RNA–Protein interactions for RNA: ENST00000297261.6

SHH-201, Transcript of sonic hedgehog, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SHH, Length 4,454 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHH-201ENST00000297261 FAM234BA2RU67 622 aa15.09■□□□□ 0.01
SHH-201ENST00000297261 APLP1P51693 650 aa15.09■□□□□ 0.01
SHH-201ENST00000297261 ERVK-8P63133 956 aa15.09■□□□□ 0.01
SHH-201ENST00000297261 HNRNPDQ14103 355 aaKnown RBP15.09■□□□□ 0.01
SHH-201ENST00000297261 RETSATQ6NUM9 610 aa15.09■□□□□ 0.01
SHH-201ENST00000297261 PAQR3Q6TCH7 311 aa15.09■□□□□ 0.01
SHH-201ENST00000297261 ARFGAP1Q8N6T3 406 aa15.09■□□□□ 0.01
SHH-201ENST00000297261 AP3S1Q92572 193 aa15.09■□□□□ 0.01
SHH-201ENST00000297261 SLC45A3Q96JT2 553 aa15.09■□□□□ 0.01
SHH-201ENST00000297261 SNX7Q9UNH6 387 aa15.09■□□□□ 0.01
SHH-201ENST00000297261 LOXHD1Q8IVV2 1947 aa15.09■□□□□ 0.01
SHH-201ENST00000297261 ATAD5Q96QE3 1844 aa15.08■□□□□ 0.01
SHH-201ENST00000297261 A0A1W2PP18 115 aa15.08■□□□□ 0.01
SHH-201ENST00000297261 DHFRP00374 187 aa15.08■□□□□ 0.01
SHH-201ENST00000297261 HOXD8P13378 290 aaPredicted RBP15.08■□□□□ 0.01
SHH-201ENST00000297261 GTF2E2P29084 291 aaKnown RBP15.08■□□□□ 0.01
SHH-201ENST00000297261 NOS3P29474 1203 aa15.08■□□□□ 0.01
SHH-201ENST00000297261 STX4Q12846 297 aa15.08■□□□□ 0.01
SHH-201ENST00000297261 MTA1Q13330 715 aa15.08■□□□□ 0.01
SHH-201ENST00000297261 FAM151BQ6UXP7 276 aa15.08■□□□□ 0.01
SHH-201ENST00000297261 RAB42Q8N4Z0 105 aa15.08■□□□□ 0.01
SHH-201ENST00000297261 PIK3R3Q92569 461 aa15.08■□□□□ 0.01
SHH-201ENST00000297261 SLC25A51Q9H1U9 297 aa15.08■□□□□ 0.01
SHH-201ENST00000297261 MTPAPQ9NVV4 582 aaKnown RBP eCLIP15.08■□□□□ 0.01
SHH-201ENST00000297261 IQCF5A8MTL0 148 aa15.08■□□□□ 0
SHH-201ENST00000297261 C9IYK1 514 aa15.08■□□□□ 0
SHH-201ENST00000297261 PRMT5O14744 637 aaPredicted RBP15.08■□□□□ 0
SHH-201ENST00000297261 MATN3O15232 486 aa15.08■□□□□ 0
SHH-201ENST00000297261 OXSR1O95747 527 aaPredicted RBP15.08■□□□□ 0
SHH-201ENST00000297261 IL1BP01584 269 aa15.08■□□□□ 0
SHH-201ENST00000297261 OR56A5P0C7T3 313 aa15.08■□□□□ 0
SHH-201ENST00000297261 TNNI3P19429 210 aa15.08■□□□□ 0
SHH-201ENST00000297261 CDH12P55289 794 aa15.08■□□□□ 0
SHH-201ENST00000297261 HTRA3P83110 453 aa15.08■□□□□ 0
SHH-201ENST00000297261 HMGCS1Q01581 520 aa15.08■□□□□ 0
SHH-201ENST00000297261 SULT2A1Q06520 285 aa15.08■□□□□ 0
SHH-201ENST00000297261 SLC15A3Q8IY34 581 aa15.08■□□□□ 0
SHH-201ENST00000297261 LIX1Q8N485 282 aa15.08■□□□□ 0
SHH-201ENST00000297261 KCNN1Q92952 543 aa15.08■□□□□ 0
SHH-201ENST00000297261 NEK6Q9HC98 313 aa15.08■□□□□ 0
SHH-201ENST00000297261 FABP12A6NFH5 140 aa15.08■□□□□ 0
SHH-201ENST00000297261 SMARCB1Q12824 385 aa15.08■□□□□ 0
SHH-201ENST00000297261 ARHGAP15Q53QZ3 475 aa15.08■□□□□ 0
SHH-201ENST00000297261 ALFQ53S48 1182 aa15.08■□□□□ 0
SHH-201ENST00000297261 C6orf141Q5SZD1 244 aa15.08■□□□□ 0
SHH-201ENST00000297261 USP43Q70EL4 1123 aa15.08■□□□□ 0
SHH-201ENST00000297261 OR10T2Q8NGX3 314 aa15.08■□□□□ 0
SHH-201ENST00000297261 TRNT1Q96Q11 434 aaKnown RBP15.08■□□□□ 0
SHH-201ENST00000297261 UCKL1Q9NWZ5 548 aa15.08■□□□□ 0
SHH-201ENST00000297261 GTF2A1LQ9UNN4 478 aa15.08■□□□□ 0
SHH-201ENST00000297261 H3BMQ9 156 aa15.07■□□□□ 0
SHH-201ENST00000297261 SLC7A4O43246 635 aa15.07■□□□□ 0
SHH-201ENST00000297261 GNAO1P09471 354 aa15.07■□□□□ 0
SHH-201ENST00000297261 CLTBP09497 229 aa15.07■□□□□ 0
SHH-201ENST00000297261 HLCSP50747 726 aa15.07■□□□□ 0
SHH-201ENST00000297261 RFTN1Q14699 578 aaPredicted RBP15.07■□□□□ 0
SHH-201ENST00000297261 DOK6Q6PKX4 331 aa15.07■□□□□ 0
SHH-201ENST00000297261 PIWIL3Q7Z3Z3 882 aaKnown RBP15.07■□□□□ 0
SHH-201ENST00000297261 COG8Q96MW5 612 aa15.07■□□□□ 0
SHH-201ENST00000297261 MAPRE3Q9UPY8 281 aa15.07■□□□□ 0
SHH-201ENST00000297261 STX11O75558 287 aa15.07■□□□□ 0
SHH-201ENST00000297261 CD97P48960 835 aa15.07■□□□□ 0
SHH-201ENST00000297261 BCL2L1Q07817 233 aa15.07■□□□□ 0
SHH-201ENST00000297261 SLC10A2Q12908 348 aaPredicted RBP15.07■□□□□ 0
SHH-201ENST00000297261 SCML4Q8N228 414 aa15.07■□□□□ 0
SHH-201ENST00000297261 FBXO22Q8NEZ5 403 aa15.07■□□□□ 0
SHH-201ENST00000297261 KLHL28Q9NXS3 571 aa15.07■□□□□ 0
SHH-201ENST00000297261 TBC1D14Q9P2M4 693 aa15.07■□□□□ 0
SHH-201ENST00000297261 RGPD3A6NKT7 1758 aaPredicted RBP15.07■□□□□ 0
SHH-201ENST00000297261 RGPD4Q7Z3J3 1758 aa15.07■□□□□ 0
SHH-201ENST00000297261 PCSK6P29122 969 aa15.07■□□□□ 0
SHH-201ENST00000297261 SMAD3P84022 425 aaKnown RBP15.07■□□□□ 0
SHH-201ENST00000297261 FOXB2Q5VYV0 432 aa15.07■□□□□ 0
SHH-201ENST00000297261 FAM91A1Q658Y4 838 aa15.07■□□□□ 0
SHH-201ENST00000297261 SMYD5Q6GMV2 418 aa15.07■□□□□ 0
SHH-201ENST00000297261 CYP20A1Q6UW02 462 aa15.07■□□□□ 0
SHH-201ENST00000297261 DEF8Q6ZN54 512 aa15.07■□□□□ 0
SHH-201ENST00000297261 DCDC5Q6ZRR9 648 aa15.07■□□□□ 0
SHH-201ENST00000297261 OTOP2Q7RTS6 562 aa15.07■□□□□ 0
SHH-201ENST00000297261 CIR1Q86X95 450 aaPredicted RBP15.07■□□□□ 0
SHH-201ENST00000297261 TMEM199Q8N511 208 aa15.07■□□□□ 0
SHH-201ENST00000297261 STARD8Q92502 1023 aa15.07■□□□□ 0
SHH-201ENST00000297261 ZUFSPQ96AP4 578 aa15.07■□□□□ 0
SHH-201ENST00000297261 RPL10LQ96L21 214 aaKnown RBP15.07■□□□□ 0
SHH-201ENST00000297261 ZNF778Q96MU6 729 aa15.07■□□□□ 0
SHH-201ENST00000297261 FUNDC2Q9BWH2 189 aa15.07■□□□□ 0
SHH-201ENST00000297261 ANXA11P50995 505 aaKnown RBP15.07■□□□□ 0
SHH-201ENST00000297261 SULT1C3Q6IMI6 304 aa15.07■□□□□ 0
SHH-201ENST00000297261 ZNF517Q6ZMY9 492 aaPredicted RBP15.07■□□□□ 0
SHH-201ENST00000297261 TPGS1Q6ZTW0 290 aa15.07■□□□□ 0
SHH-201ENST00000297261 C3orf58Q8NDZ4 430 aa15.07■□□□□ 0
SHH-201ENST00000297261 ABHD11Q8NFV4 315 aa15.07■□□□□ 0
SHH-201ENST00000297261 VILLO15195 856 aa15.06■□□□□ 0
SHH-201ENST00000297261 ITPKAP23677 461 aa15.06■□□□□ 0
SHH-201ENST00000297261 SLC11A1P49279 550 aa15.06■□□□□ 0
SHH-201ENST00000297261 RPS3AP61247 264 aaKnown RBP15.06■□□□□ 0
SHH-201ENST00000297261 XKR6Q5GH73 641 aa15.06■□□□□ 0
SHH-201ENST00000297261 C11orf24Q96F05 449 aaPredicted RBP15.06■□□□□ 0
SHH-201ENST00000297261 SLC39A8Q9C0K1 460 aa15.06■□□□□ 0
SHH-201ENST00000297261 CLCA2Q9UQC9 943 aa15.06■□□□□ 0
Retrieved 100 of 20,778 RNA–protein pairs in 29.7 ms