RNA–Protein interactions for RNA: ENST00000253024.9

TRIM28-201, Transcript of tripartite motif containing 28, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TRIM28, Length 2,960 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-201ENST00000253024 BPIFB1Q8TDL5 484 aa20.86■□□□□ 0.93
TRIM28-201ENST00000253024 PEX13Q92968 403 aa20.86■□□□□ 0.93
TRIM28-201ENST00000253024 FATE1Q969F0 183 aa20.86■□□□□ 0.93
TRIM28-201ENST00000253024 UBE2FQ969M7 185 aa20.86■□□□□ 0.93
TRIM28-201ENST00000253024 ISG20Q96AZ6 181 aaKnown RBP20.86■□□□□ 0.93
TRIM28-201ENST00000253024 HIPK3Q9H422 1215 aa20.86■□□□□ 0.93
TRIM28-201ENST00000253024 NUDT4Q9NZJ9 180 aa20.86■□□□□ 0.93
TRIM28-201ENST00000253024 MAGEL2Q9UJ55 1249 aa20.86■□□□□ 0.93
TRIM28-201ENST00000253024 FBXO10Q9UK96 956 aa20.86■□□□□ 0.93
TRIM28-201ENST00000253024 EIF3LQ9Y262 564 aaKnown RBP20.86■□□□□ 0.93
TRIM28-201ENST00000253024 CPQQ9Y646 472 aa20.86■□□□□ 0.93
TRIM28-201ENST00000253024 GAPDHSO14556 408 aaPredicted RBP20.86■□□□□ 0.93
TRIM28-201ENST00000253024 PRSS23O95084 383 aa20.86■□□□□ 0.93
TRIM28-201ENST00000253024 RAP2AP10114 183 aa20.86■□□□□ 0.93
TRIM28-201ENST00000253024 GGT1P19440 569 aa20.86■□□□□ 0.93
TRIM28-201ENST00000253024 CCNYL2Q5T2Q4 361 aa20.86■□□□□ 0.93
TRIM28-201ENST00000253024 PACRGLQ8N7B6 248 aa20.86■□□□□ 0.93
TRIM28-201ENST00000253024 SELENOMQ8WWX9 145 aa20.86■□□□□ 0.93
TRIM28-201ENST00000253024 NUP107P57740 925 aa20.85■□□□□ 0.93
TRIM28-201ENST00000253024 IL5RAQ01344 420 aa20.85■□□□□ 0.93
TRIM28-201ENST00000253024 BCL2L1Q07817 233 aa20.85■□□□□ 0.93
TRIM28-201ENST00000253024 FOXM1Q08050 763 aa20.85■□□□□ 0.93
TRIM28-201ENST00000253024 ALG1LQ6GMV1 187 aa20.85■□□□□ 0.93
TRIM28-201ENST00000253024 RIMKLAQ8IXN7 391 aa20.85■□□□□ 0.93
TRIM28-201ENST00000253024 GPR26Q8NDV2 337 aa20.85■□□□□ 0.93
TRIM28-201ENST00000253024 CSF3RQ99062 836 aa20.85■□□□□ 0.93
TRIM28-201ENST00000253024 CLSTN3Q9BQT9 956 aa20.85■□□□□ 0.93
TRIM28-201ENST00000253024 RIBC2Q9H4K1 309 aa20.85■□□□□ 0.93
TRIM28-201ENST00000253024 NPIPB15A6NHN6 443 aaPredicted RBP20.85■□□□□ 0.93
TRIM28-201ENST00000253024 INMTO95050 263 aa20.85■□□□□ 0.93
TRIM28-201ENST00000253024 PDYNP01213 254 aa20.85■□□□□ 0.93
TRIM28-201ENST00000253024 CKMP06732 381 aa20.85■□□□□ 0.93
TRIM28-201ENST00000253024 HMGCLP35914 325 aa20.85■□□□□ 0.93
TRIM28-201ENST00000253024 ALDH3A2P51648 485 aa20.85■□□□□ 0.93
TRIM28-201ENST00000253024 ADNP2Q6IQ32 1131 aa20.85■□□□□ 0.93
TRIM28-201ENST00000253024 CES5AQ6NT32 575 aa20.85■□□□□ 0.93
TRIM28-201ENST00000253024 SERPINA13PQ6UXR4 307 aa20.85■□□□□ 0.93
TRIM28-201ENST00000253024 VRK3Q8IV63 474 aa20.85■□□□□ 0.93
TRIM28-201ENST00000253024 FAM120BQ96EK7 910 aaKnown RBP20.85■□□□□ 0.93
TRIM28-201ENST00000253024 SPATA17Q96L03 361 aa20.85■□□□□ 0.93
TRIM28-201ENST00000253024 RASSF1Q9NS23 344 aa20.85■□□□□ 0.93
TRIM28-201ENST00000253024 VNN3Q9NY84 501 aa20.85■□□□□ 0.93
TRIM28-201ENST00000253024 GLYATL1P3A0A0U1RQE8 302 aa20.85■□□□□ 0.93
TRIM28-201ENST00000253024 ELOVL7A1L3X0 281 aa20.85■□□□□ 0.93
TRIM28-201ENST00000253024 NRG2O14511 850 aaPredicted RBP20.85■□□□□ 0.93
TRIM28-201ENST00000253024 SLC10A3P09131 477 aa20.85■□□□□ 0.93
TRIM28-201ENST00000253024 BCKDHAP12694 445 aa20.85■□□□□ 0.93
TRIM28-201ENST00000253024 GNPDA1P46926 289 aa20.85■□□□□ 0.93
TRIM28-201ENST00000253024 RGS4P49798 205 aa20.85■□□□□ 0.93
TRIM28-201ENST00000253024 PROSER1Q86XN7 944 aa20.85■□□□□ 0.93
TRIM28-201ENST00000253024 ZBTB2Q8N680 514 aa20.85■□□□□ 0.93
TRIM28-201ENST00000253024 RAET1EQ8TD07 263 aa20.85■□□□□ 0.93
TRIM28-201ENST00000253024 PIH1D2Q8WWB5 315 aa20.85■□□□□ 0.93
TRIM28-201ENST00000253024 TANC1Q9C0D5 1861 aa20.84■□□□□ 0.93
TRIM28-201ENST00000253024 CPSF4O95639 269 aaKnown RBP20.84■□□□□ 0.93
TRIM28-201ENST00000253024 KPNA1P52294 538 aaPredicted RBP20.84■□□□□ 0.93
TRIM28-201ENST00000253024 CD47Q08722 323 aa20.84■□□□□ 0.93
TRIM28-201ENST00000253024 SMN1Q16637 294 aaKnown RBP20.84■□□□□ 0.93
TRIM28-201ENST00000253024 FAM26DQ5JW98 314 aa20.84■□□□□ 0.93
TRIM28-201ENST00000253024 OR4F3Q6IEY1 312 aa20.84■□□□□ 0.93
TRIM28-201ENST00000253024 EFL1Q7Z2Z2 1120 aaKnown RBP20.84■□□□□ 0.93
TRIM28-201ENST00000253024 VTCN1Q7Z7D3 282 aa20.84■□□□□ 0.93
TRIM28-201ENST00000253024 HS6ST3Q8IZP7 471 aa20.84■□□□□ 0.93
TRIM28-201ENST00000253024 C8orf59Q8N0T1 100 aaPredicted RBP20.84■□□□□ 0.93
TRIM28-201ENST00000253024 VPS9D1Q9Y2B5 631 aa20.84■□□□□ 0.93
TRIM28-201ENST00000253024 EPB42P16452 691 aa20.84■□□□□ 0.93
TRIM28-201ENST00000253024 ITGALP20701 1170 aa20.84■□□□□ 0.93
TRIM28-201ENST00000253024 EPHA2P29317 976 aa20.84■□□□□ 0.93
TRIM28-201ENST00000253024 TGFBR1P36897 503 aa20.84■□□□□ 0.93
TRIM28-201ENST00000253024 COL9A2Q14055 689 aaPredicted RBP20.84■□□□□ 0.93
TRIM28-201ENST00000253024 PON2Q15165 354 aa20.84■□□□□ 0.93
TRIM28-201ENST00000253024 MTERF1Q99551 399 aaKnown RBP20.84■□□□□ 0.93
TRIM28-201ENST00000253024 ACPTQ9BZG2 426 aa20.84■□□□□ 0.93
TRIM28-201ENST00000253024 FAM118AQ9NWS6 357 aa20.84■□□□□ 0.93
TRIM28-201ENST00000253024 ZNF451Q9Y4E5 1061 aa20.84■□□□□ 0.93
TRIM28-201ENST00000253024 LOC101059915A0A1B0GWI6 518 aaPredicted RBP20.83■□□□□ 0.93
TRIM28-201ENST00000253024 RGS14O43566 566 aa20.83■□□□□ 0.93
TRIM28-201ENST00000253024 PGLSO95336 258 aa20.83■□□□□ 0.93
TRIM28-201ENST00000253024 WEE1P30291 646 aa20.83■□□□□ 0.93
TRIM28-201ENST00000253024 CD70P32970 193 aa20.83■□□□□ 0.93
TRIM28-201ENST00000253024 MAP2K4P45985 399 aa20.83■□□□□ 0.93
TRIM28-201ENST00000253024 RPIAP49247 311 aa20.83■□□□□ 0.93
TRIM28-201ENST00000253024 ITGADQ13349 1161 aa20.83■□□□□ 0.93
TRIM28-201ENST00000253024 ZXDCQ2QGD7 858 aaPredicted RBP20.83■□□□□ 0.93
TRIM28-201ENST00000253024 DOK6Q6PKX4 331 aa20.83■□□□□ 0.93
TRIM28-201ENST00000253024 DNAJB7Q7Z6W7 309 aaPredicted RBP20.83■□□□□ 0.93
TRIM28-201ENST00000253024 SLC15A4Q8N697 577 aa20.83■□□□□ 0.93
TRIM28-201ENST00000253024 ZNF548Q8NEK5 533 aaPredicted RBP20.83■□□□□ 0.93
TRIM28-201ENST00000253024 TBC1D15Q8TC07 691 aa20.83■□□□□ 0.93
TRIM28-201ENST00000253024 RHBDF1Q96CC6 855 aa20.83■□□□□ 0.93
TRIM28-201ENST00000253024 CD244Q9BZW8 370 aa20.83■□□□□ 0.93
TRIM28-201ENST00000253024 ZNF334Q9HCZ1 680 aaPredicted RBP20.83■□□□□ 0.93
TRIM28-201ENST00000253024 HEBP1Q9NRV9 189 aa20.83■□□□□ 0.93
TRIM28-201ENST00000253024 SLC22A14Q9Y267 594 aa20.83■□□□□ 0.93
TRIM28-201ENST00000253024 YIPF1Q9Y548 306 aa20.83■□□□□ 0.93
TRIM28-201ENST00000253024 COL4A4P53420 1690 aaPredicted RBP20.83■□□□□ 0.93
TRIM28-201ENST00000253024 NTRK1P04629 796 aa20.83■□□□□ 0.92
TRIM28-201ENST00000253024 BMXP51813 675 aa20.83■□□□□ 0.92
TRIM28-201ENST00000253024 ATP13A5Q4VNC0 1218 aa20.83■□□□□ 0.92
TRIM28-201ENST00000253024 CACHD1Q5VU97 1274 aa20.83■□□□□ 0.92
Retrieved 100 of 20,778 RNA–protein pairs in 44.7 ms