RNA–Protein interactions for RNA: ENST00000561689.6

CLN3-209, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,957 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-209ENST00000561689 STK25O00506 426 aa20.74■□□□□ 0.91
CLN3-209ENST00000561689 FPGTO14772 594 aa20.74■□□□□ 0.91
CLN3-209ENST00000561689 SCAMP1O15126 338 aa20.74■□□□□ 0.91
CLN3-209ENST00000561689 LATO43561 262 aa20.74■□□□□ 0.91
CLN3-209ENST00000561689 DCXO43602 365 aa20.74■□□□□ 0.91
CLN3-209ENST00000561689 C1orf105O95561 183 aa20.74■□□□□ 0.91
CLN3-209ENST00000561689 OTCP00480 354 aa20.74■□□□□ 0.91
CLN3-209ENST00000561689 ACP5P13686 325 aa20.74■□□□□ 0.91
CLN3-209ENST00000561689 EPB42P16452 691 aa20.74■□□□□ 0.91
CLN3-209ENST00000561689 HNRNPA2B1P22626 353 aaKnown RBP20.74■□□□□ 0.91
CLN3-209ENST00000561689 CCNG1P51959 295 aa20.74■□□□□ 0.91
CLN3-209ENST00000561689 FAM91A1Q658Y4 838 aa20.74■□□□□ 0.91
CLN3-209ENST00000561689 MARK4Q96L34 752 aa20.74■□□□□ 0.91
CLN3-209ENST00000561689 PKP4Q99569 1192 aa20.74■□□□□ 0.91
CLN3-209ENST00000561689 TPSD1Q9BZJ3 242 aa20.74■□□□□ 0.91
CLN3-209ENST00000561689 OR52A5Q9H2C5 316 aa20.74■□□□□ 0.91
CLN3-209ENST00000561689 SLC32A1Q9H598 525 aa20.74■□□□□ 0.91
CLN3-209ENST00000561689 TXLNGQ9NUQ3 528 aa20.74■□□□□ 0.91
CLN3-209ENST00000561689 VCANP13611 3396 aa20.73■□□□□ 0.91
CLN3-209ENST00000561689 WDR47O94967 919 aa20.73■□□□□ 0.91
CLN3-209ENST00000561689 IGLV3-19P01714 112 aa20.73■□□□□ 0.91
CLN3-209ENST00000561689 ENO1P06733 434 aaKnown RBP20.73■□□□□ 0.91
CLN3-209ENST00000561689 LINC00032P0C843 101 aa20.73■□□□□ 0.91
CLN3-209ENST00000561689 UROSP10746 265 aa20.73■□□□□ 0.91
CLN3-209ENST00000561689 ACADLP28330 430 aa20.73■□□□□ 0.91
CLN3-209ENST00000561689 MAPK9P45984 424 aa20.73■□□□□ 0.91
CLN3-209ENST00000561689 SLC6A12P48065 614 aa20.73■□□□□ 0.91
CLN3-209ENST00000561689 TRAF3Q13114 568 aa20.73■□□□□ 0.91
CLN3-209ENST00000561689 KRT72Q14CN4 511 aa20.73■□□□□ 0.91
CLN3-209ENST00000561689 TCHHL1Q5QJ38 904 aaPredicted RBP20.73■□□□□ 0.91
CLN3-209ENST00000561689 METTL2BQ6P1Q9 378 aaKnown RBP20.73■□□□□ 0.91
CLN3-209ENST00000561689 MILR1Q7Z6M3 343 aa20.73■□□□□ 0.91
CLN3-209ENST00000561689 PACS2Q86VP3 889 aa20.73■□□□□ 0.91
CLN3-209ENST00000561689 CEP70Q8NHQ1 597 aa20.73■□□□□ 0.91
CLN3-209ENST00000561689 STON2Q8WXE9 905 aa20.73■□□□□ 0.91
CLN3-209ENST00000561689 RLN3Q8WXF3 142 aa20.73■□□□□ 0.91
CLN3-209ENST00000561689 FBXL8Q96CD0 374 aa20.73■□□□□ 0.91
CLN3-209ENST00000561689 BMFQ96LC9 184 aa20.73■□□□□ 0.91
CLN3-209ENST00000561689 ZDHHC5Q9C0B5 715 aa20.73■□□□□ 0.91
CLN3-209ENST00000561689 SUFUQ9UMX1 484 aa20.73■□□□□ 0.91
CLN3-209ENST00000561689 DNMT3AQ9Y6K1 912 aaPredicted RBP20.73■□□□□ 0.91
CLN3-209ENST00000561689 CAPN1P07384 714 aa20.72■□□□□ 0.91
CLN3-209ENST00000561689 ITPKAP23677 461 aa20.72■□□□□ 0.91
CLN3-209ENST00000561689 RPL10P27635 214 aaKnown RBP20.72■□□□□ 0.91
CLN3-209ENST00000561689 METRNLQ641Q3 311 aa20.72■□□□□ 0.91
CLN3-209ENST00000561689 SCIMPQ6UWF3 145 aa20.72■□□□□ 0.91
CLN3-209ENST00000561689 SNX31Q8N9S9 440 aa20.72■□□□□ 0.91
CLN3-209ENST00000561689 DENND6BQ8NEG7 585 aa20.72■□□□□ 0.91
CLN3-209ENST00000561689 PTCD3Q96EY7 689 aaKnown RBP20.72■□□□□ 0.91
CLN3-209ENST00000561689 NSL1Q96IY1 281 aa20.72■□□□□ 0.91
CLN3-209ENST00000561689 CCDC138Q96M89 665 aa20.72■□□□□ 0.91
CLN3-209ENST00000561689 CATSPER2Q96P56 530 aa20.72■□□□□ 0.91
CLN3-209ENST00000561689 TBC1D17Q9HA65 648 aa20.72■□□□□ 0.91
CLN3-209ENST00000561689 FGF22Q9HCT0 170 aa20.72■□□□□ 0.91
CLN3-209ENST00000561689 SLC22A14Q9Y267 594 aa20.72■□□□□ 0.91
CLN3-209ENST00000561689 PLEKHM1Q9Y4G2 1056 aa20.72■□□□□ 0.91
CLN3-209ENST00000561689 C19orf67A6NJJ6 358 aa20.72■□□□□ 0.91
CLN3-209ENST00000561689 SLC16A8O95907 504 aa20.72■□□□□ 0.91
CLN3-209ENST00000561689 EPORP19235 508 aa20.72■□□□□ 0.91
CLN3-209ENST00000561689 PXNP49023 591 aaPredicted RBP20.72■□□□□ 0.91
CLN3-209ENST00000561689 RPA4Q13156 261 aa20.72■□□□□ 0.91
CLN3-209ENST00000561689 LRRC70Q7Z2Q7 622 aa20.72■□□□□ 0.91
CLN3-209ENST00000561689 GALNT13Q8IUC8 556 aa20.72■□□□□ 0.91
CLN3-209ENST00000561689 FAM160A2Q8N612 972 aaPredicted RBP20.72■□□□□ 0.91
CLN3-209ENST00000561689 PHC3Q8NDX5 983 aa20.72■□□□□ 0.91
CLN3-209ENST00000561689 METTL6Q8TCB7 284 aa20.72■□□□□ 0.91
CLN3-209ENST00000561689 ACTRT2Q8TDY3 377 aa20.72■□□□□ 0.91
CLN3-209ENST00000561689 NELL2Q99435 816 aa20.72■□□□□ 0.91
CLN3-209ENST00000561689 STOX2Q9P2F5 926 aaPredicted RBP20.72■□□□□ 0.91
CLN3-209ENST00000561689 KCNK6Q9Y257 313 aa20.72■□□□□ 0.91
CLN3-209ENST00000561689 GPSM3Q9Y4H4 160 aa20.72■□□□□ 0.91
CLN3-209ENST00000561689 IGHV4-34P06331 123 aa20.71■□□□□ 0.91
CLN3-209ENST00000561689 GNPDA1P46926 289 aa20.71■□□□□ 0.91
CLN3-209ENST00000561689 CCR3P51677 355 aa20.71■□□□□ 0.91
CLN3-209ENST00000561689 PYCR3Q53H96 274 aa20.71■□□□□ 0.91
CLN3-209ENST00000561689 TPRG1LQ5T0D9 272 aa20.71■□□□□ 0.91
CLN3-209ENST00000561689 FBXW10Q5XX13 1052 aa20.71■□□□□ 0.91
CLN3-209ENST00000561689 AGTRAPQ6RW13 159 aa20.71■□□□□ 0.91
CLN3-209ENST00000561689 PDZD3Q86UT5 571 aa20.71■□□□□ 0.91
CLN3-209ENST00000561689 PPFIBP2Q8ND30 876 aa20.71■□□□□ 0.91
CLN3-209ENST00000561689 GPR174Q9BXC1 333 aa20.71■□□□□ 0.91
CLN3-209ENST00000561689 NUSAP1Q9BXS6 441 aaKnown RBP20.71■□□□□ 0.91
CLN3-209ENST00000561689 OSGEPL1Q9H4B0 414 aa20.71■□□□□ 0.91
CLN3-209ENST00000561689 GIMAP2Q9UG22 337 aa20.71■□□□□ 0.91
CLN3-209ENST00000561689 ASF1AQ9Y294 204 aa20.71■□□□□ 0.91
CLN3-209ENST00000561689 CFAP20Q9Y6A4 193 aaKnown RBP20.71■□□□□ 0.91
CLN3-209ENST00000561689 ATP5HO75947 161 aa20.7■□□□□ 0.9
CLN3-209ENST00000561689 CHEK2O96017 543 aa20.7■□□□□ 0.9
CLN3-209ENST00000561689 AOC1P19801 751 aa20.7■□□□□ 0.9
CLN3-209ENST00000561689 PIK3CGP48736 1102 aa20.7■□□□□ 0.9
CLN3-209ENST00000561689 PFN3P60673 137 aa20.7■□□□□ 0.9
CLN3-209ENST00000561689 GCNT7Q6ZNI0 430 aa20.7■□□□□ 0.9
CLN3-209ENST00000561689 MYLK4Q86YV6 388 aaPredicted RBP20.7■□□□□ 0.9
CLN3-209ENST00000561689 KIF2BQ8N4N8 673 aa20.7■□□□□ 0.9
CLN3-209ENST00000561689 MED8Q96G25 268 aa20.7■□□□□ 0.9
CLN3-209ENST00000561689 UHRF1Q96T88 793 aaPredicted RBP20.7■□□□□ 0.9
CLN3-209ENST00000561689 AKTIPQ9H8T0 292 aa20.7■□□□□ 0.9
CLN3-209ENST00000561689 RMI1Q9H9A7 625 aa20.7■□□□□ 0.9
CLN3-209ENST00000561689 WSB2Q9NYS7 404 aaPredicted RBP20.7■□□□□ 0.9
CLN3-209ENST00000561689 STK38LQ9Y2H1 464 aa20.7■□□□□ 0.9
Retrieved 100 of 20,778 RNA–protein pairs in 46.2 ms