RNA–Protein interactions for RNA: ENST00000472524.1

CCDC88B-205, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 779 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-205ENST00000472524 TBC1D21Q8IYX1 336 aa15.22■□□□□ 0.03
CCDC88B-205ENST00000472524 OR1L3Q8NH93 324 aa15.22■□□□□ 0.03
CCDC88B-205ENST00000472524 LKAAEAR1Q8TD35 194 aa15.22■□□□□ 0.03
CCDC88B-205ENST00000472524 TRAPPC9Q96Q05 1148 aa15.22■□□□□ 0.03
CCDC88B-205ENST00000472524 PITPNM3Q9BZ71 974 aa15.22■□□□□ 0.03
CCDC88B-205ENST00000472524 EIF2B3Q9NR50 452 aaKnown RBP15.22■□□□□ 0.03
CCDC88B-205ENST00000472524 CHRAC1Q9NRG0 131 aa15.22■□□□□ 0.03
CCDC88B-205ENST00000472524 CATSPERZQ9NTU4 200 aa15.22■□□□□ 0.03
CCDC88B-205ENST00000472524 MARCH4Q9P2E8 410 aaPredicted RBP15.22■□□□□ 0.03
CCDC88B-205ENST00000472524 ANAPC5Q9UJX4 755 aa15.22■□□□□ 0.03
CCDC88B-205ENST00000472524 DRG1Q9Y295 367 aaKnown RBP15.22■□□□□ 0.03
CCDC88B-205ENST00000472524 TP53TG5Q9Y2B4 290 aa15.22■□□□□ 0.03
CCDC88B-205ENST00000472524 ZKSCAN5Q9Y2L8 839 aa15.22■□□□□ 0.03
CCDC88B-205ENST00000472524 NBASA2RRP1 2371 aa15.22■□□□□ 0.03
CCDC88B-205ENST00000472524 IQCF5A8MTL0 148 aa15.21■□□□□ 0.03
CCDC88B-205ENST00000472524 BHMG1C9JSJ3 638 aaPredicted RBP15.21■□□□□ 0.03
CCDC88B-205ENST00000472524 UGT2B7P16662 529 aa15.21■□□□□ 0.03
CCDC88B-205ENST00000472524 CYP2A7P20853 494 aa15.21■□□□□ 0.03
CCDC88B-205ENST00000472524 PTPN4P29074 926 aa15.21■□□□□ 0.03
CCDC88B-205ENST00000472524 CCR7P32248 378 aa15.21■□□□□ 0.03
CCDC88B-205ENST00000472524 RPS15P62841 145 aaKnown RBP15.21■□□□□ 0.03
CCDC88B-205ENST00000472524 PLOD1Q02809 727 aaPredicted RBP15.21■□□□□ 0.03
CCDC88B-205ENST00000472524 HSPA14Q0VDF9 509 aa15.21■□□□□ 0.03
CCDC88B-205ENST00000472524 AARS2Q5JTZ9 985 aaKnown RBP15.21■□□□□ 0.03
CCDC88B-205ENST00000472524 SPESP1Q6UW49 350 aa15.21■□□□□ 0.03
CCDC88B-205ENST00000472524 UNC5AQ6ZN44 842 aa15.21■□□□□ 0.03
CCDC88B-205ENST00000472524 KRT222Q8N1A0 295 aa15.21■□□□□ 0.03
CCDC88B-205ENST00000472524 OTUD6BQ8N6M0 293 aa15.21■□□□□ 0.03
CCDC88B-205ENST00000472524 SLC38A9Q8NBW4 561 aa15.21■□□□□ 0.03
CCDC88B-205ENST00000472524 OR5K2Q8NHB8 316 aa15.21■□□□□ 0.03
CCDC88B-205ENST00000472524 CPT1BQ92523 772 aa15.21■□□□□ 0.03
CCDC88B-205ENST00000472524 PEX13Q92968 403 aa15.21■□□□□ 0.03
CCDC88B-205ENST00000472524 CLIP3Q96DZ5 547 aa15.21■□□□□ 0.03
CCDC88B-205ENST00000472524 TSSK1BQ9BXA7 367 aa15.21■□□□□ 0.03
CCDC88B-205ENST00000472524 SLC7A5P2Q9GIP4 190 aa15.21■□□□□ 0.03
CCDC88B-205ENST00000472524 CHST8Q9H2A9 424 aa15.21■□□□□ 0.03
CCDC88B-205ENST00000472524 POLG2Q9UHN1 485 aa15.21■□□□□ 0.03
CCDC88B-205ENST00000472524 TTC7AQ9ULT0 858 aaPredicted RBP15.21■□□□□ 0.03
CCDC88B-205ENST00000472524 MAN2B2Q9Y2E5 1009 aa15.21■□□□□ 0.03
CCDC88B-205ENST00000472524 CLEC18AA5D8T8 446 aa15.2■□□□□ 0.02
CCDC88B-205ENST00000472524 CD3EAPO15446 510 aaKnown RBP15.2■□□□□ 0.02
CCDC88B-205ENST00000472524 NRDCO43847 1150 aa15.2■□□□□ 0.02
CCDC88B-205ENST00000472524 KLK3P07288 261 aaPredicted RBP15.2■□□□□ 0.02
CCDC88B-205ENST00000472524 CHRM5P08912 532 aaPredicted RBP15.2■□□□□ 0.02
CCDC88B-205ENST00000472524 MGAT1P26572 445 aa15.2■□□□□ 0.02
CCDC88B-205ENST00000472524 NMBRP28336 390 aa15.2■□□□□ 0.02
CCDC88B-205ENST00000472524 VPS41P49754 854 aa15.2■□□□□ 0.02
CCDC88B-205ENST00000472524 TRIP13Q15645 432 aaPredicted RBP15.2■□□□□ 0.02
CCDC88B-205ENST00000472524 ZNF789Q5FWF6 425 aa15.2■□□□□ 0.02
CCDC88B-205ENST00000472524 CLEC18BQ6UXF7 455 aa15.2■□□□□ 0.02
CCDC88B-205ENST00000472524 C4orf22Q6V702 233 aa15.2■□□□□ 0.02
CCDC88B-205ENST00000472524 CDHR3Q6ZTQ4 885 aa15.2■□□□□ 0.02
CCDC88B-205ENST00000472524 VRK3Q8IV63 474 aa15.2■□□□□ 0.02
CCDC88B-205ENST00000472524 C19orf47Q8N9M1 422 aaKnown RBP15.2■□□□□ 0.02
CCDC88B-205ENST00000472524 CLEC18CQ8NCF0 446 aa15.2■□□□□ 0.02
CCDC88B-205ENST00000472524 CFAP61Q8NHU2 1237 aa15.2■□□□□ 0.02
CCDC88B-205ENST00000472524 N4BP2L2Q92802 583 aaPredicted RBP15.2■□□□□ 0.02
CCDC88B-205ENST00000472524 GPR87Q9BY21 358 aa15.2■□□□□ 0.02
CCDC88B-205ENST00000472524 IL22Q9GZX6 179 aa15.2■□□□□ 0.02
CCDC88B-205ENST00000472524 ACTR5Q9H9F9 607 aaPredicted RBP15.2■□□□□ 0.02
CCDC88B-205ENST00000472524 SYTL2Q9HCH5 934 aa15.2■□□□□ 0.02
CCDC88B-205ENST00000472524 SPHK1Q9NYA1 384 aa15.2■□□□□ 0.02
CCDC88B-205ENST00000472524 BFARQ9NZS9 450 aa15.2■□□□□ 0.02
CCDC88B-205ENST00000472524 FARSAQ9Y285 508 aaKnown RBP15.2■□□□□ 0.02
CCDC88B-205ENST00000472524 PPP2R2CQ9Y2T4 447 aa15.2■□□□□ 0.02
CCDC88B-205ENST00000472524 SPENQ96T58 3664 aaKnown RBP15.19■□□□□ 0.02
CCDC88B-205ENST00000472524 TCRBV7S3A2A0A539 114 aa15.19■□□□□ 0.02
CCDC88B-205ENST00000472524 MEN1O00255 615 aa15.19■□□□□ 0.02
CCDC88B-205ENST00000472524 PRMT5O14744 637 aaPredicted RBP15.19■□□□□ 0.02
CCDC88B-205ENST00000472524 TPBGLP0DKB5 382 aa15.19■□□□□ 0.02
CCDC88B-205ENST00000472524 TTPAP49638 278 aa15.19■□□□□ 0.02
CCDC88B-205ENST00000472524 ITGA1P56199 1179 aa15.19■□□□□ 0.02
CCDC88B-205ENST00000472524 KLRB1Q12918 225 aa15.19■□□□□ 0.02
CCDC88B-205ENST00000472524 IL10RAQ13651 578 aa15.19■□□□□ 0.02
CCDC88B-205ENST00000472524 DEFB110Q30KQ9 67 aa15.19■□□□□ 0.02
CCDC88B-205ENST00000472524 PLEKHS1Q5SXH7 462 aa15.19■□□□□ 0.02
CCDC88B-205ENST00000472524 PTRHD1Q6GMV3 140 aaKnown RBP15.19■□□□□ 0.02
CCDC88B-205ENST00000472524 LCN10Q6JVE6 187 aa15.19■□□□□ 0.02
CCDC88B-205ENST00000472524 CES3Q6UWW8 571 aa15.19■□□□□ 0.02
CCDC88B-205ENST00000472524 SYVN1Q86TM6 617 aa15.19■□□□□ 0.02
CCDC88B-205ENST00000472524 SLC22A15Q8IZD6 547 aa15.19■□□□□ 0.02
CCDC88B-205ENST00000472524 DSELQ8IZU8 1212 aa15.19■□□□□ 0.02
CCDC88B-205ENST00000472524 PRELID2Q8N945 189 aa15.19■□□□□ 0.02
CCDC88B-205ENST00000472524 ASZ1Q8WWH4 475 aa15.19■□□□□ 0.02
CCDC88B-205ENST00000472524 SGSM3Q96HU1 749 aa15.19■□□□□ 0.02
CCDC88B-205ENST00000472524 OR2A14Q96R47 310 aa15.19■□□□□ 0.02
CCDC88B-205ENST00000472524 CARD6Q9BX69 1037 aa15.19■□□□□ 0.02
CCDC88B-205ENST00000472524 AP1M1Q9BXS5 423 aa15.19■□□□□ 0.02
CCDC88B-205ENST00000472524 TREX1Q9NSU2 369 aa15.19■□□□□ 0.02
CCDC88B-205ENST00000472524 PCMTD2Q9NV79 361 aa15.19■□□□□ 0.02
CCDC88B-205ENST00000472524 SYBUQ9NX95 663 aa15.19■□□□□ 0.02
CCDC88B-205ENST00000472524 CIDEBQ9UHD4 219 aa15.19■□□□□ 0.02
CCDC88B-205ENST00000472524 SERTAD3Q9UJW9 196 aa15.19■□□□□ 0.02
CCDC88B-205ENST00000472524 A0A0J9YY10 115 aa15.18■□□□□ 0.02
CCDC88B-205ENST00000472524 ISM1B1AKI9 464 aa15.18■□□□□ 0.02
CCDC88B-205ENST00000472524 E7EQ34 232 aa15.18■□□□□ 0.02
CCDC88B-205ENST00000472524 MKRN2OSH3BPM6 223 aa15.18■□□□□ 0.02
CCDC88B-205ENST00000472524 AP3B1O00203 1094 aa15.18■□□□□ 0.02
CCDC88B-205ENST00000472524 KDM1AO60341 852 aa15.18■□□□□ 0.02
CCDC88B-205ENST00000472524 NDUFS3O75489 264 aa15.18■□□□□ 0.02
Retrieved 100 of 20,778 RNA–protein pairs in 26.3 ms