RNA–Protein interactions for RNA: ENST00000348544.4

VPS39-202, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS39, Length 2,661 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-202ENST00000348544 OR52B6Q8NGF0 335 aa6.66□□□□□ -1.34
VPS39-202ENST00000348544 ANGPTL6Q8NI99 470 aa6.66□□□□□ -1.34
VPS39-202ENST00000348544 GIPC2Q8TF65 315 aa6.66□□□□□ -1.34
VPS39-202ENST00000348544 JPH3Q8WXH2 748 aaPredicted RBP6.66□□□□□ -1.34
VPS39-202ENST00000348544 NCLNQ969V3 563 aa6.66□□□□□ -1.34
VPS39-202ENST00000348544 FUBP1Q96AE4 644 aaKnown RBP6.66□□□□□ -1.34
VPS39-202ENST00000348544 ZFYVE19Q96K21 471 aa6.66□□□□□ -1.34
VPS39-202ENST00000348544 MED10Q9BTT4 135 aa6.66□□□□□ -1.34
VPS39-202ENST00000348544 CENPOQ9BU64 300 aa6.66□□□□□ -1.34
VPS39-202ENST00000348544 OR51E2Q9H255 320 aa6.66□□□□□ -1.34
VPS39-202ENST00000348544 AS3MTQ9HBK9 375 aa6.66□□□□□ -1.34
VPS39-202ENST00000348544 TRIM39Q9HCM9 518 aa6.66□□□□□ -1.34
VPS39-202ENST00000348544 CCNB1IP1Q9NPC3 277 aa6.66□□□□□ -1.34
VPS39-202ENST00000348544 CRTAC1Q9NQ79 661 aa6.66□□□□□ -1.34
VPS39-202ENST00000348544 HOXC10Q9NYD6 342 aa6.66□□□□□ -1.34
VPS39-202ENST00000348544 CCDC59Q9P031 241 aaKnown RBP6.66□□□□□ -1.34
VPS39-202ENST00000348544 KLK14Q9P0G3 267 aa6.66□□□□□ -1.34
VPS39-202ENST00000348544 RNF112Q9ULX5 631 aa6.66□□□□□ -1.34
VPS39-202ENST00000348544 PCDHB8Q9UN66 801 aa6.66□□□□□ -1.34
VPS39-202ENST00000348544 ABCG2Q9UNQ0 655 aa6.66□□□□□ -1.34
VPS39-202ENST00000348544 HSPE1-MOB4S4R3N1 261 aa6.66□□□□□ -1.34
VPS39-202ENST00000348544 LOC100506127A0A0U1RQW1 187 aa6.65□□□□□ -1.34
VPS39-202ENST00000348544 NPEPPSL1A6NEC2 478 aa6.65□□□□□ -1.34
VPS39-202ENST00000348544 GABRDO14764 452 aa6.65□□□□□ -1.34
VPS39-202ENST00000348544 SCELO95171 688 aa6.65□□□□□ -1.34
VPS39-202ENST00000348544 MED26O95402 600 aa6.65□□□□□ -1.34
VPS39-202ENST00000348544 PEX11BO96011 259 aa6.65□□□□□ -1.34
VPS39-202ENST00000348544 APOA1P02647 267 aa6.65□□□□□ -1.34
VPS39-202ENST00000348544 RETP07949 1114 aa6.65□□□□□ -1.34
VPS39-202ENST00000348544 MSH3P20585 1137 aa6.65□□□□□ -1.34
VPS39-202ENST00000348544 CYP2A7P20853 494 aa6.65□□□□□ -1.34
VPS39-202ENST00000348544 WARSP23381 471 aaKnown RBP6.65□□□□□ -1.34
VPS39-202ENST00000348544 CD86P42081 329 aa6.65□□□□□ -1.34
VPS39-202ENST00000348544 HK3P52790 923 aa6.65□□□□□ -1.34
VPS39-202ENST00000348544 CRISP3P54108 245 aa6.65□□□□□ -1.34
VPS39-202ENST00000348544 DEFA1P59665 94 aa6.65□□□□□ -1.34
VPS39-202ENST00000348544 DEFA3P59666 94 aa6.65□□□□□ -1.34
VPS39-202ENST00000348544 ERVPABLB-1P60509 514 aa6.65□□□□□ -1.34
VPS39-202ENST00000348544 CXCL9Q07325 125 aa6.65□□□□□ -1.34
VPS39-202ENST00000348544 KRR1Q13601 381 aaKnown RBP6.65□□□□□ -1.34
VPS39-202ENST00000348544 PTGR1Q14914 329 aa6.65□□□□□ -1.34
VPS39-202ENST00000348544 RFTN2Q52LD8 501 aaPredicted RBP6.65□□□□□ -1.34
VPS39-202ENST00000348544 LETMD1Q6P1Q0 360 aa6.65□□□□□ -1.34
VPS39-202ENST00000348544 GPRIN3Q6ZVF9 776 aa6.65□□□□□ -1.34
VPS39-202ENST00000348544 TTC29Q8NA56 475 aaPredicted RBP6.65□□□□□ -1.34
VPS39-202ENST00000348544 SPERTQ8NA61 448 aa6.65□□□□□ -1.34
VPS39-202ENST00000348544 OR52E4Q8NGH9 312 aa6.65□□□□□ -1.34
VPS39-202ENST00000348544 STAG3L4Q8TBR4 150 aa6.65□□□□□ -1.34
VPS39-202ENST00000348544 SLC13A3Q8WWT9 602 aa6.65□□□□□ -1.34
VPS39-202ENST00000348544 RASSF5Q8WWW0 418 aa6.65□□□□□ -1.34
VPS39-202ENST00000348544 FYTTD1Q96QD9 318 aaKnown RBP6.65□□□□□ -1.34
VPS39-202ENST00000348544 C1QTNF3Q9BXJ4 246 aa6.65□□□□□ -1.34
VPS39-202ENST00000348544 SLA2Q9H6Q3 261 aa6.65□□□□□ -1.34
VPS39-202ENST00000348544 MAGIXQ9H6Y5 334 aa6.65□□□□□ -1.34
VPS39-202ENST00000348544 PDGFCQ9NRA1 345 aa6.65□□□□□ -1.34
VPS39-202ENST00000348544 TMEM45AQ9NWC5 275 aa6.65□□□□□ -1.34
VPS39-202ENST00000348544 SIRT5Q9NXA8 310 aa6.65□□□□□ -1.34
VPS39-202ENST00000348544 ERAP1Q9NZ08 941 aa6.65□□□□□ -1.34
VPS39-202ENST00000348544 NIPSNAP3AQ9UFN0 247 aaPredicted RBP6.65□□□□□ -1.34
VPS39-202ENST00000348544 EIF2B4Q9UI10 523 aaKnown RBP6.65□□□□□ -1.34
VPS39-202ENST00000348544 MOSPD1Q9UJG1 213 aa6.65□□□□□ -1.34
VPS39-202ENST00000348544 ERVW-1Q9UQF0 538 aa6.65□□□□□ -1.34
VPS39-202ENST00000348544 PRELID1Q9Y255 219 aa6.65□□□□□ -1.34
VPS39-202ENST00000348544 PCM1Q15154 2024 aa6.65□□□□□ -1.34
VPS39-202ENST00000348544 SMIM28A0A1B0GU29 152 aa6.65□□□□□ -1.35
VPS39-202ENST00000348544 HHLA1C9JL84 531 aa6.65□□□□□ -1.35
VPS39-202ENST00000348544 PDHXO00330 501 aa6.65□□□□□ -1.35
VPS39-202ENST00000348544 E2F3O00716 465 aa6.65□□□□□ -1.35
VPS39-202ENST00000348544 CTDSP2O14595 271 aa6.65□□□□□ -1.35
VPS39-202ENST00000348544 CD3EAPO15446 510 aaKnown RBP6.65□□□□□ -1.35
VPS39-202ENST00000348544 TLL1O43897 1013 aa6.65□□□□□ -1.35
VPS39-202ENST00000348544 MRPS14O60783 128 aaKnown RBP6.65□□□□□ -1.35
VPS39-202ENST00000348544 DIRAS1O95057 198 aa6.65□□□□□ -1.35
VPS39-202ENST00000348544 CCR1P32246 355 aa6.65□□□□□ -1.35
VPS39-202ENST00000348544 IFNA8P32881 189 aa6.65□□□□□ -1.35
VPS39-202ENST00000348544 SLC19A1P41440 591 aa6.65□□□□□ -1.35
VPS39-202ENST00000348544 MAGEA2P43356 314 aa6.65□□□□□ -1.35
VPS39-202ENST00000348544 SLC15A1P46059 708 aa6.65□□□□□ -1.35
VPS39-202ENST00000348544 TAF6P49848 677 aa6.65□□□□□ -1.35
VPS39-202ENST00000348544 ZNF135P52742 658 aaPredicted RBP6.65□□□□□ -1.35
VPS39-202ENST00000348544 DSC2Q02487 901 aa6.65□□□□□ -1.35
VPS39-202ENST00000348544 STARD3Q14849 445 aa6.65□□□□□ -1.35
VPS39-202ENST00000348544 TIGD6Q17RP2 521 aa6.65□□□□□ -1.35
VPS39-202ENST00000348544 DCAF4L1Q3SXM0 396 aa6.65□□□□□ -1.35
VPS39-202ENST00000348544 PARP15Q460N3 678 aa6.65□□□□□ -1.35
VPS39-202ENST00000348544 RAB41Q5JT25 222 aa6.65□□□□□ -1.35
VPS39-202ENST00000348544 SIRPB2Q5JXA9 342 aa6.65□□□□□ -1.35
VPS39-202ENST00000348544 WSCD1Q658N2 575 aa6.65□□□□□ -1.35
VPS39-202ENST00000348544 ZNF517Q6ZMY9 492 aaPredicted RBP6.65□□□□□ -1.35
VPS39-202ENST00000348544 EFL1Q7Z2Z2 1120 aaKnown RBP6.65□□□□□ -1.35
VPS39-202ENST00000348544 SNX20Q7Z614 316 aa6.65□□□□□ -1.35
VPS39-202ENST00000348544 FAM20CQ8IXL6 584 aa6.65□□□□□ -1.35
VPS39-202ENST00000348544 PLPP6Q8IY26 295 aa6.65□□□□□ -1.35
VPS39-202ENST00000348544 ENTHD1Q8IYW4 607 aa6.65□□□□□ -1.35
VPS39-202ENST00000348544 ELMOD2Q8IZ81 293 aa6.65□□□□□ -1.35
VPS39-202ENST00000348544 IMP4Q96G21 291 aaKnown RBP6.65□□□□□ -1.35
VPS39-202ENST00000348544 CEP295NLQ96MC4 621 aa6.65□□□□□ -1.35
VPS39-202ENST00000348544 PHOX2BQ99453 314 aa6.65□□□□□ -1.35
VPS39-202ENST00000348544 SH3GL1Q99961 368 aa6.65□□□□□ -1.35
VPS39-202ENST00000348544 SGIP1Q9BQI5 828 aa6.65□□□□□ -1.35
Retrieved 100 of 20,778 RNA–protein pairs in 23.7 ms