RNA–Protein interactions for RNA: ENST00000493341.1

VPS13A-212, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 2

Gene VPS13A, Length 2,001 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-212ENST00000493341 PTBP3O95758 552 aaKnown RBP4.48□□□□□ -1.69
VPS13A-212ENST00000493341 SCP2P22307 547 aa4.48□□□□□ -1.69
VPS13A-212ENST00000493341 SFNP31947 248 aa4.48□□□□□ -1.69
VPS13A-212ENST00000493341 ARHGAP25P42331 645 aa4.48□□□□□ -1.69
VPS13A-212ENST00000493341 CRYZQ08257 329 aaKnown RBP4.48□□□□□ -1.69
VPS13A-212ENST00000493341 GPR18Q14330 331 aa4.48□□□□□ -1.69
VPS13A-212ENST00000493341 UGP2Q16851 508 aa4.48□□□□□ -1.69
VPS13A-212ENST00000493341 WASHC2DQ5SRD0 308 aa4.48□□□□□ -1.69
VPS13A-212ENST00000493341 LCE3BQ5TA77 95 aa4.48□□□□□ -1.69
VPS13A-212ENST00000493341 C12orf60Q5U649 245 aa4.48□□□□□ -1.69
VPS13A-212ENST00000493341 TYW3Q6IPR3 259 aaKnown RBP4.48□□□□□ -1.69
VPS13A-212ENST00000493341 PARM1Q6UWI2 310 aa4.48□□□□□ -1.69
VPS13A-212ENST00000493341 Q6ZSV7 163 aa4.48□□□□□ -1.69
VPS13A-212ENST00000493341 ZNF627Q7L945 461 aa4.48□□□□□ -1.69
VPS13A-212ENST00000493341 CTU1Q7Z7A3 348 aaKnown RBP4.48□□□□□ -1.69
VPS13A-212ENST00000493341 APCDD1Q8J025 514 aa4.48□□□□□ -1.69
VPS13A-212ENST00000493341 VANGL1Q8TAA9 524 aaPredicted RBP4.48□□□□□ -1.69
VPS13A-212ENST00000493341 LARP4BQ92615 738 aaKnown RBP4.48□□□□□ -1.69
VPS13A-212ENST00000493341 TRIM44Q96DX7 344 aaPredicted RBP4.48□□□□□ -1.69
VPS13A-212ENST00000493341 C20orf173Q96LM9 149 aa4.48□□□□□ -1.69
VPS13A-212ENST00000493341 PCYT2Q99447 389 aa4.48□□□□□ -1.69
VPS13A-212ENST00000493341 SLX1AQ9BQ83 275 aa4.48□□□□□ -1.69
VPS13A-212ENST00000493341 SLC2A11Q9BYW1 496 aa4.48□□□□□ -1.69
VPS13A-212ENST00000493341 S1PR5Q9H228 398 aa4.48□□□□□ -1.69
VPS13A-212ENST00000493341 CATSPERBQ9H7T0 1116 aa4.48□□□□□ -1.69
VPS13A-212ENST00000493341 Q9N2K0 584 aa4.48□□□□□ -1.69
VPS13A-212ENST00000493341 TRMT6Q9UJA5 497 aaKnown RBP4.48□□□□□ -1.69
VPS13A-212ENST00000493341 EXOC7Q9UPT5 735 aa4.48□□□□□ -1.69
VPS13A-212ENST00000493341 KCNK6Q9Y257 313 aa4.48□□□□□ -1.69
VPS13A-212ENST00000493341 PRAG1Q86YV5 1406 aa4.47□□□□□ -1.69
VPS13A-212ENST00000493341 ATXN2Q99700 1313 aaKnown RBP4.47□□□□□ -1.69
VPS13A-212ENST00000493341 HYKKA2RU49 373 aa4.47□□□□□ -1.69
VPS13A-212ENST00000493341 ZNF814B7Z6K7 855 aa4.47□□□□□ -1.69
VPS13A-212ENST00000493341 MS4A18H0YCH9 400 aa4.47□□□□□ -1.69
VPS13A-212ENST00000493341 HSF2BPO75031 334 aa4.47□□□□□ -1.69
VPS13A-212ENST00000493341 BMP10O95393 424 aa4.47□□□□□ -1.69
VPS13A-212ENST00000493341 LCATP04180 440 aa4.47□□□□□ -1.69
VPS13A-212ENST00000493341 SERPING1P05155 500 aa4.47□□□□□ -1.69
VPS13A-212ENST00000493341 ARF4P18085 180 aaPredicted RBP4.47□□□□□ -1.69
VPS13A-212ENST00000493341 KCNJ10P78508 379 aa4.47□□□□□ -1.69
VPS13A-212ENST00000493341 KARSQ15046 597 aaKnown RBP4.47□□□□□ -1.69
VPS13A-212ENST00000493341 KCTD11Q693B1 232 aa4.47□□□□□ -1.69
VPS13A-212ENST00000493341 MAP7D3Q8IWC1 876 aa4.47□□□□□ -1.69
VPS13A-212ENST00000493341 ELMOD2Q8IZ81 293 aa4.47□□□□□ -1.69
VPS13A-212ENST00000493341 SEMA6DQ8NFY4 1073 aa4.47□□□□□ -1.69
VPS13A-212ENST00000493341 DAZLQ92904 295 aaKnown RBP4.47□□□□□ -1.69
VPS13A-212ENST00000493341 DTD2Q96FN9 168 aa4.47□□□□□ -1.69
VPS13A-212ENST00000493341 NAP1L3Q99457 506 aaPredicted RBP4.47□□□□□ -1.69
VPS13A-212ENST00000493341 RAD9AQ99638 391 aa4.47□□□□□ -1.69
VPS13A-212ENST00000493341 TEX13AQ9BXU3 409 aaPredicted RBP4.47□□□□□ -1.69
VPS13A-212ENST00000493341 SPRY4Q9C004 299 aa4.47□□□□□ -1.69
VPS13A-212ENST00000493341 ISCUQ9H1K1 167 aa4.47□□□□□ -1.69
VPS13A-212ENST00000493341 CUEDC2Q9H467 287 aa4.47□□□□□ -1.69
VPS13A-212ENST00000493341 MAD2L2Q9UI95 211 aa4.47□□□□□ -1.69
VPS13A-212ENST00000493341 CCPG1Q9ULG6 757 aa4.47□□□□□ -1.69
VPS13A-212ENST00000493341 NUDCQ9Y266 331 aa4.47□□□□□ -1.69
VPS13A-212ENST00000493341 A0A1W2PPK0 400 aa4.46□□□□□ -1.69
VPS13A-212ENST00000493341 TMEM191CA6NGB0 347 aa4.46□□□□□ -1.69
VPS13A-212ENST00000493341 ADAM10O14672 748 aa4.46□□□□□ -1.69
VPS13A-212ENST00000493341 RASGRF2O14827 1237 aa4.46□□□□□ -1.69
VPS13A-212ENST00000493341 PEX11AO75192 247 aa4.46□□□□□ -1.69
VPS13A-212ENST00000493341 IFNA2P01563 188 aa4.46□□□□□ -1.69
VPS13A-212ENST00000493341 NAGAP17050 411 aa4.46□□□□□ -1.69
VPS13A-212ENST00000493341 MPGP29372 298 aa4.46□□□□□ -1.69
VPS13A-212ENST00000493341 ENTPD1P49961 510 aa4.46□□□□□ -1.69
VPS13A-212ENST00000493341 CLCNKAP51800 687 aa4.46□□□□□ -1.69
VPS13A-212ENST00000493341 TGFB2P61812 414 aa4.46□□□□□ -1.69
VPS13A-212ENST00000493341 PDE1BQ01064 536 aa4.46□□□□□ -1.69
VPS13A-212ENST00000493341 PNRC1Q12796 327 aaPredicted RBP4.46□□□□□ -1.69
VPS13A-212ENST00000493341 GAMTQ14353 236 aa4.46□□□□□ -1.69
VPS13A-212ENST00000493341 CCDC40Q4G0X9 1142 aa4.46□□□□□ -1.69
VPS13A-212ENST00000493341 SYT14P1Q58G82 188 aa4.46□□□□□ -1.69
VPS13A-212ENST00000493341 PRSS55Q6UWB4 352 aaPredicted RBP4.46□□□□□ -1.69
VPS13A-212ENST00000493341 ZNF66Q6ZN08 573 aa4.46□□□□□ -1.69
VPS13A-212ENST00000493341 C1orf186Q6ZWK4 172 aa4.46□□□□□ -1.69
VPS13A-212ENST00000493341 MARK2Q7KZI7 788 aaKnown RBP4.46□□□□□ -1.69
VPS13A-212ENST00000493341 ARMC9Q7Z3E5 817 aa4.46□□□□□ -1.69
VPS13A-212ENST00000493341 ARHGAP24Q8N264 748 aa4.46□□□□□ -1.69
VPS13A-212ENST00000493341 KDM8Q8N371 416 aa4.46□□□□□ -1.69
VPS13A-212ENST00000493341 PROX1Q92786 737 aa4.46□□□□□ -1.69
VPS13A-212ENST00000493341 CTAGE1Q96RT6 745 aa4.46□□□□□ -1.69
VPS13A-212ENST00000493341 ATG101Q9BSB4 218 aa4.46□□□□□ -1.69
VPS13A-212ENST00000493341 MMTAG2Q9BU76 263 aaKnown RBP4.46□□□□□ -1.69
VPS13A-212ENST00000493341 PRRG4Q9BZD6 226 aa4.46□□□□□ -1.69
VPS13A-212ENST00000493341 NOX4Q9NPH5 578 aa4.46□□□□□ -1.69
VPS13A-212ENST00000493341 SEMA4GQ9NTN9 838 aa4.46□□□□□ -1.69
VPS13A-212ENST00000493341 MIOSQ9NXC5 875 aa4.46□□□□□ -1.69
VPS13A-212ENST00000493341 PCDHA12Q9UN75 941 aa4.46□□□□□ -1.69
VPS13A-212ENST00000493341 EXOC6BQ9Y2D4 811 aa4.46□□□□□ -1.69
VPS13A-212ENST00000493341 RRP15Q9Y3B9 282 aaKnown RBP4.46□□□□□ -1.69
VPS13A-212ENST00000493341 TMEM272A0A1B0GTI8 110 aa4.46□□□□□ -1.7
VPS13A-212ENST00000493341 C2orf92A0A1B0GVN3 265 aa4.46□□□□□ -1.7
VPS13A-212ENST00000493341 MANSC4A6NHS7 340 aaPredicted RBP4.46□□□□□ -1.7
VPS13A-212ENST00000493341 LINC01548A6NM66 108 aa4.46□□□□□ -1.7
VPS13A-212ENST00000493341 TGFAP01135 160 aa4.46□□□□□ -1.7
VPS13A-212ENST00000493341 AREGP15514 252 aa4.46□□□□□ -1.7
VPS13A-212ENST00000493341 CHRNA3P32297 505 aa4.46□□□□□ -1.7
VPS13A-212ENST00000493341 PRPHP41219 470 aa4.46□□□□□ -1.7
VPS13A-212ENST00000493341 ZP1P60852 638 aa4.46□□□□□ -1.7
VPS13A-212ENST00000493341 NHLH1Q02575 133 aa4.46□□□□□ -1.7
Retrieved 100 of 20,778 RNA–protein pairs in 68.1 ms