RNA–Protein interactions for RNA: ENST00000562389.5

CLK3-207, Transcript of CDC like kinase 3, humanhuman

TSL 4

Gene CLK3, Length 572 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-207ENST00000562389 FAM45AQ8TCE6 357 aa16.23■□□□□ 0.19
CLK3-207ENST00000562389 SKA2Q8WVK7 121 aaPredicted RBP16.23■□□□□ 0.19
CLK3-207ENST00000562389 SLC46A1Q96NT5 459 aa16.23■□□□□ 0.19
CLK3-207ENST00000562389 MCMBPQ9BTE3 642 aa16.23■□□□□ 0.19
CLK3-207ENST00000562389 ZNF768Q9H5H4 540 aaKnown RBP16.23■□□□□ 0.19
CLK3-207ENST00000562389 ASCL3Q9NQ33 180 aa16.23■□□□□ 0.19
CLK3-207ENST00000562389 TRMT6Q9UJA5 497 aaKnown RBP16.23■□□□□ 0.19
CLK3-207ENST00000562389 NFS1Q9Y697 457 aa16.23■□□□□ 0.19
CLK3-207ENST00000562389 TLCD2A6NGC4 264 aa16.22■□□□□ 0.19
CLK3-207ENST00000562389 CDRT15L2A8MXV6 281 aa16.22■□□□□ 0.19
CLK3-207ENST00000562389 BTN3A3O00478 584 aa16.22■□□□□ 0.19
CLK3-207ENST00000562389 BTN3A1O00481 513 aa16.22■□□□□ 0.19
CLK3-207ENST00000562389 TPBGLP0DKB5 382 aa16.22■□□□□ 0.19
CLK3-207ENST00000562389 POLR2CP19387 275 aaPredicted RBP16.22■□□□□ 0.19
CLK3-207ENST00000562389 FDXRP22570 491 aa16.22■□□□□ 0.19
CLK3-207ENST00000562389 RBMS1P29558 406 aaKnown RBP16.22■□□□□ 0.19
CLK3-207ENST00000562389 STX2P32856 288 aa16.22■□□□□ 0.19
CLK3-207ENST00000562389 CCNFP41002 786 aa16.22■□□□□ 0.19
CLK3-207ENST00000562389 CDKN2DP55273 166 aa16.22■□□□□ 0.19
CLK3-207ENST00000562389 ERVPABLB-1P60509 514 aa16.22■□□□□ 0.19
CLK3-207ENST00000562389 GRB7Q14451 532 aa16.22■□□□□ 0.19
CLK3-207ENST00000562389 TBC1D25Q3MII6 688 aa16.22■□□□□ 0.19
CLK3-207ENST00000562389 HECTD2Q5U5R9 776 aa16.22■□□□□ 0.19
CLK3-207ENST00000562389 CACHD1Q5VU97 1274 aa16.22■□□□□ 0.19
CLK3-207ENST00000562389 FOXR1Q6PIV2 292 aa16.22■□□□□ 0.19
CLK3-207ENST00000562389 FAM92BQ6ZTR7 304 aa16.22■□□□□ 0.19
CLK3-207ENST00000562389 ZC3HC1Q86WB0 502 aaKnown RBP16.22■□□□□ 0.19
CLK3-207ENST00000562389 IFT20Q8IY31 132 aa16.22■□□□□ 0.19
CLK3-207ENST00000562389 ADGRF3Q8IZF5 1079 aa16.22■□□□□ 0.19
CLK3-207ENST00000562389 CARFQ8N187 725 aa16.22■□□□□ 0.19
CLK3-207ENST00000562389 GPATCH11Q8N954 259 aa16.22■□□□□ 0.19
CLK3-207ENST00000562389 MAGEC3Q8TD91 643 aa16.22■□□□□ 0.19
CLK3-207ENST00000562389 ZCCHC14Q8WYQ9 949 aaKnown RBP16.22■□□□□ 0.19
CLK3-207ENST00000562389 ZNF578Q96N58 590 aaPredicted RBP16.22■□□□□ 0.19
CLK3-207ENST00000562389 NRTNQ99748 197 aa16.22■□□□□ 0.19
CLK3-207ENST00000562389 MENTQ9BUN1 341 aa16.22■□□□□ 0.19
CLK3-207ENST00000562389 TWSG1Q9GZX9 223 aa16.22■□□□□ 0.19
CLK3-207ENST00000562389 RHOJQ9H4E5 214 aa16.22■□□□□ 0.19
CLK3-207ENST00000562389 XKR8Q9H6D3 395 aa16.22■□□□□ 0.19
CLK3-207ENST00000562389 OR6C2Q9NZP2 312 aa16.22■□□□□ 0.19
CLK3-207ENST00000562389 PISDQ9UG56 409 aa16.22■□□□□ 0.19
CLK3-207ENST00000562389 POMT2Q9UKY4 750 aa16.22■□□□□ 0.19
CLK3-207ENST00000562389 RUVBL2Q9Y230 463 aaKnown RBP16.22■□□□□ 0.19
CLK3-207ENST00000562389 CXorf49A8MYA2 514 aaPredicted RBP16.21■□□□□ 0.19
CLK3-207ENST00000562389 B4E171 279 aa16.21■□□□□ 0.19
CLK3-207ENST00000562389 PSIP1O75475 530 aaKnown RBP16.21■□□□□ 0.19
CLK3-207ENST00000562389 RASSF9O75901 435 aa16.21■□□□□ 0.19
CLK3-207ENST00000562389 TNFSF15O95150 251 aa16.21■□□□□ 0.19
CLK3-207ENST00000562389 RHOXF2BP0C7M4 288 aa16.21■□□□□ 0.19
CLK3-207ENST00000562389 ITIH1P19827 911 aa16.21■□□□□ 0.19
CLK3-207ENST00000562389 PKLRP30613 574 aa16.21■□□□□ 0.19
CLK3-207ENST00000562389 ETV5P41161 510 aa16.21■□□□□ 0.19
CLK3-207ENST00000562389 TSPAN7P41732 249 aa16.21■□□□□ 0.19
CLK3-207ENST00000562389 BDKRB1P46663 353 aa16.21■□□□□ 0.19
CLK3-207ENST00000562389 RAB28P51157 221 aa16.21■□□□□ 0.19
CLK3-207ENST00000562389 KPNA2P52292 529 aaKnown RBP16.21■□□□□ 0.19
CLK3-207ENST00000562389 LRRC8EQ6NSJ5 796 aa16.21■□□□□ 0.19
CLK3-207ENST00000562389 TTC23LQ6PF05 361 aa16.21■□□□□ 0.19
CLK3-207ENST00000562389 CLEC14AQ86T13 490 aa16.21■□□□□ 0.19
CLK3-207ENST00000562389 CPNE9Q8IYJ1 553 aa16.21■□□□□ 0.19
CLK3-207ENST00000562389 BMPERQ8N8U9 685 aa16.21■□□□□ 0.19
CLK3-207ENST00000562389 KLHL6Q8WZ60 621 aa16.21■□□□□ 0.19
CLK3-207ENST00000562389 UBXN4Q92575 508 aa16.21■□□□□ 0.19
CLK3-207ENST00000562389 RAD51AP1Q96B01 352 aa16.21■□□□□ 0.19
CLK3-207ENST00000562389 MAP3K3Q99759 626 aa16.21■□□□□ 0.19
CLK3-207ENST00000562389 CPNE1Q99829 537 aa16.21■□□□□ 0.19
CLK3-207ENST00000562389 RHOXF2Q9BQY4 288 aa16.21■□□□□ 0.19
CLK3-207ENST00000562389 RAB11FIP5Q9BXF6 653 aa16.21■□□□□ 0.19
CLK3-207ENST00000562389 B3GNT4Q9C0J1 378 aa16.21■□□□□ 0.19
CLK3-207ENST00000562389 THSD1Q9NS62 852 aa16.21■□□□□ 0.19
CLK3-207ENST00000562389 TSR3Q9UJK0 312 aaKnown RBP16.21■□□□□ 0.19
CLK3-207ENST00000562389 PLAGL1Q9UM63 463 aa16.21■□□□□ 0.19
CLK3-207ENST00000562389 VWA7Q9Y334 891 aa16.21■□□□□ 0.19
CLK3-207ENST00000562389 FAM95CA0A1B0GW59 222 aa16.2■□□□□ 0.18
CLK3-207ENST00000562389 GSAPA4D1B5 854 aa16.2■□□□□ 0.18
CLK3-207ENST00000562389 EFCAB7A8K855 629 aa16.2■□□□□ 0.18
CLK3-207ENST00000562389 C2orf74A8MZ97 194 aa16.2■□□□□ 0.18
CLK3-207ENST00000562389 AGRPO00253 132 aa16.2■□□□□ 0.18
CLK3-207ENST00000562389 RASGRF2O14827 1237 aa16.2■□□□□ 0.18
CLK3-207ENST00000562389 KIF1CO43896 1103 aaKnown RBP16.2■□□□□ 0.18
CLK3-207ENST00000562389 FGF3P11487 239 aaPredicted RBP16.2■□□□□ 0.18
CLK3-207ENST00000562389 CCL4P13236 92 aa16.2■□□□□ 0.18
CLK3-207ENST00000562389 MCM3P25205 808 aa16.2■□□□□ 0.18
CLK3-207ENST00000562389 RGS4P49798 205 aa16.2■□□□□ 0.18
CLK3-207ENST00000562389 PDAP1Q13442 181 aaKnown RBP16.2■□□□□ 0.18
CLK3-207ENST00000562389 NAB1Q13506 487 aa16.2■□□□□ 0.18
CLK3-207ENST00000562389 KBTBD12Q3ZCT8 623 aa16.2■□□□□ 0.18
CLK3-207ENST00000562389 CYHR1Q6ZMK1 362 aa16.2■□□□□ 0.18
CLK3-207ENST00000562389 PROSER1Q86XN7 944 aa16.2■□□□□ 0.18
CLK3-207ENST00000562389 KMT5CQ86Y97 462 aa16.2■□□□□ 0.18
CLK3-207ENST00000562389 RASGRP3Q8IV61 690 aa16.2■□□□□ 0.18
CLK3-207ENST00000562389 FBF1Q8TES7 1133 aa16.2■□□□□ 0.18
CLK3-207ENST00000562389 VPS39Q96JC1 886 aa16.2■□□□□ 0.18
CLK3-207ENST00000562389 ELMO2Q96JJ3 720 aa16.2■□□□□ 0.18
CLK3-207ENST00000562389 OLFM1Q99784 485 aa16.2■□□□□ 0.18
CLK3-207ENST00000562389 OCIAD1Q9NX40 245 aa16.2■□□□□ 0.18
CLK3-207ENST00000562389 SIDT1Q9NXL6 827 aaKnown RBP16.2■□□□□ 0.18
CLK3-207ENST00000562389 ACTR10Q9NZ32 417 aa16.2■□□□□ 0.18
CLK3-207ENST00000562389 NINJ2Q9NZG7 142 aa16.2■□□□□ 0.18
CLK3-207ENST00000562389 TXNDC16Q9P2K2 825 aa16.2■□□□□ 0.18
Retrieved 100 of 20,778 RNA–protein pairs in 33.5 ms