RNA–Protein interactions for RNA: ENST00000636351.1

CLN3-247, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,292 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-247ENST00000636351 TMEM159Q96B96 161 aa17.39■□□□□ 0.37
CLN3-247ENST00000636351 SH3KBP1Q96B97 665 aa17.39■□□□□ 0.37
CLN3-247ENST00000636351 RMDN2Q96LZ7 410 aa17.39■□□□□ 0.37
CLN3-247ENST00000636351 PANX3Q96QZ0 392 aa17.39■□□□□ 0.37
CLN3-247ENST00000636351 CMKLR1Q99788 373 aa17.39■□□□□ 0.37
CLN3-247ENST00000636351 ARHGAP9Q9BRR9 750 aa17.39■□□□□ 0.37
CLN3-247ENST00000636351 FAM117AQ9C073 453 aa17.39■□□□□ 0.37
CLN3-247ENST00000636351 P2RY12Q9H244 342 aa17.39■□□□□ 0.37
CLN3-247ENST00000636351 SEMA6CQ9H3T2 930 aa17.39■□□□□ 0.37
CLN3-247ENST00000636351 SARS2Q9NP81 518 aaKnown RBP17.39■□□□□ 0.37
CLN3-247ENST00000636351 POT1Q9NUX5 634 aa17.39■□□□□ 0.37
CLN3-247ENST00000636351 KCNK4Q9NYG8 393 aa17.39■□□□□ 0.37
CLN3-247ENST00000636351 FBXO5Q9UKT4 447 aa17.39■□□□□ 0.37
CLN3-247ENST00000636351 HEMK1Q9Y5R4 338 aaPredicted RBP17.39■□□□□ 0.37
CLN3-247ENST00000636351 CFAP20Q9Y6A4 193 aaKnown RBP17.39■□□□□ 0.37
CLN3-247ENST00000636351 E5RI56 91 aa17.38■□□□□ 0.37
CLN3-247ENST00000636351 H3BMM5 538 aa17.38■□□□□ 0.37
CLN3-247ENST00000636351 LIN7AO14910 233 aaPredicted RBP17.38■□□□□ 0.37
CLN3-247ENST00000636351 PPM1DO15297 605 aa17.38■□□□□ 0.37
CLN3-247ENST00000636351 ESR1P03372 595 aa17.38■□□□□ 0.37
CLN3-247ENST00000636351 RHOXF2BP0C7M4 288 aa17.38■□□□□ 0.37
CLN3-247ENST00000636351 SLC19A1P41440 591 aa17.38■□□□□ 0.37
CLN3-247ENST00000636351 MAPK9P45984 424 aa17.38■□□□□ 0.37
CLN3-247ENST00000636351 CARSP49589 748 aaKnown RBP17.38■□□□□ 0.37
CLN3-247ENST00000636351 OR1D5P58170 312 aa17.38■□□□□ 0.37
CLN3-247ENST00000636351 UBE2IP63279 158 aaKnown RBP17.38■□□□□ 0.37
CLN3-247ENST00000636351 RPE65Q16518 533 aa17.38■□□□□ 0.37
CLN3-247ENST00000636351 CTSL3PQ5NE16 218 aa17.38■□□□□ 0.37
CLN3-247ENST00000636351 DUS1LQ6P1R4 473 aaKnown RBP17.38■□□□□ 0.37
CLN3-247ENST00000636351 TRMT10BQ6PF06 316 aaKnown RBP17.38■□□□□ 0.37
CLN3-247ENST00000636351 LRRN4CLQ8ND94 238 aa17.38■□□□□ 0.37
CLN3-247ENST00000636351 SEC14L1Q92503 715 aa17.38■□□□□ 0.37
CLN3-247ENST00000636351 FAM136AQ96C01 138 aa17.38■□□□□ 0.37
CLN3-247ENST00000636351 AHCYL2Q96HN2 611 aaKnown RBP17.38■□□□□ 0.37
CLN3-247ENST00000636351 RHOXF2Q9BQY4 288 aa17.38■□□□□ 0.37
CLN3-247ENST00000636351 FAM129AQ9BZQ8 928 aa17.38■□□□□ 0.37
CLN3-247ENST00000636351 PHACTR1Q9C0D0 580 aa17.38■□□□□ 0.37
CLN3-247ENST00000636351 L2HGDHQ9H9P8 463 aa17.38■□□□□ 0.37
CLN3-247ENST00000636351 RDH14Q9HBH5 336 aa17.38■□□□□ 0.37
CLN3-247ENST00000636351 PLAC1Q9HBJ0 212 aa17.38■□□□□ 0.37
CLN3-247ENST00000636351 ZNF624Q9P2J8 865 aaPredicted RBP17.38■□□□□ 0.37
CLN3-247ENST00000636351 PCDHGA4Q9Y5G9 962 aa17.38■□□□□ 0.37
CLN3-247ENST00000636351 C9orf172C9J069 976 aa17.37■□□□□ 0.37
CLN3-247ENST00000636351 B4GAT1O43505 415 aa17.37■□□□□ 0.37
CLN3-247ENST00000636351 S1PR4O95977 384 aa17.37■□□□□ 0.37
CLN3-247ENST00000636351 ITGB2P05107 769 aa17.37■□□□□ 0.37
CLN3-247ENST00000636351 APOA4P06727 396 aa17.37■□□□□ 0.37
CLN3-247ENST00000636351 MTHFD1P11586 935 aaKnown RBP17.37■□□□□ 0.37
CLN3-247ENST00000636351 GPR3P46089 330 aa17.37■□□□□ 0.37
CLN3-247ENST00000636351 RPA4Q13156 261 aa17.37■□□□□ 0.37
CLN3-247ENST00000636351 C16orf72Q14CZ0 275 aa17.37■□□□□ 0.37
CLN3-247ENST00000636351 ZNF789Q5FWF6 425 aa17.37■□□□□ 0.37
CLN3-247ENST00000636351 TEX35Q5T0J7 233 aa17.37■□□□□ 0.37
CLN3-247ENST00000636351 CHCHD2P9Q5T1J5 151 aaPredicted RBP17.37■□□□□ 0.37
CLN3-247ENST00000636351 ZNF438Q7Z4V0 828 aa17.37■□□□□ 0.37
CLN3-247ENST00000636351 SPDYE1Q8NFV5 336 aaPredicted RBP17.37■□□□□ 0.37
CLN3-247ENST00000636351 C9orf72Q96LT7 481 aa17.37■□□□□ 0.37
CLN3-247ENST00000636351 LDHAL6BQ9BYZ2 381 aaPredicted RBP17.37■□□□□ 0.37
CLN3-247ENST00000636351 TRIM4Q9C037 500 aa17.37■□□□□ 0.37
CLN3-247ENST00000636351 ZDHHC18Q9NUE0 388 aa17.37■□□□□ 0.37
CLN3-247ENST00000636351 ZFATQ9P243 1243 aa17.37■□□□□ 0.37
CLN3-247ENST00000636351 SLC17A6Q9P2U8 582 aa17.37■□□□□ 0.37
CLN3-247ENST00000636351 PCDHB11Q9Y5F2 797 aa17.37■□□□□ 0.37
CLN3-247ENST00000636351 AHCTF1Q8WYP5 2266 aa17.37■□□□□ 0.37
CLN3-247ENST00000636351 NIPSNAP2O75323 286 aa17.36■□□□□ 0.37
CLN3-247ENST00000636351 CPNE6O95741 557 aa17.36■□□□□ 0.37
CLN3-247ENST00000636351 FAM87AP0C7U9 286 aa17.36■□□□□ 0.37
CLN3-247ENST00000636351 PKMP14618 531 aaKnown RBP17.36■□□□□ 0.37
CLN3-247ENST00000636351 XRCC1P18887 633 aaPredicted RBP17.36■□□□□ 0.37
CLN3-247ENST00000636351 WT1P19544 449 aaPredicted RBP17.36■□□□□ 0.37
CLN3-247ENST00000636351 CHRM3P20309 590 aa17.36■□□□□ 0.37
CLN3-247ENST00000636351 PDHA2P29803 388 aa17.36■□□□□ 0.37
CLN3-247ENST00000636351 CCR7P32248 378 aa17.36■□□□□ 0.37
CLN3-247ENST00000636351 MAGEA4P43358 317 aa17.36■□□□□ 0.37
CLN3-247ENST00000636351 ADARP55265 1226 aaKnown RBP17.36■□□□□ 0.37
CLN3-247ENST00000636351 NFKB2Q00653 900 aa17.36■□□□□ 0.37
CLN3-247ENST00000636351 PLOD1Q02809 727 aaPredicted RBP17.36■□□□□ 0.37
CLN3-247ENST00000636351 MGAT5Q09328 741 aa17.36■□□□□ 0.37
CLN3-247ENST00000636351 HSPA14Q0VDF9 509 aa17.36■□□□□ 0.37
CLN3-247ENST00000636351 NR1D2Q14995 579 aa17.36■□□□□ 0.37
CLN3-247ENST00000636351 PLCL1Q15111 1095 aa17.36■□□□□ 0.37
CLN3-247ENST00000636351 ZNF658BQ4V348 819 aaPredicted RBP17.36■□□□□ 0.37
CLN3-247ENST00000636351 XKR5Q6UX68 686 aa17.36■□□□□ 0.37
CLN3-247ENST00000636351 CEP128Q6ZU80 1094 aa17.36■□□□□ 0.37
CLN3-247ENST00000636351 OTOAQ7RTW8 1153 aa17.36■□□□□ 0.37
CLN3-247ENST00000636351 PIM3Q86V86 326 aa17.36■□□□□ 0.37
CLN3-247ENST00000636351 C2CD4AQ8NCU7 369 aaPredicted RBP17.36■□□□□ 0.37
CLN3-247ENST00000636351 OR10G6Q8NH81 332 aa17.36■□□□□ 0.37
CLN3-247ENST00000636351 SKA2Q8WVK7 121 aaPredicted RBP17.36■□□□□ 0.37
CLN3-247ENST00000636351 BIRC8Q96P09 236 aa17.36■□□□□ 0.37
CLN3-247ENST00000636351 FMO2Q99518 471 aa17.36■□□□□ 0.37
CLN3-247ENST00000636351 OR52A5Q9H2C5 316 aa17.36■□□□□ 0.37
CLN3-247ENST00000636351 HEBP2Q9Y5Z4 205 aa17.36■□□□□ 0.37
CLN3-247ENST00000636351 HECTD1Q9ULT8 2610 aa17.35■□□□□ 0.37
CLN3-247ENST00000636351 LILRA5A6NI73 299 aa17.35■□□□□ 0.37
CLN3-247ENST00000636351 CYSRT1A8MQ03 144 aa17.35■□□□□ 0.37
CLN3-247ENST00000636351 DUX1O43812 170 aa17.35■□□□□ 0.37
CLN3-247ENST00000636351 CCL4P13236 92 aa17.35■□□□□ 0.37
CLN3-247ENST00000636351 CD82P27701 267 aa17.35■□□□□ 0.37
CLN3-247ENST00000636351 AOAHP28039 575 aa17.35■□□□□ 0.37
Retrieved 100 of 20,778 RNA–protein pairs in 32.7 ms