RNA–Protein interactions for RNA: ENST00000637699.1

CLN3-262, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,228 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-262ENST00000637699 PPP1R32Q7Z5V6 425 aa18.73■□□□□ 0.59
CLN3-262ENST00000637699 TICAM1Q8IUC6 712 aa18.73■□□□□ 0.59
CLN3-262ENST00000637699 ZNF655Q8N720 491 aaPredicted RBP18.73■□□□□ 0.59
CLN3-262ENST00000637699 OR2Y1Q8NGV0 311 aa18.73■□□□□ 0.59
CLN3-262ENST00000637699 UBE2Q2Q8WVN8 375 aa18.73■□□□□ 0.59
CLN3-262ENST00000637699 TBRG4Q969Z0 631 aaKnown RBP eCLIP18.73■□□□□ 0.59
CLN3-262ENST00000637699 BARD1Q99728 777 aaKnown RBP18.73■□□□□ 0.59
CLN3-262ENST00000637699 VPS37BQ9H9H4 285 aa18.73■□□□□ 0.59
CLN3-262ENST00000637699 ATP13A2Q9NQ11 1180 aa18.73■□□□□ 0.59
CLN3-262ENST00000637699 TXLNGQ9NUQ3 528 aa18.73■□□□□ 0.59
CLN3-262ENST00000637699 IRAK4Q9NWZ3 460 aa18.73■□□□□ 0.59
CLN3-262ENST00000637699 ZDHHC3Q9NYG2 299 aa18.73■□□□□ 0.59
CLN3-262ENST00000637699 ICKQ9UPZ9 632 aa18.73■□□□□ 0.59
CLN3-262ENST00000637699 PCDHGA10Q9Y5H3 936 aa18.73■□□□□ 0.59
CLN3-262ENST00000637699 ALG6Q9Y672 507 aa18.73■□□□□ 0.59
CLN3-262ENST00000637699 POLEQ07864 2286 aa18.73■□□□□ 0.59
CLN3-262ENST00000637699 DIDO1Q9BTC0 2240 aaKnown RBP18.72■□□□□ 0.59
CLN3-262ENST00000637699 ZSCAN9O15535 394 aaPredicted RBP18.72■□□□□ 0.59
CLN3-262ENST00000637699 TPM3P06753 285 aa18.72■□□□□ 0.59
CLN3-262ENST00000637699 CD63P08962 238 aa18.72■□□□□ 0.59
CLN3-262ENST00000637699 PSMB4P28070 264 aa18.72■□□□□ 0.59
CLN3-262ENST00000637699 TNFRSF8P28908 595 aa18.72■□□□□ 0.59
CLN3-262ENST00000637699 MC4RP32245 332 aa18.72■□□□□ 0.59
CLN3-262ENST00000637699 GABRA4P48169 554 aa18.72■□□□□ 0.59
CLN3-262ENST00000637699 MARCKSL1P49006 195 aa18.72■□□□□ 0.59
CLN3-262ENST00000637699 ZNF140P52738 457 aaPredicted RBP18.72■□□□□ 0.59
CLN3-262ENST00000637699 RPA4Q13156 261 aa18.72■□□□□ 0.59
CLN3-262ENST00000637699 MSLNQ13421 630 aaPredicted RBP18.72■□□□□ 0.59
CLN3-262ENST00000637699 NKAIN1Q4KMZ8 207 aa18.72■□□□□ 0.59
CLN3-262ENST00000637699 UNC5AQ6ZN44 842 aa18.72■□□□□ 0.59
CLN3-262ENST00000637699 RCOR2Q8IZ40 523 aa18.72■□□□□ 0.59
CLN3-262ENST00000637699 CLDN19Q8N6F1 224 aa18.72■□□□□ 0.59
CLN3-262ENST00000637699 OR5AR1Q8NGP9 310 aa18.72■□□□□ 0.59
CLN3-262ENST00000637699 PROKR1Q8TCW9 393 aa18.72■□□□□ 0.59
CLN3-262ENST00000637699 OR2A14Q96R47 310 aa18.72■□□□□ 0.59
CLN3-262ENST00000637699 AP1M1Q9BXS5 423 aa18.72■□□□□ 0.59
CLN3-262ENST00000637699 AGPAT4Q9NRZ5 378 aa18.72■□□□□ 0.59
CLN3-262ENST00000637699 ABHD10Q9NUJ1 306 aa18.72■□□□□ 0.59
CLN3-262ENST00000637699 SPHK1Q9NYA1 384 aa18.72■□□□□ 0.59
CLN3-262ENST00000637699 AAR2Q9Y312 384 aaKnown RBP18.72■□□□□ 0.59
CLN3-262ENST00000637699 CSAG2Q9Y5P2 127 aa18.72■□□□□ 0.59
CLN3-262ENST00000637699 IGLV3-16A0A075B6K0 115 aa18.71■□□□□ 0.59
CLN3-262ENST00000637699 UMODP07911 640 aa18.71■□□□□ 0.59
CLN3-262ENST00000637699 PRSS56P0CW18 603 aa18.71■□□□□ 0.59
CLN3-262ENST00000637699 SOX8P57073 446 aa18.71■□□□□ 0.59
CLN3-262ENST00000637699 PRPSAP1Q14558 356 aa18.71■□□□□ 0.59
CLN3-262ENST00000637699 TCEAL1Q15170 157 aa18.71■□□□□ 0.59
CLN3-262ENST00000637699 GPR33Q49SQ1 333 aa18.71■□□□□ 0.59
CLN3-262ENST00000637699 TAS2R42Q7RTR8 314 aa18.71■□□□□ 0.59
CLN3-262ENST00000637699 SERPINA9Q86WD7 417 aa18.71■□□□□ 0.59
CLN3-262ENST00000637699 KATNAL2Q8IYT4 538 aa18.71■□□□□ 0.59
CLN3-262ENST00000637699 ANKRD12Q6UB98 2062 aa18.7■□□□□ 0.58
CLN3-262ENST00000637699 LRRTM2O43300 516 aa18.7■□□□□ 0.58
CLN3-262ENST00000637699 CHRM5P08912 532 aaPredicted RBP18.7■□□□□ 0.58
CLN3-262ENST00000637699 ITGA3P26006 1051 aa18.7■□□□□ 0.58
CLN3-262ENST00000637699 ACRV1P26436 265 aa18.7■□□□□ 0.58
CLN3-262ENST00000637699 SHMT2P34897 504 aa18.7■□□□□ 0.58
CLN3-262ENST00000637699 TRIM14Q14142 442 aa18.7■□□□□ 0.58
CLN3-262ENST00000637699 SPARCL1Q14515 664 aa18.7■□□□□ 0.58
CLN3-262ENST00000637699 BRD3Q15059 726 aa18.7■□□□□ 0.58
CLN3-262ENST00000637699 HIF1AQ16665 826 aa18.7■□□□□ 0.58
CLN3-262ENST00000637699 ANKRD20A2Q5SQ80 823 aa18.7■□□□□ 0.58
CLN3-262ENST00000637699 CCDC181Q5TID7 509 aa18.7■□□□□ 0.58
CLN3-262ENST00000637699 ANKRD20A1Q5TYW2 823 aa18.7■□□□□ 0.58
CLN3-262ENST00000637699 ANKRD20A3Q5VUR7 823 aa18.7■□□□□ 0.58
CLN3-262ENST00000637699 MRPL14Q6P1L8 145 aaKnown RBP18.7■□□□□ 0.58
CLN3-262ENST00000637699 BBS12Q6ZW61 710 aa18.7■□□□□ 0.58
CLN3-262ENST00000637699 ST6GALNAC3Q8NDV1 305 aa18.7■□□□□ 0.58
CLN3-262ENST00000637699 DNAJC1Q96KC8 554 aaKnown RBP18.7■□□□□ 0.58
CLN3-262ENST00000637699 NDC1Q9BTX1 674 aa18.7■□□□□ 0.58
CLN3-262ENST00000637699 SRPK3Q9UPE1 567 aa18.7■□□□□ 0.58
CLN3-262ENST00000637699 ASF1AQ9Y294 204 aa18.7■□□□□ 0.58
CLN3-262ENST00000637699 TDRKHQ9Y2W6 561 aaKnown RBP18.7■□□□□ 0.58
CLN3-262ENST00000637699 A0A0J9YY10 115 aa18.69■□□□□ 0.58
CLN3-262ENST00000637699 APOC4-APOC2K7ER74 178 aa18.69■□□□□ 0.58
CLN3-262ENST00000637699 AGPSO00116 658 aa18.69■□□□□ 0.58
CLN3-262ENST00000637699 ALOX12BO75342 701 aa18.69■□□□□ 0.58
CLN3-262ENST00000637699 APOC2P02655 101 aa18.69■□□□□ 0.58
CLN3-262ENST00000637699 ALAS2P22557 587 aa18.69■□□□□ 0.58
CLN3-262ENST00000637699 AIMP2Q13155 320 aaKnown RBP18.69■□□□□ 0.58
CLN3-262ENST00000637699 DENND5AQ6IQ26 1287 aa18.69■□□□□ 0.58
CLN3-262ENST00000637699 TLDC1Q6P9B6 456 aa18.69■□□□□ 0.58
CLN3-262ENST00000637699 KCNMB4Q86W47 210 aa18.69■□□□□ 0.58
CLN3-262ENST00000637699 FLVCR1-AS1Q8TAF5 88 aa18.69■□□□□ 0.58
CLN3-262ENST00000637699 TBL1YQ9BQ87 522 aa18.69■□□□□ 0.58
CLN3-262ENST00000637699 WDR77Q9BQA1 342 aaPredicted RBP18.69■□□□□ 0.58
CLN3-262ENST00000637699 FERMT1Q9BQL6 677 aa18.69■□□□□ 0.58
CLN3-262ENST00000637699 FBXL4Q9UKA2 621 aa18.69■□□□□ 0.58
CLN3-262ENST00000637699 INTUQ9ULD6 942 aa18.69■□□□□ 0.58
CLN3-262ENST00000637699 PLAGL1Q9UM63 463 aa18.69■□□□□ 0.58
CLN3-262ENST00000637699 NOVA2Q9UNW9 492 aaKnown RBP18.69■□□□□ 0.58
CLN3-262ENST00000637699 OSGIN2Q9Y236 505 aa18.69■□□□□ 0.58
CLN3-262ENST00000637699 CROCCQ5TZA2 2017 aa18.69■□□□□ 0.58
CLN3-262ENST00000637699 CSMD1Q96PZ7 3565 aa18.68■□□□□ 0.58
CLN3-262ENST00000637699 CNTRLQ7Z7A1 2325 aa18.68■□□□□ 0.58
CLN3-262ENST00000637699 TRBV5-4A0A0C4DH59 114 aa18.68■□□□□ 0.58
CLN3-262ENST00000637699 MACROD2A1Z1Q3 448 aa18.68■□□□□ 0.58
CLN3-262ENST00000637699 TPM1P09493 284 aa18.68■□□□□ 0.58
CLN3-262ENST00000637699 TPBGLP0DKB5 382 aa18.68■□□□□ 0.58
CLN3-262ENST00000637699 FAM20CQ8IXL6 584 aa18.68■□□□□ 0.58
Retrieved 100 of 20,778 RNA–protein pairs in 22.4 ms