RNA–Protein interactions for RNA: ENST00000295550.8

COL6A3-201, Transcript of collagen type VI alpha 3 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL6A3, Length 10,749 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-201ENST00000295550 IL1R2P27930 398 aa9.69□□□□□ -0.86
COL6A3-201ENST00000295550 RGS8P57771 180 aaPredicted RBP9.69□□□□□ -0.86
COL6A3-201ENST00000295550 VLDLRP98155 873 aa9.69□□□□□ -0.86
COL6A3-201ENST00000295550 COMTD1Q86VU5 262 aa9.69□□□□□ -0.86
COL6A3-201ENST00000295550 CSGALNACT1Q8TDX6 532 aa9.69□□□□□ -0.86
COL6A3-201ENST00000295550 LRTM1Q9HBL6 345 aa9.69□□□□□ -0.86
COL6A3-201ENST00000295550 POLR3BQ9NW08 1133 aaPredicted RBP9.69□□□□□ -0.86
COL6A3-201ENST00000295550 DOCK9Q9BZ29 2069 aa9.69□□□□□ -0.86
COL6A3-201ENST00000295550 SCGB1D2O95969 90 aa9.69□□□□□ -0.86
COL6A3-201ENST00000295550 LCN1P31025 176 aa9.69□□□□□ -0.86
COL6A3-201ENST00000295550 L1CAMP32004 1257 aa9.69□□□□□ -0.86
COL6A3-201ENST00000295550 CDH13P55290 713 aa9.69□□□□□ -0.86
COL6A3-201ENST00000295550 ZNF155Q12901 538 aaPredicted RBP9.69□□□□□ -0.86
COL6A3-201ENST00000295550 PARP15Q460N3 678 aa9.69□□□□□ -0.86
COL6A3-201ENST00000295550 SGCDQ92629 289 aa9.69□□□□□ -0.86
COL6A3-201ENST00000295550 COQ8BQ96D53 544 aa9.69□□□□□ -0.86
COL6A3-201ENST00000295550 CXorf40BQ96DE9 158 aa9.69□□□□□ -0.86
COL6A3-201ENST00000295550 GMFGO60234 142 aa9.69□□□□□ -0.86
COL6A3-201ENST00000295550 GRIN3BO60391 1043 aa9.69□□□□□ -0.86
COL6A3-201ENST00000295550 PEX6Q13608 980 aa9.69□□□□□ -0.86
COL6A3-201ENST00000295550 RALGPS1Q5JS13 557 aa9.69□□□□□ -0.86
COL6A3-201ENST00000295550 ANO7Q6IWH7 933 aa9.69□□□□□ -0.86
COL6A3-201ENST00000295550 TXLNGYQ9BZA5 131 aa9.69□□□□□ -0.86
COL6A3-201ENST00000295550 AGO3Q9H9G7 860 aaKnown RBP9.69□□□□□ -0.86
COL6A3-201ENST00000295550 PLK2Q9NYY3 685 aa9.69□□□□□ -0.86
COL6A3-201ENST00000295550 CPA4Q9UI42 421 aa9.69□□□□□ -0.86
COL6A3-201ENST00000295550 CLDN5O00501 218 aa9.69□□□□□ -0.86
COL6A3-201ENST00000295550 UGT2B4P06133 528 aa9.69□□□□□ -0.86
COL6A3-201ENST00000295550 LPOP22079 712 aaPredicted RBP9.69□□□□□ -0.86
COL6A3-201ENST00000295550 C9orf131Q5VYM1 1079 aa9.69□□□□□ -0.86
COL6A3-201ENST00000295550 CFAP206Q8IYR0 622 aa9.69□□□□□ -0.86
COL6A3-201ENST00000295550 NSMCE3Q96MG7 304 aa9.69□□□□□ -0.86
COL6A3-201ENST00000295550 PDGFDQ9GZP0 370 aaPredicted RBP9.69□□□□□ -0.86
COL6A3-201ENST00000295550 WDR55Q9H6Y2 383 aaPredicted RBP9.69□□□□□ -0.86
COL6A3-201ENST00000295550 ZFC3H1O60293 1989 aaKnown RBP9.69□□□□□ -0.86
COL6A3-201ENST00000295550 KCNU1A8MYU2 1149 aa9.69□□□□□ -0.86
COL6A3-201ENST00000295550 LCP2Q13094 533 aa9.69□□□□□ -0.86
COL6A3-201ENST00000295550 SEMA3AQ14563 771 aa9.69□□□□□ -0.86
COL6A3-201ENST00000295550 UBAP2Q5T6F2 1119 aaKnown RBP9.69□□□□□ -0.86
COL6A3-201ENST00000295550 RBFAQ8N0V3 343 aa9.69□□□□□ -0.86
COL6A3-201ENST00000295550 LMO3Q8TAP4 145 aa9.69□□□□□ -0.86
COL6A3-201ENST00000295550 CLP1Q92989 425 aaKnown RBP9.69□□□□□ -0.86
COL6A3-201ENST00000295550 HNRNPABQ99729 332 aaKnown RBP9.69□□□□□ -0.86
COL6A3-201ENST00000295550 SMIM28A0A1B0GU29 152 aa9.69□□□□□ -0.86
COL6A3-201ENST00000295550 SSX5O60225 188 aa9.69□□□□□ -0.86
COL6A3-201ENST00000295550 GPD2P43304 727 aa9.69□□□□□ -0.86
COL6A3-201ENST00000295550 GPR142Q7Z601 462 aa9.69□□□□□ -0.86
COL6A3-201ENST00000295550 BPIFB1Q8TDL5 484 aa9.69□□□□□ -0.86
COL6A3-201ENST00000295550 SLC7A6OSQ96CW6 309 aaPredicted RBP9.69□□□□□ -0.86
COL6A3-201ENST00000295550 NXPE2Q96DL1 559 aa9.69□□□□□ -0.86
COL6A3-201ENST00000295550 BRD7Q9NPI1 651 aa9.69□□□□□ -0.86
COL6A3-201ENST00000295550 PER2O15055 1255 aa9.69□□□□□ -0.86
COL6A3-201ENST00000295550 PRMT3O60678 531 aa9.69□□□□□ -0.86
COL6A3-201ENST00000295550 RPP40O75818 363 aaKnown RBP9.69□□□□□ -0.86
COL6A3-201ENST00000295550 KLF1Q13351 362 aaPredicted RBP9.69□□□□□ -0.86
COL6A3-201ENST00000295550 HSD17B12Q53GQ0 312 aa9.69□□□□□ -0.86
COL6A3-201ENST00000295550 FSTL5Q8N475 847 aaPredicted RBP9.69□□□□□ -0.86
COL6A3-201ENST00000295550 TWIST2Q8WVJ9 160 aa9.69□□□□□ -0.86
COL6A3-201ENST00000295550 MCCC1Q96RQ3 725 aaPredicted RBP9.69□□□□□ -0.86
COL6A3-201ENST00000295550 XRN2Q9H0D6 950 aaKnown RBP eCLIP9.69□□□□□ -0.86
COL6A3-201ENST00000295550 C3orf14Q9HBI5 128 aa9.69□□□□□ -0.86
COL6A3-201ENST00000295550 CENPBD1B2RD01 187 aa9.69□□□□□ -0.86
COL6A3-201ENST00000295550 hCG_2039718K7EN88 272 aa9.69□□□□□ -0.86
COL6A3-201ENST00000295550 MATN4O95460 622 aa9.69□□□□□ -0.86
COL6A3-201ENST00000295550 CSN2P05814 226 aa9.69□□□□□ -0.86
COL6A3-201ENST00000295550 PIRTP0C851 137 aa9.69□□□□□ -0.86
COL6A3-201ENST00000295550 GJA1P17302 382 aa9.69□□□□□ -0.86
COL6A3-201ENST00000295550 ERP29P30040 261 aaKnown RBP9.69□□□□□ -0.86
COL6A3-201ENST00000295550 SSR2P43308 183 aa9.69□□□□□ -0.86
COL6A3-201ENST00000295550 SLC10A7Q0GE19 358 aa9.69□□□□□ -0.86
COL6A3-201ENST00000295550 HECTD2Q5U5R9 776 aa9.69□□□□□ -0.86
COL6A3-201ENST00000295550 GRHL2Q6ISB3 625 aa9.69□□□□□ -0.86
COL6A3-201ENST00000295550 FAM43BQ6ZT52 329 aaPredicted RBP9.69□□□□□ -0.86
COL6A3-201ENST00000295550 METTL3Q86U44 580 aaKnown RBP9.69□□□□□ -0.86
COL6A3-201ENST00000295550 SLC37A3Q8NCC5 494 aa9.69□□□□□ -0.86
COL6A3-201ENST00000295550 ZNF717Q9BY31 904 aaPredicted RBP9.69□□□□□ -0.86
COL6A3-201ENST00000295550 HIPK3Q9H422 1215 aa9.69□□□□□ -0.86
COL6A3-201ENST00000295550 OXSMQ9NWU1 459 aa9.69□□□□□ -0.86
COL6A3-201ENST00000295550 POMPQ9Y244 141 aa9.69□□□□□ -0.86
COL6A3-201ENST00000295550 TEX264Q9Y6I9 313 aa9.69□□□□□ -0.86
COL6A3-201ENST00000295550 C9IYK1 514 aa9.68□□□□□ -0.86
COL6A3-201ENST00000295550 NOBOXO60393 691 aa9.68□□□□□ -0.86
COL6A3-201ENST00000295550 SLC6A4P31645 630 aa9.68□□□□□ -0.86
COL6A3-201ENST00000295550 GJA9P57773 515 aa9.68□□□□□ -0.86
COL6A3-201ENST00000295550 GNA12Q03113 381 aa9.68□□□□□ -0.86
COL6A3-201ENST00000295550 ARL13AQ5H913 290 aaPredicted RBP9.68□□□□□ -0.86
COL6A3-201ENST00000295550 CYP4V2Q6ZWL3 525 aaPredicted RBP9.68□□□□□ -0.86
COL6A3-201ENST00000295550 USP50Q70EL3 339 aaPredicted RBP9.68□□□□□ -0.86
COL6A3-201ENST00000295550 DENND1CQ8IV53 801 aa9.68□□□□□ -0.86
COL6A3-201ENST00000295550 KCTD7Q96MP8 289 aa9.68□□□□□ -0.86
COL6A3-201ENST00000295550 STARD7Q9NQZ5 370 aa9.68□□□□□ -0.86
COL6A3-201ENST00000295550 CHRAC1Q9NRG0 131 aa9.68□□□□□ -0.86
COL6A3-201ENST00000295550 KCNE2Q9Y6J6 123 aa9.68□□□□□ -0.86
COL6A3-201ENST00000295550 ABCA1O95477 2261 aa9.68□□□□□ -0.86
COL6A3-201ENST00000295550 BUD23O43709 281 aaKnown RBP9.68□□□□□ -0.86
COL6A3-201ENST00000295550 HSD3B1P14060 373 aa9.68□□□□□ -0.86
COL6A3-201ENST00000295550 CD247P20963 164 aa9.68□□□□□ -0.86
COL6A3-201ENST00000295550 DNAJB1P25685 340 aa9.68□□□□□ -0.86
COL6A3-201ENST00000295550 MECP2P51608 486 aaKnown RBP9.68□□□□□ -0.86
COL6A3-201ENST00000295550 BTBD16Q32M84 506 aa9.68□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 164.3 ms