RNA–Protein interactions for RNA: ENST00000339859.8

USP54-201, Transcript of ubiquitin specific peptidase 54, humanhuman

APPRIS P1 TSL 5 BASIC

Gene USP54, Length 6,247 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-201ENST00000339859 ZNF689Q96CS4 500 aaPredicted RBP9.95□□□□□ -0.82
USP54-201ENST00000339859 KCTD3Q9Y597 815 aa9.95□□□□□ -0.82
USP54-201ENST00000339859 CACNG3O60359 315 aa9.95□□□□□ -0.82
USP54-201ENST00000339859 PIAS1O75925 651 aa9.95□□□□□ -0.82
USP54-201ENST00000339859 HBQ1P09105 142 aa9.95□□□□□ -0.82
USP54-201ENST00000339859 PRPS2P11908 318 aa9.95□□□□□ -0.82
USP54-201ENST00000339859 MYCLP1P12525 358 aaPredicted RBP9.95□□□□□ -0.82
USP54-201ENST00000339859 JUPP14923 745 aa9.95□□□□□ -0.82
USP54-201ENST00000339859 ITGA2P17301 1181 aa9.95□□□□□ -0.82
USP54-201ENST00000339859 ATP5A1P25705 553 aaKnown RBP9.95□□□□□ -0.82
USP54-201ENST00000339859 TAS2R39P59534 338 aa9.95□□□□□ -0.82
USP54-201ENST00000339859 ZNF460Q14592 562 aa9.95□□□□□ -0.82
USP54-201ENST00000339859 Q6ZSR6 202 aa9.95□□□□□ -0.82
USP54-201ENST00000339859 TRIM74Q86UV6 250 aa9.95□□□□□ -0.82
USP54-201ENST00000339859 MCEMP1Q8IX19 187 aa9.95□□□□□ -0.82
USP54-201ENST00000339859 TRPV3Q8NET8 790 aa9.95□□□□□ -0.82
USP54-201ENST00000339859 SLC5A11Q8WWX8 675 aa9.95□□□□□ -0.82
USP54-201ENST00000339859 MR1Q95460 341 aa9.95□□□□□ -0.82
USP54-201ENST00000339859 PNO1Q9NRX1 252 aaKnown RBP9.95□□□□□ -0.82
USP54-201ENST00000339859 RUVBL1Q9Y265 456 aaKnown RBP9.95□□□□□ -0.82
USP54-201ENST00000339859 PLK4O00444 970 aa9.94□□□□□ -0.82
USP54-201ENST00000339859 MUSKO15146 869 aa9.94□□□□□ -0.82
USP54-201ENST00000339859 DCXO43602 365 aa9.94□□□□□ -0.82
USP54-201ENST00000339859 ALBP02768 609 aa9.94□□□□□ -0.82
USP54-201ENST00000339859 POLR2CP19387 275 aaPredicted RBP9.94□□□□□ -0.82
USP54-201ENST00000339859 SLC26A3P40879 764 aa9.94□□□□□ -0.82
USP54-201ENST00000339859 BIKQ13323 160 aa9.94□□□□□ -0.82
USP54-201ENST00000339859 PKDCCQ504Y2 493 aa9.94□□□□□ -0.82
USP54-201ENST00000339859 OR6C4Q8NGE1 309 aa9.94□□□□□ -0.82
USP54-201ENST00000339859 SCRN2Q96FV2 425 aa9.94□□□□□ -0.82
USP54-201ENST00000339859 PHF11Q9UIL8 331 aa9.94□□□□□ -0.82
USP54-201ENST00000339859 CFL2Q9Y281 166 aa9.94□□□□□ -0.82
USP54-201ENST00000339859 SLC9A8Q9Y2E8 581 aa9.94□□□□□ -0.82
USP54-201ENST00000339859 TCRBV7S3A2A0A539 114 aa9.94□□□□□ -0.82
USP54-201ENST00000339859 LINC01565O15544 149 aa9.94□□□□□ -0.82
USP54-201ENST00000339859 HYAL1Q12794 435 aa9.94□□□□□ -0.82
USP54-201ENST00000339859 PAQR9Q6ZVX9 377 aa9.94□□□□□ -0.82
USP54-201ENST00000339859 DEFB107AQ8IZN7 70 aa9.94□□□□□ -0.82
USP54-201ENST00000339859 DCAKDQ8WVC6 231 aa9.94□□□□□ -0.82
USP54-201ENST00000339859 GFM1Q96RP9 751 aaKnown RBP9.94□□□□□ -0.82
USP54-201ENST00000339859 CNPPD1Q9BV87 410 aa9.94□□□□□ -0.82
USP54-201ENST00000339859 SPATA7Q9P0W8 599 aa9.94□□□□□ -0.82
USP54-201ENST00000339859 LGALS13Q9UHV8 139 aa9.94□□□□□ -0.82
USP54-201ENST00000339859 HAO1Q9UJM8 370 aa9.94□□□□□ -0.82
USP54-201ENST00000339859 DNMT3AQ9Y6K1 912 aaPredicted RBP9.94□□□□□ -0.82
USP54-201ENST00000339859 BCAT2O15382 392 aaPredicted RBP9.94□□□□□ -0.82
USP54-201ENST00000339859 NTRK1P04629 796 aa9.94□□□□□ -0.82
USP54-201ENST00000339859 ZNF23P17027 643 aa9.94□□□□□ -0.82
USP54-201ENST00000339859 C1orf61Q13536 156 aa9.94□□□□□ -0.82
USP54-201ENST00000339859 FGD3Q5JSP0 725 aa9.94□□□□□ -0.82
USP54-201ENST00000339859 ZNF276Q8N554 614 aa9.94□□□□□ -0.82
USP54-201ENST00000339859 KCNJ9Q92806 393 aa9.94□□□□□ -0.82
USP54-201ENST00000339859 HSPA12BQ96MM6 686 aa9.94□□□□□ -0.82
USP54-201ENST00000339859 UHRF1Q96T88 793 aaPredicted RBP9.94□□□□□ -0.82
USP54-201ENST00000339859 TRPS1Q9UHF7 1281 aa9.94□□□□□ -0.82
USP54-201ENST00000339859 FAM159BA6NKW6 160 aa9.94□□□□□ -0.82
USP54-201ENST00000339859 FAM189A1O60320 539 aa9.94□□□□□ -0.82
USP54-201ENST00000339859 CRTC1Q6UUV9 634 aa9.94□□□□□ -0.82
USP54-201ENST00000339859 GATAD2AQ86YP4 633 aa9.94□□□□□ -0.82
USP54-201ENST00000339859 EID3Q8N140 333 aa9.94□□□□□ -0.82
USP54-201ENST00000339859 CCDC28BQ9BUN5 200 aa9.94□□□□□ -0.82
USP54-201ENST00000339859 GRHL1Q9NZI5 618 aa9.94□□□□□ -0.82
USP54-201ENST00000339859 CCL26Q9Y258 94 aa9.94□□□□□ -0.82
USP54-201ENST00000339859 HEXBP07686 556 aa9.94□□□□□ -0.82
USP54-201ENST00000339859 PTPN4P29074 926 aa9.94□□□□□ -0.82
USP54-201ENST00000339859 ABATP80404 500 aa9.94□□□□□ -0.82
USP54-201ENST00000339859 NFKB2Q00653 900 aa9.94□□□□□ -0.82
USP54-201ENST00000339859 SLC29A4Q7RTT9 530 aa9.94□□□□□ -0.82
USP54-201ENST00000339859 SCAMP4Q969E2 229 aa9.94□□□□□ -0.82
USP54-201ENST00000339859 DACT3Q96B18 629 aaPredicted RBP9.94□□□□□ -0.82
USP54-201ENST00000339859 GAL3ST4Q96RP7 486 aa9.94□□□□□ -0.82
USP54-201ENST00000339859 KCNH6Q9H252 994 aa9.94□□□□□ -0.82
USP54-201ENST00000339859 TMEM245Q9H330 911 aa9.94□□□□□ -0.82
USP54-201ENST00000339859 KCNK12Q9HB15 430 aa9.94□□□□□ -0.82
USP54-201ENST00000339859 CALML5Q9NZT1 146 aa9.94□□□□□ -0.82
USP54-201ENST00000339859 PLAGL1Q9UM63 463 aa9.94□□□□□ -0.82
USP54-201ENST00000339859 POLR1DQ9Y2S0 133 aa9.94□□□□□ -0.82
USP54-201ENST00000339859 OR6C74A6NCV1 312 aa9.93□□□□□ -0.82
USP54-201ENST00000339859 AP3D1O14617 1153 aa9.93□□□□□ -0.82
USP54-201ENST00000339859 SERPINI2O75830 405 aa9.93□□□□□ -0.82
USP54-201ENST00000339859 PTX3P26022 381 aaPredicted RBP9.93□□□□□ -0.82
USP54-201ENST00000339859 GRIA1P42261 906 aa9.93□□□□□ -0.82
USP54-201ENST00000339859 HERVK_113P63132 956 aa9.93□□□□□ -0.82
USP54-201ENST00000339859 FAM214AQ32MH5 1076 aa9.93□□□□□ -0.82
USP54-201ENST00000339859 SPIN4Q56A73 249 aa9.93□□□□□ -0.82
USP54-201ENST00000339859 MARK4Q96L34 752 aa9.93□□□□□ -0.82
USP54-201ENST00000339859 C17orf62Q9BQA9 187 aa9.93□□□□□ -0.82
USP54-201ENST00000339859 ERVK-6Q9BXR3 956 aa9.93□□□□□ -0.82
USP54-201ENST00000339859 THAP10Q9P2Z0 257 aaPredicted RBP9.93□□□□□ -0.82
USP54-201ENST00000339859 WARS2Q9UGM6 360 aaKnown RBP9.93□□□□□ -0.82
USP54-201ENST00000339859 IRAK3Q9Y616 596 aa9.93□□□□□ -0.82
USP54-201ENST00000339859 CHURC1-FNTBB4DL54 471 aa9.93□□□□□ -0.82
USP54-201ENST00000339859 PDPK1O15530 556 aa9.93□□□□□ -0.82
USP54-201ENST00000339859 HOXC11O43248 304 aaPredicted RBP9.93□□□□□ -0.82
USP54-201ENST00000339859 ARCN1P48444 511 aaKnown RBP9.93□□□□□ -0.82
USP54-201ENST00000339859 RPA4Q13156 261 aa9.93□□□□□ -0.82
USP54-201ENST00000339859 EML3Q32P44 896 aa9.93□□□□□ -0.82
USP54-201ENST00000339859 NAPRTQ6XQN6 538 aa9.93□□□□□ -0.82
USP54-201ENST00000339859 EXOC3L1Q86VI1 746 aa9.93□□□□□ -0.82
USP54-201ENST00000339859 PRSS58Q8IYP2 241 aa9.93□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 28.4 ms