RNA–Protein interactions for RNA: ENST00000637038.1

SCN1A-214, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5

Gene SCN1A, Length 4,268 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-214ENST00000637038 KCNJ9Q92806 393 aa3.91□□□□□ -1.78
SCN1A-214ENST00000637038 TMIGD2Q96BF3 282 aa3.91□□□□□ -1.78
SCN1A-214ENST00000637038 PTERQ96BW5 349 aa3.91□□□□□ -1.78
SCN1A-214ENST00000637038 FBXL20Q96IG2 436 aa3.91□□□□□ -1.78
SCN1A-214ENST00000637038 ITCHQ96J02 903 aa3.91□□□□□ -1.78
SCN1A-214ENST00000637038 CCDC115Q96NT0 180 aa3.91□□□□□ -1.78
SCN1A-214ENST00000637038 DACH2Q96NX9 599 aa3.91□□□□□ -1.78
SCN1A-214ENST00000637038 NODALQ96S42 347 aa3.91□□□□□ -1.78
SCN1A-214ENST00000637038 ATOH8Q96SQ7 321 aa3.91□□□□□ -1.78
SCN1A-214ENST00000637038 DOK1Q99704 481 aa3.91□□□□□ -1.78
SCN1A-214ENST00000637038 CORO1BQ9BR76 489 aa3.91□□□□□ -1.78
SCN1A-214ENST00000637038 C1QTNF3Q9BXJ4 246 aa3.91□□□□□ -1.78
SCN1A-214ENST00000637038 SLC29A3Q9BZD2 475 aa3.91□□□□□ -1.78
SCN1A-214ENST00000637038 GPR63Q9BZJ6 419 aa3.91□□□□□ -1.78
SCN1A-214ENST00000637038 SPATA6Q9NWH7 488 aaPredicted RBP3.91□□□□□ -1.78
SCN1A-214ENST00000637038 OPTCQ9UBM4 332 aa3.91□□□□□ -1.78
SCN1A-214ENST00000637038 MAFFQ9ULX9 164 aa3.91□□□□□ -1.78
SCN1A-214ENST00000637038 SAMD4AQ9UPU9 718 aaKnown RBP3.91□□□□□ -1.78
SCN1A-214ENST00000637038 INVSQ9Y283 1065 aa3.91□□□□□ -1.78
SCN1A-214ENST00000637038 OAS3Q9Y6K5 1087 aaKnown RBP3.91□□□□□ -1.78
SCN1A-214ENST00000637038 HSPE1-MOB4S4R3N1 261 aa3.91□□□□□ -1.78
SCN1A-214ENST00000637038 PTPRSQ13332 1948 aa3.91□□□□□ -1.78
SCN1A-214ENST00000637038 A0A1W2PPW3 197 aa3.9□□□□□ -1.78
SCN1A-214ENST00000637038 SAGE2PA6NJ88 616 aa3.9□□□□□ -1.78
SCN1A-214ENST00000637038 PRMT5O14744 637 aaPredicted RBP3.9□□□□□ -1.78
SCN1A-214ENST00000637038 SNPHO15079 494 aa3.9□□□□□ -1.78
SCN1A-214ENST00000637038 LDB2O43679 373 aa3.9□□□□□ -1.78
SCN1A-214ENST00000637038 ERN1O75460 977 aaKnown RBP3.9□□□□□ -1.78
SCN1A-214ENST00000637038 CPNE6O95741 557 aa3.9□□□□□ -1.78
SCN1A-214ENST00000637038 HMBSP08397 361 aa3.9□□□□□ -1.78
SCN1A-214ENST00000637038 TCF3P15923 654 aa3.9□□□□□ -1.78
SCN1A-214ENST00000637038 TACR2P21452 398 aa3.9□□□□□ -1.78
SCN1A-214ENST00000637038 IGFBP6P24592 240 aaPredicted RBP3.9□□□□□ -1.78
SCN1A-214ENST00000637038 PCSK6P29122 969 aa3.9□□□□□ -1.78
SCN1A-214ENST00000637038 S100A3P33764 101 aa3.9□□□□□ -1.78
SCN1A-214ENST00000637038 THPOP40225 353 aa3.9□□□□□ -1.78
SCN1A-214ENST00000637038 TSPAN7P41732 249 aa3.9□□□□□ -1.78
SCN1A-214ENST00000637038 MAPK8P45983 427 aa3.9□□□□□ -1.78
SCN1A-214ENST00000637038 PCYT1AP49585 367 aa3.9□□□□□ -1.78
SCN1A-214ENST00000637038 CDH4P55283 916 aa3.9□□□□□ -1.78
SCN1A-214ENST00000637038 DEFA1P59665 94 aa3.9□□□□□ -1.78
SCN1A-214ENST00000637038 DEFA3P59666 94 aa3.9□□□□□ -1.78
SCN1A-214ENST00000637038 IL5RAQ01344 420 aa3.9□□□□□ -1.78
SCN1A-214ENST00000637038 CYP4F3Q08477 520 aa3.9□□□□□ -1.78
SCN1A-214ENST00000637038 ITGADQ13349 1161 aa3.9□□□□□ -1.78
SCN1A-214ENST00000637038 ADAM15Q13444 863 aa3.9□□□□□ -1.78
SCN1A-214ENST00000637038 GALNT3Q14435 633 aa3.9□□□□□ -1.78
SCN1A-214ENST00000637038 ACOX1Q15067 660 aa3.9□□□□□ -1.78
SCN1A-214ENST00000637038 OR4D1Q15615 310 aa3.9□□□□□ -1.78
SCN1A-214ENST00000637038 KCNA10Q16322 511 aa3.9□□□□□ -1.78
SCN1A-214ENST00000637038 PAN2Q504Q3 1202 aaKnown RBP3.9□□□□□ -1.78
SCN1A-214ENST00000637038 C6orf136Q5SQH8 315 aa3.9□□□□□ -1.78
SCN1A-214ENST00000637038 NANOGP8Q6NSW7 305 aa3.9□□□□□ -1.78
SCN1A-214ENST00000637038 GALNT18Q6P9A2 607 aa3.9□□□□□ -1.78
SCN1A-214ENST00000637038 CYP20A1Q6UW02 462 aa3.9□□□□□ -1.78
SCN1A-214ENST00000637038 OTOP2Q7RTS6 562 aa3.9□□□□□ -1.78
SCN1A-214ENST00000637038 LDB1Q86U70 411 aaPredicted RBP3.9□□□□□ -1.78
SCN1A-214ENST00000637038 PDZD3Q86UT5 571 aa3.9□□□□□ -1.78
SCN1A-214ENST00000637038 TCAIMQ8N3R3 496 aa3.9□□□□□ -1.78
SCN1A-214ENST00000637038 OR4K2Q8NGD2 314 aa3.9□□□□□ -1.78
SCN1A-214ENST00000637038 SCAMP5Q8TAC9 235 aa3.9□□□□□ -1.78
SCN1A-214ENST00000637038 TMEM40Q8WWA1 233 aa3.9□□□□□ -1.78
SCN1A-214ENST00000637038 FCGR1BQ92637 280 aa3.9□□□□□ -1.78
SCN1A-214ENST00000637038 GLMNQ92990 594 aa3.9□□□□□ -1.78
SCN1A-214ENST00000637038 LPPQ93052 612 aa3.9□□□□□ -1.78
SCN1A-214ENST00000637038 TMBIM1Q969X1 311 aa3.9□□□□□ -1.78
SCN1A-214ENST00000637038 ZNF347Q96SE7 839 aa3.9□□□□□ -1.78
SCN1A-214ENST00000637038 FEM1AQ9BSK4 669 aa3.9□□□□□ -1.78
SCN1A-214ENST00000637038 CCDC86Q9H6F5 360 aaKnown RBP3.9□□□□□ -1.78
SCN1A-214ENST00000637038 NANOGQ9H9S0 305 aa3.9□□□□□ -1.78
SCN1A-214ENST00000637038 LIN28AQ9H9Z2 209 aaKnown RBP3.9□□□□□ -1.78
SCN1A-214ENST00000637038 MARCH4Q9P2E8 410 aaPredicted RBP3.9□□□□□ -1.78
SCN1A-214ENST00000637038 MAP10Q9P2G4 905 aa3.9□□□□□ -1.78
SCN1A-214ENST00000637038 SUSD2Q9UGT4 822 aa3.9□□□□□ -1.78
SCN1A-214ENST00000637038 ADGRE2Q9UHX3 823 aa3.9□□□□□ -1.78
SCN1A-214ENST00000637038 ENOPH1Q9UHY7 261 aa3.9□□□□□ -1.78
SCN1A-214ENST00000637038 ZNF510Q9Y2H8 683 aa3.9□□□□□ -1.78
SCN1A-214ENST00000637038 ZNF99A8MXY4 864 aaPredicted RBP3.9□□□□□ -1.78
SCN1A-214ENST00000637038 H0Y858 1186 aa3.9□□□□□ -1.78
SCN1A-214ENST00000637038 J3KR12 359 aa3.9□□□□□ -1.78
SCN1A-214ENST00000637038 BCKDKO14874 412 aa3.9□□□□□ -1.78
SCN1A-214ENST00000637038 INSIG1O15503 277 aa3.9□□□□□ -1.78
SCN1A-214ENST00000637038 APOA1P02647 267 aa3.9□□□□□ -1.78
SCN1A-214ENST00000637038 CCDC159P0C7I6 412 aa3.9□□□□□ -1.78
SCN1A-214ENST00000637038 PRPS2P11908 318 aa3.9□□□□□ -1.78
SCN1A-214ENST00000637038 CEACAM1P13688 526 aa3.9□□□□□ -1.78
SCN1A-214ENST00000637038 NCK1P16333 377 aa3.9□□□□□ -1.78
SCN1A-214ENST00000637038 GGT1P19440 569 aa3.9□□□□□ -1.78
SCN1A-214ENST00000637038 MC4RP32245 332 aa3.9□□□□□ -1.78
SCN1A-214ENST00000637038 S100A5P33763 92 aa3.9□□□□□ -1.78
SCN1A-214ENST00000637038 HOXD12P35452 270 aa3.9□□□□□ -1.78
SCN1A-214ENST00000637038 GNPDA1P46926 289 aa3.9□□□□□ -1.78
SCN1A-214ENST00000637038 BCAP31P51572 246 aa3.9□□□□□ -1.78
SCN1A-214ENST00000637038 ARSDP51689 593 aa3.9□□□□□ -1.78
SCN1A-214ENST00000637038 UFM1P61960 85 aa3.9□□□□□ -1.78
SCN1A-214ENST00000637038 ADARB1P78563 741 aaKnown RBP3.9□□□□□ -1.78
SCN1A-214ENST00000637038 IL1RL1Q01638 556 aa3.9□□□□□ -1.78
SCN1A-214ENST00000637038 GNA12Q03113 381 aa3.9□□□□□ -1.78
SCN1A-214ENST00000637038 CSTF3Q12996 717 aaKnown RBP3.9□□□□□ -1.78
SCN1A-214ENST00000637038 PMS2P3Q13401 168 aa3.9□□□□□ -1.78
Retrieved 100 of 20,778 RNA–protein pairs in 26.7 ms