RNA–Protein interactions for RNA: ENST00000309428.9

RETREG3-201, Transcript of reticulophagy regulator family member 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene RETREG3, Length 3,759 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RETREG3-201ENST00000309428 CSF2P04141 144 aa12.4□□□□□ -0.42
RETREG3-201ENST00000309428 FGF1P05230 155 aa12.4□□□□□ -0.42
RETREG3-201ENST00000309428 ENO2P09104 434 aaPredicted RBP12.4□□□□□ -0.42
RETREG3-201ENST00000309428 ATF6P18850 670 aa12.4□□□□□ -0.42
RETREG3-201ENST00000309428 PPM1FP49593 454 aaPredicted RBP12.4□□□□□ -0.42
RETREG3-201ENST00000309428 CD47Q08722 323 aa12.4□□□□□ -0.42
RETREG3-201ENST00000309428 CRY1Q16526 586 aa12.4□□□□□ -0.42
RETREG3-201ENST00000309428 DDX53Q86TM3 631 aaKnown RBP12.4□□□□□ -0.42
RETREG3-201ENST00000309428 BRSK1Q8TDC3 778 aa12.4□□□□□ -0.42
RETREG3-201ENST00000309428 SELENOMQ8WWX9 145 aa12.4□□□□□ -0.42
RETREG3-201ENST00000309428 ING5Q8WYH8 240 aa12.4□□□□□ -0.42
RETREG3-201ENST00000309428 TOP1MTQ969P6 601 aa12.4□□□□□ -0.42
RETREG3-201ENST00000309428 ACAT2Q9BWD1 397 aa12.4□□□□□ -0.42
RETREG3-201ENST00000309428 IPPKQ9H8X2 491 aa12.4□□□□□ -0.42
RETREG3-201ENST00000309428 TREX1Q9NSU2 369 aa12.4□□□□□ -0.42
RETREG3-201ENST00000309428 ARL15Q9NXU5 204 aa12.4□□□□□ -0.42
RETREG3-201ENST00000309428 PADI4Q9UM07 663 aa12.4□□□□□ -0.42
RETREG3-201ENST00000309428 SCML2Q9UQR0 700 aa12.4□□□□□ -0.42
RETREG3-201ENST00000309428 PCDHGA8Q9Y5G5 932 aa12.4□□□□□ -0.42
RETREG3-201ENST00000309428 NINQ8N4C6 2090 aa12.4□□□□□ -0.42
RETREG3-201ENST00000309428 H3BN98 237 aa12.4□□□□□ -0.42
RETREG3-201ENST00000309428 LZTS3O60299 673 aaPredicted RBP12.4□□□□□ -0.42
RETREG3-201ENST00000309428 ADAMTS4O75173 837 aa12.4□□□□□ -0.42
RETREG3-201ENST00000309428 ULK1O75385 1050 aa12.4□□□□□ -0.42
RETREG3-201ENST00000309428 GBAP04062 536 aa12.4□□□□□ -0.42
RETREG3-201ENST00000309428 CD1DP15813 335 aa12.4□□□□□ -0.42
RETREG3-201ENST00000309428 MYF6P23409 242 aa12.4□□□□□ -0.42
RETREG3-201ENST00000309428 HLCSP50747 726 aa12.4□□□□□ -0.42
RETREG3-201ENST00000309428 CSTF3Q12996 717 aaKnown RBP12.4□□□□□ -0.42
RETREG3-201ENST00000309428 MRPL28Q13084 256 aaKnown RBP12.4□□□□□ -0.42
RETREG3-201ENST00000309428 APCDD1Q8J025 514 aa12.4□□□□□ -0.42
RETREG3-201ENST00000309428 SCML4Q8N228 414 aa12.4□□□□□ -0.42
RETREG3-201ENST00000309428 GFM1Q96RP9 751 aaKnown RBP12.4□□□□□ -0.42
RETREG3-201ENST00000309428 LRRC3Q9BY71 257 aa12.4□□□□□ -0.42
RETREG3-201ENST00000309428 INTS10Q9NVR2 710 aaKnown RBP12.4□□□□□ -0.42
RETREG3-201ENST00000309428 COQ3Q9NZJ6 369 aa12.4□□□□□ -0.42
RETREG3-201ENST00000309428 CFAP97Q9P2B7 532 aa12.4□□□□□ -0.42
RETREG3-201ENST00000309428 MYOFQ9NZM1 2061 aa12.4□□□□□ -0.42
RETREG3-201ENST00000309428 LOC100130705A0A1B0GUX0 176 aa12.4□□□□□ -0.43
RETREG3-201ENST00000309428 TRIM64CA6NLI5 447 aa12.4□□□□□ -0.43
RETREG3-201ENST00000309428 SLC7A4O43246 635 aa12.4□□□□□ -0.43
RETREG3-201ENST00000309428 SERPINB7O75635 380 aa12.4□□□□□ -0.43
RETREG3-201ENST00000309428 GALTP07902 379 aa12.4□□□□□ -0.43
RETREG3-201ENST00000309428 ALOX5P09917 674 aa12.4□□□□□ -0.43
RETREG3-201ENST00000309428 HOXD8P13378 290 aaPredicted RBP12.4□□□□□ -0.43
RETREG3-201ENST00000309428 RGS4P49798 205 aa12.4□□□□□ -0.43
RETREG3-201ENST00000309428 FKBP1BP68106 108 aa12.4□□□□□ -0.43
RETREG3-201ENST00000309428 ILF2Q12905 390 aaKnown RBP12.4□□□□□ -0.43
RETREG3-201ENST00000309428 GTDC1Q4AE62 458 aa12.4□□□□□ -0.43
RETREG3-201ENST00000309428 SYVN1Q86TM6 617 aa12.4□□□□□ -0.43
RETREG3-201ENST00000309428 ADGRG5Q8IZF4 528 aa12.4□□□□□ -0.43
RETREG3-201ENST00000309428 ANKFN1Q8N957 763 aa12.4□□□□□ -0.43
RETREG3-201ENST00000309428 WFDC5Q8TCV5 224 aa12.4□□□□□ -0.43
RETREG3-201ENST00000309428 BCL7CQ8WUZ0 217 aaPredicted RBP12.4□□□□□ -0.43
RETREG3-201ENST00000309428 KCNN1Q92952 543 aa12.4□□□□□ -0.43
RETREG3-201ENST00000309428 SLCO4A1Q96BD0 722 aa12.4□□□□□ -0.43
RETREG3-201ENST00000309428 ZNF347Q96SE7 839 aa12.4□□□□□ -0.43
RETREG3-201ENST00000309428 ADGRE3Q9BY15 652 aa12.4□□□□□ -0.43
RETREG3-201ENST00000309428 TOR4AQ9NXH8 423 aa12.4□□□□□ -0.43
RETREG3-201ENST00000309428 ZNF221Q9UK13 617 aa12.4□□□□□ -0.43
RETREG3-201ENST00000309428 PTBP2Q9UKA9 531 aaKnown RBP12.4□□□□□ -0.43
RETREG3-201ENST00000309428 A0A1W2PP18 115 aa12.39□□□□□ -0.43
RETREG3-201ENST00000309428 GNG14A0A1W2PPG7 69 aa12.39□□□□□ -0.43
RETREG3-201ENST00000309428 RASAL1O95294 804 aa12.39□□□□□ -0.43
RETREG3-201ENST00000309428 DNTTP04053 509 aa12.39□□□□□ -0.43
RETREG3-201ENST00000309428 HIST1H2AGP0C0S8 130 aaPredicted RBP12.39□□□□□ -0.43
RETREG3-201ENST00000309428 RAP2AP10114 183 aa12.39□□□□□ -0.43
RETREG3-201ENST00000309428 BMP2P12643 396 aa12.39□□□□□ -0.43
RETREG3-201ENST00000309428 HIST1H2ADP20671 130 aa12.39□□□□□ -0.43
RETREG3-201ENST00000309428 ALDH3B2P48448 385 aa12.39□□□□□ -0.43
RETREG3-201ENST00000309428 ATP6V0D1P61421 351 aa12.39□□□□□ -0.43
RETREG3-201ENST00000309428 ABRQ12979 859 aa12.39□□□□□ -0.43
RETREG3-201ENST00000309428 SF3B4Q15427 424 aaKnown RBP eCLIP12.39□□□□□ -0.434e-8■■□□□ 12.6
RETREG3-201ENST00000309428 TBPL2Q6SJ96 375 aa12.39□□□□□ -0.43
RETREG3-201ENST00000309428 SERPINA9Q86WD7 417 aa12.39□□□□□ -0.43
RETREG3-201ENST00000309428 ARMC8Q8IUR7 673 aa12.39□□□□□ -0.43
RETREG3-201ENST00000309428 ADGRG2Q8IZP9 1017 aa12.39□□□□□ -0.43
RETREG3-201ENST00000309428 TRUB1Q8WWH5 349 aaKnown RBP12.39□□□□□ -0.43
RETREG3-201ENST00000309428 HIST1H2AHQ96KK5 128 aa12.39□□□□□ -0.43
RETREG3-201ENST00000309428 TSGA13Q96PP4 275 aa12.39□□□□□ -0.43
RETREG3-201ENST00000309428 YME1L1Q96TA2 773 aa12.39□□□□□ -0.43
RETREG3-201ENST00000309428 CGREF1Q99674 301 aa12.39□□□□□ -0.43
RETREG3-201ENST00000309428 HIST1H2AJQ99878 128 aa12.39□□□□□ -0.43
RETREG3-201ENST00000309428 H2AFJQ9BTM1 129 aa12.39□□□□□ -0.43
RETREG3-201ENST00000309428 WBP11Q9Y2W2 641 aaKnown RBP12.39□□□□□ -0.43
RETREG3-201ENST00000309428 ZNF487B1APH4 448 aa12.39□□□□□ -0.43
RETREG3-201ENST00000309428 M0QZQ0 153 aa12.39□□□□□ -0.43
RETREG3-201ENST00000309428 CXCR6O00574 342 aa12.39□□□□□ -0.43
RETREG3-201ENST00000309428 MMP2P08253 660 aa12.39□□□□□ -0.43
RETREG3-201ENST00000309428 STC1P52823 247 aa12.39□□□□□ -0.43
RETREG3-201ENST00000309428 IL10RBQ08334 325 aa12.39□□□□□ -0.43
RETREG3-201ENST00000309428 RFTN1Q14699 578 aaPredicted RBP12.39□□□□□ -0.43
RETREG3-201ENST00000309428 PDZK1Q5T2W1 519 aa12.39□□□□□ -0.43
RETREG3-201ENST00000309428 ZNF605Q86T29 641 aa12.39□□□□□ -0.43
RETREG3-201ENST00000309428 ZDHHC21Q8IVQ6 265 aa12.39□□□□□ -0.43
RETREG3-201ENST00000309428 TMEM151AQ8N4L1 468 aa12.39□□□□□ -0.43
RETREG3-201ENST00000309428 KRTCAP2Q8N6L1 136 aa12.39□□□□□ -0.43
RETREG3-201ENST00000309428 APOLD1Q96LR9 279 aa12.39□□□□□ -0.43
RETREG3-201ENST00000309428 RANBP9Q96S59 729 aa12.39□□□□□ -0.43
RETREG3-201ENST00000309428 RBM4BQ9BQ04 359 aaKnown RBP12.39□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 26.8 ms