RNA–Protein interactions for RNA: ENST00000611852.4

CCDC28A-202, Transcript of coiled-coil domain containing 28A, humanhuman

TSL 1 (best) BASIC

Gene CCDC28A, Length 1,505 nt, Biotype protein coding, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28A-202ENST00000611852 MPC1LP0DKB6 136 aa16.06■□□□□ 0.16
CCDC28A-202ENST00000611852 TNFRSF8P28908 595 aa16.06■□□□□ 0.16
CCDC28A-202ENST00000611852 PPP1CAP62136 330 aa16.06■□□□□ 0.16
CCDC28A-202ENST00000611852 PDAP1Q13442 181 aaKnown RBP16.06■□□□□ 0.16
CCDC28A-202ENST00000611852 C16orf72Q14CZ0 275 aa16.06■□□□□ 0.16
CCDC28A-202ENST00000611852 SNAP47Q5SQN1 464 aa16.06■□□□□ 0.16
CCDC28A-202ENST00000611852 IRGCQ6NXR0 463 aa16.06■□□□□ 0.16
CCDC28A-202ENST00000611852 CYHR1Q6ZMK1 362 aa16.06■□□□□ 0.16
CCDC28A-202ENST00000611852 ARHGAP22Q7Z5H3 698 aa16.06■□□□□ 0.16
CCDC28A-202ENST00000611852 AMIGO1Q86WK6 493 aa16.06■□□□□ 0.16
CCDC28A-202ENST00000611852 GSPT2Q8IYD1 628 aaKnown RBP16.06■□□□□ 0.16
CCDC28A-202ENST00000611852 EEF1AKMT1Q8WVE0 214 aa16.06■□□□□ 0.16
CCDC28A-202ENST00000611852 GATA6Q92908 595 aa16.06■□□□□ 0.16
CCDC28A-202ENST00000611852 ZDHHC12Q96GR4 267 aa16.06■□□□□ 0.16
CCDC28A-202ENST00000611852 CYTH2Q99418 400 aa16.06■□□□□ 0.16
CCDC28A-202ENST00000611852 MENTQ9BUN1 341 aa16.06■□□□□ 0.16
CCDC28A-202ENST00000611852 TMEM121BQ9BXQ6 578 aaPredicted RBP16.06■□□□□ 0.16
CCDC28A-202ENST00000611852 ACSS3Q9H6R3 686 aa16.06■□□□□ 0.16
CCDC28A-202ENST00000611852 KLHL3Q9UH77 587 aa16.06■□□□□ 0.16
CCDC28A-202ENST00000611852 PLAGL1Q9UM63 463 aa16.06■□□□□ 0.16
CCDC28A-202ENST00000611852 MTO1Q9Y2Z2 717 aaKnown RBP16.06■□□□□ 0.16
CCDC28A-202ENST00000611852 BTN3A3O00478 584 aa16.05■□□□□ 0.16
CCDC28A-202ENST00000611852 HGSO14964 777 aaPredicted RBP16.05■□□□□ 0.16
CCDC28A-202ENST00000611852 KIF1CO43896 1103 aaKnown RBP16.05■□□□□ 0.16
CCDC28A-202ENST00000611852 KDM1AO60341 852 aa16.05■□□□□ 0.16
CCDC28A-202ENST00000611852 FAM155BO75949 473 aa16.05■□□□□ 0.16
CCDC28A-202ENST00000611852 MPOP05164 745 aa16.05■□□□□ 0.16
CCDC28A-202ENST00000611852 POLR2CP19387 275 aaPredicted RBP16.05■□□□□ 0.16
CCDC28A-202ENST00000611852 SAT1P21673 171 aa16.05■□□□□ 0.16
CCDC28A-202ENST00000611852 SHMT2P34897 504 aa16.05■□□□□ 0.16
CCDC28A-202ENST00000611852 CCNFP41002 786 aa16.05■□□□□ 0.16
CCDC28A-202ENST00000611852 BDKRB1P46663 353 aa16.05■□□□□ 0.16
CCDC28A-202ENST00000611852 TAS2R39P59534 338 aa16.05■□□□□ 0.16
CCDC28A-202ENST00000611852 GRTP1Q5TC63 336 aa16.05■□□□□ 0.16
CCDC28A-202ENST00000611852 LRRC8EQ6NSJ5 796 aa16.05■□□□□ 0.16
CCDC28A-202ENST00000611852 TTC23LQ6PF05 361 aa16.05■□□□□ 0.16
CCDC28A-202ENST00000611852 PIWIL4Q7Z3Z4 852 aaKnown RBP16.05■□□□□ 0.16
CCDC28A-202ENST00000611852 ADGRF3Q8IZF5 1079 aa16.05■□□□□ 0.16
CCDC28A-202ENST00000611852 WDR36Q8NI36 951 aaKnown RBP16.05■□□□□ 0.16
CCDC28A-202ENST00000611852 ASB11Q8WXH4 323 aa16.05■□□□□ 0.16
CCDC28A-202ENST00000611852 RAD51AP1Q96B01 352 aa16.05■□□□□ 0.16
CCDC28A-202ENST00000611852 TXLNGYQ9BZA5 131 aa16.05■□□□□ 0.16
CCDC28A-202ENST00000611852 CIDEBQ9UHD4 219 aa16.05■□□□□ 0.16
CCDC28A-202ENST00000611852 SATB2Q9UPW6 733 aa16.05■□□□□ 0.16
CCDC28A-202ENST00000611852 PMS2P1A4D2B8 440 aa16.04■□□□□ 0.16
CCDC28A-202ENST00000611852 A8MU76 341 aa16.04■□□□□ 0.16
CCDC28A-202ENST00000611852 ARHGEF33A8MVX0 844 aa16.04■□□□□ 0.16
CCDC28A-202ENST00000611852 BTN3A1O00481 513 aa16.04■□□□□ 0.16
CCDC28A-202ENST00000611852 TSPAN12O95859 305 aa16.04■□□□□ 0.16
CCDC28A-202ENST00000611852 ANKRD34CP0C6C1 535 aa16.04■□□□□ 0.16
CCDC28A-202ENST00000611852 PKLRP30613 574 aa16.04■□□□□ 0.16
CCDC28A-202ENST00000611852 SPRP35270 261 aaPredicted RBP16.04■□□□□ 0.16
CCDC28A-202ENST00000611852 RGS4P49798 205 aa16.04■□□□□ 0.16
CCDC28A-202ENST00000611852 POU4F1Q01851 419 aa16.04■□□□□ 0.16
CCDC28A-202ENST00000611852 EIF3IQ13347 325 aaKnown RBP16.04■□□□□ 0.16
CCDC28A-202ENST00000611852 RTP5Q14D33 572 aa16.04■□□□□ 0.16
CCDC28A-202ENST00000611852 CCSMST1Q4G0I0 132 aa16.04■□□□□ 0.16
CCDC28A-202ENST00000611852 C3orf38Q5JPI3 329 aa16.04■□□□□ 0.16
CCDC28A-202ENST00000611852 EEF1AKMT2Q5JPI9 291 aaKnown RBP16.04■□□□□ 0.16
CCDC28A-202ENST00000611852 ARMC6Q6NXE6 501 aa16.04■□□□□ 0.16
CCDC28A-202ENST00000611852 TMEM207Q6UWW9 146 aa16.04■□□□□ 0.16
CCDC28A-202ENST00000611852 FAM92BQ6ZTR7 304 aa16.04■□□□□ 0.16
CCDC28A-202ENST00000611852 TRMT10CQ7L0Y3 403 aaKnown RBP16.04■□□□□ 0.16
CCDC28A-202ENST00000611852 RAB11FIP2Q7L804 512 aa16.04■□□□□ 0.16
CCDC28A-202ENST00000611852 RASGRP3Q8IV61 690 aa16.04■□□□□ 0.16
CCDC28A-202ENST00000611852 CEP97Q8IW35 865 aa16.04■□□□□ 0.16
CCDC28A-202ENST00000611852 MAGEC3Q8TD91 643 aa16.04■□□□□ 0.16
CCDC28A-202ENST00000611852 GPR22Q99680 433 aa16.04■□□□□ 0.16
CCDC28A-202ENST00000611852 CMKLR1Q99788 373 aa16.04■□□□□ 0.16
CCDC28A-202ENST00000611852 POLR1BQ9H9Y6 1135 aa16.04■□□□□ 0.16
CCDC28A-202ENST00000611852 OR6C2Q9NZP2 312 aa16.04■□□□□ 0.16
CCDC28A-202ENST00000611852 KRT87PA6NCN2 255 aa16.04■□□□□ 0.16
CCDC28A-202ENST00000611852 GFYI3L273 518 aa16.04■□□□□ 0.16
CCDC28A-202ENST00000611852 AGRPO00253 132 aa16.04■□□□□ 0.16
CCDC28A-202ENST00000611852 MATN2O00339 956 aa16.04■□□□□ 0.16
CCDC28A-202ENST00000611852 PLD2O14939 933 aa16.04■□□□□ 0.16
CCDC28A-202ENST00000611852 TOX3O15405 576 aaPredicted RBP16.04■□□□□ 0.16
CCDC28A-202ENST00000611852 CATP04040 527 aaKnown RBP16.04■□□□□ 0.16
CCDC28A-202ENST00000611852 LSSP48449 732 aa16.04■□□□□ 0.16
CCDC28A-202ENST00000611852 RAB28P51157 221 aa16.04■□□□□ 0.16
CCDC28A-202ENST00000611852 PMS2P54278 862 aa16.04■□□□□ 0.16
CCDC28A-202ENST00000611852 IL2P60568 153 aa16.04■□□□□ 0.16
CCDC28A-202ENST00000611852 GABREP78334 506 aa16.04■□□□□ 0.16
CCDC28A-202ENST00000611852 PRKAA1Q13131 559 aa16.04■□□□□ 0.16
CCDC28A-202ENST00000611852 PRSS42Q7Z5A4 293 aa16.04■□□□□ 0.16
CCDC28A-202ENST00000611852 NXPE2Q96DL1 559 aa16.04■□□□□ 0.16
CCDC28A-202ENST00000611852 LINGO1Q96FE5 620 aa16.04■□□□□ 0.16
CCDC28A-202ENST00000611852 PRR11Q96HE9 360 aaPredicted RBP16.04■□□□□ 0.16
CCDC28A-202ENST00000611852 IL17FQ96PD4 163 aa16.04■□□□□ 0.16
CCDC28A-202ENST00000611852 TWSG1Q9GZX9 223 aa16.04■□□□□ 0.16
CCDC28A-202ENST00000611852 CAB39LQ9H9S4 337 aa16.04■□□□□ 0.16
CCDC28A-202ENST00000611852 SEMA5BQ9P283 1151 aa16.04■□□□□ 0.16
CCDC28A-202ENST00000611852 SLC39A10Q9ULF5 831 aa16.04■□□□□ 0.16
CCDC28A-202ENST00000611852 LOXL2Q9Y4K0 774 aa16.04■□□□□ 0.16
CCDC28A-202ENST00000611852 PCDHGA8Q9Y5G5 932 aa16.04■□□□□ 0.16
CCDC28A-202ENST00000611852 CHD8Q9HCK8 2581 aa16.03■□□□□ 0.16
CCDC28A-202ENST00000611852 GSAPA4D1B5 854 aa16.03■□□□□ 0.16
CCDC28A-202ENST00000611852 RASGRF2O14827 1237 aa16.03■□□□□ 0.16
CCDC28A-202ENST00000611852 RASSF9O75901 435 aa16.03■□□□□ 0.16
CCDC28A-202ENST00000611852 CHRM5P08912 532 aaPredicted RBP16.03■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 39.9 ms