RNA–Protein interactions for RNA: ENST00000556825.5

SHMT2-226, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 1 (best)

Gene SHMT2, Length 2,215 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-226ENST00000556825 NSMAFQ92636 917 aa13.55□□□□□ -0.24
SHMT2-226ENST00000556825 TRIM43Q96BQ3 446 aaPredicted RBP13.55□□□□□ -0.24
SHMT2-226ENST00000556825 COQ8BQ96D53 544 aa13.55□□□□□ -0.24
SHMT2-226ENST00000556825 ELP4Q96EB1 424 aa13.55□□□□□ -0.24
SHMT2-226ENST00000556825 MOCOSQ96EN8 888 aa13.55□□□□□ -0.24
SHMT2-226ENST00000556825 C10orf90Q96M02 699 aa13.55□□□□□ -0.24
SHMT2-226ENST00000556825 BBS4Q96RK4 519 aa13.55□□□□□ -0.24
SHMT2-226ENST00000556825 MCCC1Q96RQ3 725 aaPredicted RBP13.55□□□□□ -0.24
SHMT2-226ENST00000556825 EIF2AK1Q9BQI3 630 aaKnown RBP13.55□□□□□ -0.24
SHMT2-226ENST00000556825 COPS4Q9BT78 406 aa13.55□□□□□ -0.24
SHMT2-226ENST00000556825 MND1Q9BWT6 205 aa13.55□□□□□ -0.24
SHMT2-226ENST00000556825 C3orf14Q9HBI5 128 aa13.55□□□□□ -0.24
SHMT2-226ENST00000556825 CCNB1IP1Q9NPC3 277 aa13.55□□□□□ -0.24
SHMT2-226ENST00000556825 DYRK4Q9NR20 520 aa13.55□□□□□ -0.24
SHMT2-226ENST00000556825 CMTM6Q9NX76 183 aa13.55□□□□□ -0.24
SHMT2-226ENST00000556825 PAK5Q9P286 719 aa13.55□□□□□ -0.24
SHMT2-226ENST00000556825 FAM198AQ9UFP1 575 aa13.55□□□□□ -0.24
SHMT2-226ENST00000556825 MID2Q9UJV3 735 aa13.55□□□□□ -0.24
SHMT2-226ENST00000556825 F8VP50 259 aa13.55□□□□□ -0.24
SHMT2-226ENST00000556825 NDUFB10O96000 172 aa13.55□□□□□ -0.24
SHMT2-226ENST00000556825 F9P00740 461 aa13.55□□□□□ -0.24
SHMT2-226ENST00000556825 CSF2P04141 144 aa13.55□□□□□ -0.24
SHMT2-226ENST00000556825 RPLP0P05388 317 aaKnown RBP13.55□□□□□ -0.24
SHMT2-226ENST00000556825 LCKP06239 509 aa13.55□□□□□ -0.24
SHMT2-226ENST00000556825 TRHRP34981 398 aaPredicted RBP13.55□□□□□ -0.24
SHMT2-226ENST00000556825 ATP5C1P36542 298 aaKnown RBP13.55□□□□□ -0.24
SHMT2-226ENST00000556825 CLCN4P51793 760 aa13.55□□□□□ -0.24
SHMT2-226ENST00000556825 FOXK2Q01167 660 aa13.55□□□□□ -0.24
SHMT2-226ENST00000556825 FGFBP1Q14512 234 aa13.55□□□□□ -0.24
SHMT2-226ENST00000556825 FUT10Q6P4F1 479 aa13.55□□□□□ -0.24
SHMT2-226ENST00000556825 B3GNT8Q7Z7M8 397 aa13.55□□□□□ -0.24
SHMT2-226ENST00000556825 GHDCQ8N2G8 530 aa13.55□□□□□ -0.24
SHMT2-226ENST00000556825 SVIPQ8NHG7 77 aa13.55□□□□□ -0.24
SHMT2-226ENST00000556825 RBP7Q96R05 134 aa13.55□□□□□ -0.24
SHMT2-226ENST00000556825 SORBS1Q9BX66 1292 aaKnown RBP13.55□□□□□ -0.24
SHMT2-226ENST00000556825 SMURF2Q9HAU4 748 aa13.55□□□□□ -0.24
SHMT2-226ENST00000556825 ARNT2Q9HBZ2 717 aa13.55□□□□□ -0.24
SHMT2-226ENST00000556825 MCUBQ9NWR8 336 aa13.55□□□□□ -0.24
SHMT2-226ENST00000556825 MGAT4AQ9UM21 535 aa13.55□□□□□ -0.24
SHMT2-226ENST00000556825 ERVK-19Q9WJR5 959 aa13.55□□□□□ -0.24
SHMT2-226ENST00000556825 ASB4Q9Y574 426 aa13.55□□□□□ -0.24
SHMT2-226ENST00000556825 PCDHB5Q9Y5E4 795 aa13.55□□□□□ -0.24
SHMT2-226ENST00000556825 MAFBQ9Y5Q3 323 aaPredicted RBP13.55□□□□□ -0.24
SHMT2-226ENST00000556825 V9GYH0 126 aa13.55□□□□□ -0.24
SHMT2-226ENST00000556825 TRBV23-1A0A0A0MS06 115 aa13.54□□□□□ -0.24
SHMT2-226ENST00000556825 RRN3P2A6NIE6 340 aa13.54□□□□□ -0.24
SHMT2-226ENST00000556825 BBIP1A8MTZ0 92 aa13.54□□□□□ -0.24
SHMT2-226ENST00000556825 A8MXK9 166 aa13.54□□□□□ -0.24
SHMT2-226ENST00000556825 SEC14L5O43304 696 aa13.54□□□□□ -0.24
SHMT2-226ENST00000556825 MAGEA3P43357 314 aa13.54□□□□□ -0.24
SHMT2-226ENST00000556825 MAGEA6P43360 314 aa13.54□□□□□ -0.24
SHMT2-226ENST00000556825 MAGEA12P43365 314 aa13.54□□□□□ -0.24
SHMT2-226ENST00000556825 CSNK2BP67870 215 aa13.54□□□□□ -0.24
SHMT2-226ENST00000556825 GTF2BQ00403 316 aa13.54□□□□□ -0.24
SHMT2-226ENST00000556825 ROR1Q01973 937 aa13.54□□□□□ -0.24
SHMT2-226ENST00000556825 RPA4Q13156 261 aa13.54□□□□□ -0.24
SHMT2-226ENST00000556825 LARS2Q15031 903 aaKnown RBP13.54□□□□□ -0.24
SHMT2-226ENST00000556825 PTPRRQ15256 657 aa13.54□□□□□ -0.24
SHMT2-226ENST00000556825 SYT16Q17RD7 645 aa13.54□□□□□ -0.24
SHMT2-226ENST00000556825 LIPMQ5VYY2 423 aa13.54□□□□□ -0.24
SHMT2-226ENST00000556825 PLET1Q6UQ28 207 aa13.54□□□□□ -0.24
SHMT2-226ENST00000556825 PTRH1Q86Y79 214 aaKnown RBP13.54□□□□□ -0.24
SHMT2-226ENST00000556825 PHF13Q86YI8 300 aaPredicted RBP13.54□□□□□ -0.24
SHMT2-226ENST00000556825 GPR156Q8NFN8 814 aa13.54□□□□□ -0.24
SHMT2-226ENST00000556825 DNERQ8NFT8 737 aa13.54□□□□□ -0.24
SHMT2-226ENST00000556825 LRCH3Q96II8 777 aa13.54□□□□□ -0.24
SHMT2-226ENST00000556825 RNF145Q96MT1 663 aa13.54□□□□□ -0.24
SHMT2-226ENST00000556825 SEPHS2Q99611 448 aa13.54□□□□□ -0.24
SHMT2-226ENST00000556825 SRRQ9GZT4 340 aa13.54□□□□□ -0.24
SHMT2-226ENST00000556825 CAB39LQ9H9S4 337 aa13.54□□□□□ -0.24
SHMT2-226ENST00000556825 VAT1LQ9HCJ6 419 aa13.54□□□□□ -0.24
SHMT2-226ENST00000556825 ANKEF1Q9NU02 776 aa13.54□□□□□ -0.24
SHMT2-226ENST00000556825 MED9Q9NWA0 146 aa13.54□□□□□ -0.24
SHMT2-226ENST00000556825 KCMF1Q9P0J7 381 aa13.54□□□□□ -0.24
SHMT2-226ENST00000556825 NIPSNAP3AQ9UFN0 247 aaPredicted RBP13.54□□□□□ -0.24
SHMT2-226ENST00000556825 PURGQ9UJV8 347 aaKnown RBP13.54□□□□□ -0.24
SHMT2-226ENST00000556825 C2orf74A8MZ97 194 aa13.54□□□□□ -0.24
SHMT2-226ENST00000556825 E9PAM4 449 aa13.54□□□□□ -0.24
SHMT2-226ENST00000556825 G3V2T6 193 aa13.54□□□□□ -0.24
SHMT2-226ENST00000556825 UBXN8O00124 270 aa13.54□□□□□ -0.24
SHMT2-226ENST00000556825 SLC16A6O15403 523 aa13.54□□□□□ -0.24
SHMT2-226ENST00000556825 FABP7O15540 132 aa13.54□□□□□ -0.24
SHMT2-226ENST00000556825 PCDHGA12O60330 932 aa13.54□□□□□ -0.24
SHMT2-226ENST00000556825 IGHV2-70P01814 119 aa13.54□□□□□ -0.24
SHMT2-226ENST00000556825 ACAA1P09110 424 aaPredicted RBP13.54□□□□□ -0.24
SHMT2-226ENST00000556825 TNNI1P19237 187 aa13.54□□□□□ -0.24
SHMT2-226ENST00000556825 ARSDP51689 593 aa13.54□□□□□ -0.24
SHMT2-226ENST00000556825 RPL7AP62424 266 aaKnown RBP13.54□□□□□ -0.24
SHMT2-226ENST00000556825 HOXC5Q00444 222 aa13.54□□□□□ -0.24
SHMT2-226ENST00000556825 IL5RAQ01344 420 aa13.54□□□□□ -0.24
SHMT2-226ENST00000556825 GABPAQ06546 454 aa13.54□□□□□ -0.24
SHMT2-226ENST00000556825 ZNF252P-AS1Q0IIN9 211 aa13.54□□□□□ -0.24
SHMT2-226ENST00000556825 ERV3-1Q14264 604 aa13.54□□□□□ -0.24
SHMT2-226ENST00000556825 TAZQ16635 292 aa13.54□□□□□ -0.24
SHMT2-226ENST00000556825 PAN3Q58A45 887 aaKnown RBP13.54□□□□□ -0.24
SHMT2-226ENST00000556825 ZNF470Q6ECI4 717 aa13.54□□□□□ -0.24
SHMT2-226ENST00000556825 ERICH5Q6P6B1 374 aa13.54□□□□□ -0.24
SHMT2-226ENST00000556825 BTN2A1Q7KYR7 527 aa13.54□□□□□ -0.24
SHMT2-226ENST00000556825 BNIPLQ7Z465 357 aa13.54□□□□□ -0.24
SHMT2-226ENST00000556825 CYP4Z2PQ8N1L4 340 aa13.54□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 30.7 ms