 HNRNPFP52597 415 aaKnown RBP18.65■□□□□ 0.58
RTN4-201ENST00000317610 CLDN8P56748 225 aa18.65■□□□□ 0.58
RTN4-201ENST00000317610 FADDQ13158 208 aa18.65■□□□□ 0.58
Retrieved 100 of 20,778 RNA–protein pairs in 32.7 ms