RNA–Protein interactions for RNA: ENST00000540469.5

SFSWAP-209, Transcript of splicing factor SWAP, humanhuman

TSL 3

Gene SFSWAP, Length 3,536 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SFSWAP-209ENST00000540469 FAM25AB3EWG3 89 aa12.59□□□□□ -0.39
SFSWAP-209ENST00000540469 FAM25CB3EWG5 89 aa12.59□□□□□ -0.39
SFSWAP-209ENST00000540469 FAM25GB3EWG6 89 aa12.59□□□□□ -0.39
SFSWAP-209ENST00000540469 RPLP0P05388 317 aaKnown RBP12.59□□□□□ -0.39
SFSWAP-209ENST00000540469 CD6P30203 668 aa12.59□□□□□ -0.39
SFSWAP-209ENST00000540469 IFNA8P32881 189 aa12.59□□□□□ -0.39
SFSWAP-209ENST00000540469 PTPRNQ16849 979 aa12.59□□□□□ -0.39
SFSWAP-209ENST00000540469 SPANXN4Q5MJ08 99 aa12.59□□□□□ -0.39
SFSWAP-209ENST00000540469 ISG20Q96AZ6 181 aaKnown RBP12.59□□□□□ -0.39
SFSWAP-209ENST00000540469 OR52E6Q96RD3 313 aa12.59□□□□□ -0.39
SFSWAP-209ENST00000540469 SNX18Q96RF0 628 aa12.59□□□□□ -0.39
SFSWAP-209ENST00000540469 PHOX2BQ99453 314 aa12.59□□□□□ -0.39
SFSWAP-209ENST00000540469 BARD1Q99728 777 aaKnown RBP12.59□□□□□ -0.39
SFSWAP-209ENST00000540469 AARSD1Q9BTE6 412 aaKnown RBP12.59□□□□□ -0.39
SFSWAP-209ENST00000540469 IKZF5Q9H5V7 419 aa12.59□□□□□ -0.39
SFSWAP-209ENST00000540469 RNF167Q9H6Y7 350 aa12.59□□□□□ -0.39
SFSWAP-209ENST00000540469 RUBCNLQ9H714 662 aa12.59□□□□□ -0.39
SFSWAP-209ENST00000540469 PLSCR3Q9NRY6 295 aa12.59□□□□□ -0.39
SFSWAP-209ENST00000540469 FBXO10Q9UK96 956 aa12.59□□□□□ -0.39
SFSWAP-209ENST00000540469 FBXO9Q9UK97 447 aaPredicted RBP12.59□□□□□ -0.39
SFSWAP-209ENST00000540469 CLDN24A6NM45 220 aa12.59□□□□□ -0.39
SFSWAP-209ENST00000540469 J3KR12 359 aa12.59□□□□□ -0.39
SFSWAP-209ENST00000540469 KMOO15229 486 aa12.59□□□□□ -0.39
SFSWAP-209ENST00000540469 WARSP23381 471 aaKnown RBP12.59□□□□□ -0.39
SFSWAP-209ENST00000540469 HOXA11P31270 313 aaPredicted RBP12.59□□□□□ -0.39
SFSWAP-209ENST00000540469 SMU1Q2TAY7 513 aa12.59□□□□□ -0.39
SFSWAP-209ENST00000540469 BCL7AQ4VC05 210 aa12.59□□□□□ -0.39
SFSWAP-209ENST00000540469 RAP1GAP2Q684P5 730 aa12.59□□□□□ -0.39
SFSWAP-209ENST00000540469 KDELC1Q6UW63 502 aa12.59□□□□□ -0.39
SFSWAP-209ENST00000540469 STX19Q8N4C7 294 aa12.59□□□□□ -0.39
SFSWAP-209ENST00000540469 NETO1Q8TDF5 533 aa12.59□□□□□ -0.39
SFSWAP-209ENST00000540469 UBASH3BQ8TF42 649 aa12.59□□□□□ -0.39
SFSWAP-209ENST00000540469 ZNF566Q969W8 418 aa12.59□□□□□ -0.39
SFSWAP-209ENST00000540469 ZBED3Q96IU2 234 aaPredicted RBP12.59□□□□□ -0.39
SFSWAP-209ENST00000540469 PRRG3Q9BZD7 231 aa12.59□□□□□ -0.39
SFSWAP-209ENST00000540469 CPA4Q9UI42 421 aa12.59□□□□□ -0.39
SFSWAP-209ENST00000540469 PCTPQ9UKL6 214 aa12.59□□□□□ -0.39
SFSWAP-209ENST00000540469 MICAL3Q7RTP6 2002 aa12.59□□□□□ -0.39
SFSWAP-209ENST00000540469 A0A096LPI6 279 aa12.59□□□□□ -0.39
SFSWAP-209ENST00000540469 NFKBIEO00221 500 aa12.59□□□□□ -0.39
SFSWAP-209ENST00000540469 RPS17P08708 135 aaKnown RBP12.59□□□□□ -0.39
SFSWAP-209ENST00000540469 DDX5P17844 614 aaKnown RBP12.59□□□□□ -0.39
SFSWAP-209ENST00000540469 C21orf33P30042 268 aaPredicted RBP12.59□□□□□ -0.39
SFSWAP-209ENST00000540469 IDH2P48735 452 aaKnown RBP12.59□□□□□ -0.39
SFSWAP-209ENST00000540469 DMC1Q14565 340 aa12.59□□□□□ -0.39
SFSWAP-209ENST00000540469 CDK10Q15131 360 aa12.59□□□□□ -0.39
SFSWAP-209ENST00000540469 TAB1Q15750 504 aa12.59□□□□□ -0.39
SFSWAP-209ENST00000540469 RFTN2Q52LD8 501 aaPredicted RBP12.59□□□□□ -0.39
SFSWAP-209ENST00000540469 XKR7Q5GH72 579 aa12.59□□□□□ -0.39
SFSWAP-209ENST00000540469 Q6ZSR9 355 aa12.59□□□□□ -0.39
SFSWAP-209ENST00000540469 ANKRD46Q86W74 232 aa12.59□□□□□ -0.39
SFSWAP-209ENST00000540469 CADM2Q8N3J6 435 aa12.59□□□□□ -0.39
SFSWAP-209ENST00000540469 TOP6BLQ8N6T0 577 aa12.59□□□□□ -0.39
SFSWAP-209ENST00000540469 SENP8Q96LD8 212 aa12.59□□□□□ -0.39
SFSWAP-209ENST00000540469 CLSTN3Q9BQT9 956 aa12.59□□□□□ -0.39
SFSWAP-209ENST00000540469 KLHL20Q9Y2M5 609 aa12.59□□□□□ -0.39
SFSWAP-209ENST00000540469 PABPN1LA6NDY0 278 aaKnown RBP12.58□□□□□ -0.4
SFSWAP-209ENST00000540469 AP3D1O14617 1153 aa12.58□□□□□ -0.4
SFSWAP-209ENST00000540469 VPS26AO75436 327 aa12.58□□□□□ -0.4
SFSWAP-209ENST00000540469 USP2O75604 605 aaPredicted RBP12.58□□□□□ -0.4
SFSWAP-209ENST00000540469 ALX3O95076 343 aa12.58□□□□□ -0.4
SFSWAP-209ENST00000540469 PAPSS2O95340 614 aaPredicted RBP12.58□□□□□ -0.4
SFSWAP-209ENST00000540469 PRR35P0CG20 571 aa12.58□□□□□ -0.4
SFSWAP-209ENST00000540469 ITGAMP11215 1152 aa12.58□□□□□ -0.4
SFSWAP-209ENST00000540469 NUDT6P53370 316 aa12.58□□□□□ -0.4
SFSWAP-209ENST00000540469 SEMA3AQ14563 771 aa12.58□□□□□ -0.4
SFSWAP-209ENST00000540469 MAD2L1BPQ15013 274 aaPredicted RBP12.58□□□□□ -0.4
SFSWAP-209ENST00000540469 GPR153Q6NV75 609 aa12.58□□□□□ -0.4
SFSWAP-209ENST00000540469 C11orf74Q86VG3 221 aa12.58□□□□□ -0.4
SFSWAP-209ENST00000540469 ELMOD2Q8IZ81 293 aa12.58□□□□□ -0.4
SFSWAP-209ENST00000540469 NLGN4XQ8N0W4 816 aa12.58□□□□□ -0.4
SFSWAP-209ENST00000540469 DTX3Q8N9I9 347 aa12.58□□□□□ -0.4
SFSWAP-209ENST00000540469 IL17RDQ8NFM7 739 aa12.58□□□□□ -0.4
SFSWAP-209ENST00000540469 OR6F1Q8NGZ6 308 aa12.58□□□□□ -0.4
SFSWAP-209ENST00000540469 FUBP1Q96AE4 644 aaKnown RBP12.58□□□□□ -0.4
SFSWAP-209ENST00000540469 LINGO1Q96FE5 620 aa12.58□□□□□ -0.4
SFSWAP-209ENST00000540469 PYURFQ96I23 114 aa12.58□□□□□ -0.4
SFSWAP-209ENST00000540469 TSEN34Q9BSV6 310 aaKnown RBP12.58□□□□□ -0.4
SFSWAP-209ENST00000540469 BTBD2Q9BX70 525 aa12.58□□□□□ -0.4
SFSWAP-209ENST00000540469 OR2A25A4D2G3 310 aa12.58□□□□□ -0.4
SFSWAP-209ENST00000540469 EPHA2P29317 976 aa12.58□□□□□ -0.4
SFSWAP-209ENST00000540469 ELP6Q0PNE2 266 aa12.58□□□□□ -0.4
SFSWAP-209ENST00000540469 ARMCX4Q5H9R4 360 aa12.58□□□□□ -0.4
SFSWAP-209ENST00000540469 NRARPQ7Z6K4 114 aa12.58□□□□□ -0.4
SFSWAP-209ENST00000540469 IPCEF1Q8WWN9 437 aaPredicted RBP12.58□□□□□ -0.4
SFSWAP-209ENST00000540469 RMDN1Q96DB5 314 aa12.58□□□□□ -0.4
SFSWAP-209ENST00000540469 PGAP3Q96FM1 320 aaPredicted RBP12.58□□□□□ -0.4
SFSWAP-209ENST00000540469 OR51E2Q9H255 320 aa12.58□□□□□ -0.4
SFSWAP-209ENST00000540469 DCAF13Q9NV06 445 aaKnown RBP12.58□□□□□ -0.4
SFSWAP-209ENST00000540469 COQ3Q9NZJ6 369 aa12.58□□□□□ -0.4
SFSWAP-209ENST00000540469 ZNF225Q9UK10 706 aa12.58□□□□□ -0.4
SFSWAP-209ENST00000540469 IKZF3Q9UKT9 509 aa12.58□□□□□ -0.4
SFSWAP-209ENST00000540469 MKLN1Q9UL63 735 aa12.58□□□□□ -0.4
SFSWAP-209ENST00000540469 SEC22BO75396 215 aa12.58□□□□□ -0.4
SFSWAP-209ENST00000540469 RPP40O75818 363 aaKnown RBP12.58□□□□□ -0.4
SFSWAP-209ENST00000540469 GUCA1CO95843 209 aa12.58□□□□□ -0.4
SFSWAP-209ENST00000540469 HOXD8P13378 290 aaPredicted RBP12.58□□□□□ -0.4
SFSWAP-209ENST00000540469 BMP1P13497 986 aa12.58□□□□□ -0.4
SFSWAP-209ENST00000540469 HTR3AP46098 478 aa12.58□□□□□ -0.4
SFSWAP-209ENST00000540469 ERVPABLB-1P60509 514 aa12.58□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 101.4 ms