RNA–Protein interactions for RNA: ENST00000635578.1

SMARCB1-209, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1, humanhuman

TSL 1 (best)

Gene SMARCB1, Length 242 nt, Biotype protein coding, Subcellular localisation Cytosol, Exosome, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCB1-209ENST00000635578 TRAF4Q9BUZ4 470 aaPredicted RBP1.06□□□□□ -2.24
SMARCB1-209ENST00000635578 RBM4Q9BWF3 364 aaKnown RBP1.06□□□□□ -2.24
SMARCB1-209ENST00000635578 MAK16Q9BXY0 300 aaKnown RBP1.06□□□□□ -2.24
SMARCB1-209ENST00000635578 SEMA6AQ9H2E6 1030 aa1.06□□□□□ -2.24
SMARCB1-209ENST00000635578 PLK3Q9H4B4 646 aa1.06□□□□□ -2.24
SMARCB1-209ENST00000635578 RAD21L1Q9H4I0 556 aa1.06□□□□□ -2.24
SMARCB1-209ENST00000635578 BICC1Q9H694 974 aaKnown RBP1.06□□□□□ -2.24
SMARCB1-209ENST00000635578 ESRP2Q9H6T0 727 aaKnown RBP1.06□□□□□ -2.24
SMARCB1-209ENST00000635578 DNAJC18Q9H819 358 aa1.06□□□□□ -2.24
SMARCB1-209ENST00000635578 BRF2Q9HAW0 419 aa1.06□□□□□ -2.24
SMARCB1-209ENST00000635578 ZNF334Q9HCZ1 680 aaPredicted RBP1.06□□□□□ -2.24
SMARCB1-209ENST00000635578 MMP25Q9NPA2 562 aa1.06□□□□□ -2.24
SMARCB1-209ENST00000635578 ECHDC1Q9NTX5 307 aa1.06□□□□□ -2.24
SMARCB1-209ENST00000635578 ZFP57Q9NU63 452 aa1.06□□□□□ -2.24
SMARCB1-209ENST00000635578 TCP11L1Q9NUJ3 509 aa1.06□□□□□ -2.24
SMARCB1-209ENST00000635578 SEPT11Q9NVA2 429 aaKnown RBP1.06□□□□□ -2.24
SMARCB1-209ENST00000635578 SLC38A7Q9NVC3 462 aa1.06□□□□□ -2.24
SMARCB1-209ENST00000635578 MCM9Q9NXL9 1143 aa1.06□□□□□ -2.24
SMARCB1-209ENST00000635578 C1RLQ9NZP8 487 aa1.06□□□□□ -2.24
SMARCB1-209ENST00000635578 DBNLQ9UJU6 430 aaKnown RBP1.06□□□□□ -2.24
SMARCB1-209ENST00000635578 GJD2Q9UKL4 321 aa1.06□□□□□ -2.24
SMARCB1-209ENST00000635578 ZNF215Q9UL58 517 aaPredicted RBP1.06□□□□□ -2.24
SMARCB1-209ENST00000635578 B3GALT5Q9Y2C3 310 aa1.06□□□□□ -2.24
SMARCB1-209ENST00000635578 TMEM98Q9Y2Y6 226 aa1.06□□□□□ -2.24
SMARCB1-209ENST00000635578 ZNF711Q9Y462 761 aa1.06□□□□□ -2.24
SMARCB1-209ENST00000635578 CLIC4Q9Y696 253 aa1.06□□□□□ -2.24
SMARCB1-209ENST00000635578 SESN1Q9Y6P5 492 aa1.06□□□□□ -2.24
SMARCB1-209ENST00000635578 PIAS3Q9Y6X2 628 aa1.06□□□□□ -2.24
SMARCB1-209ENST00000635578 MYH15Q9Y2K3 1946 aa1.06□□□□□ -2.24
SMARCB1-209ENST00000635578 CGNL1Q0VF96 1302 aa1.06□□□□□ -2.24
SMARCB1-209ENST00000635578 DHX57Q6P158 1386 aaKnown RBP1.06□□□□□ -2.24
SMARCB1-209ENST00000635578 KIAA1549LQ6ZVL6 1849 aa1.05□□□□□ -2.24
SMARCB1-209ENST00000635578 RALGAPA2Q2PPJ7 1873 aa1.05□□□□□ -2.24
SMARCB1-209ENST00000635578 PLXNA4Q9HCM2 1894 aa1.05□□□□□ -2.24
SMARCB1-209ENST00000635578 ZNF318Q5VUA4 2279 aa1.05□□□□□ -2.24
SMARCB1-209ENST00000635578 C2orf16Q68DN1 1984 aa1.05□□□□□ -2.24
SMARCB1-209ENST00000635578 MICAL3Q7RTP6 2002 aa1.05□□□□□ -2.24
SMARCB1-209ENST00000635578 COL4A6Q14031 1691 aa1.05□□□□□ -2.24
SMARCB1-209ENST00000635578 IGLV5-45A0A087WSX0 123 aa1.05□□□□□ -2.24
SMARCB1-209ENST00000635578 A0A1W2PRG0 241 aa1.05□□□□□ -2.24
SMARCB1-209ENST00000635578 A0A1W2PS18 150 aa1.05□□□□□ -2.24
SMARCB1-209ENST00000635578 CPED1A4D0V7 1026 aa1.05□□□□□ -2.24
SMARCB1-209ENST00000635578 PI4KAP2A4QPH2 592 aa1.05□□□□□ -2.24
SMARCB1-209ENST00000635578 OR5K3A6NET4 321 aa1.05□□□□□ -2.24
SMARCB1-209ENST00000635578 LILRA5A6NI73 299 aa1.05□□□□□ -2.24
SMARCB1-209ENST00000635578 LRRC72A6NJI9 287 aa1.05□□□□□ -2.24
SMARCB1-209ENST00000635578 DUXAA6NLW8 204 aa1.05□□□□□ -2.24
SMARCB1-209ENST00000635578 C15orf62A8K5M9 175 aa1.05□□□□□ -2.24
SMARCB1-209ENST00000635578 B4DLN1 442 aa1.05□□□□□ -2.24
SMARCB1-209ENST00000635578 ZNF587BE7ETH6 402 aa1.05□□□□□ -2.24
SMARCB1-209ENST00000635578 TMEM189-UBE2V1I3L0A0 370 aa1.05□□□□□ -2.24
SMARCB1-209ENST00000635578 J3QR06 171 aa1.05□□□□□ -2.24
SMARCB1-209ENST00000635578 PLK4O00444 970 aa1.05□□□□□ -2.24
SMARCB1-209ENST00000635578 PLOD2O00469 737 aa1.05□□□□□ -2.24
SMARCB1-209ENST00000635578 EIF3DO15371 548 aaKnown RBP eCLIP1.05□□□□□ -2.24
SMARCB1-209ENST00000635578 OGG1O15527 345 aa1.05□□□□□ -2.24
SMARCB1-209ENST00000635578 KCNN4O15554 427 aa1.05□□□□□ -2.24
SMARCB1-209ENST00000635578 TGFB1I1O43294 461 aa1.05□□□□□ -2.24
SMARCB1-209ENST00000635578 PLPP2O43688 288 aa1.05□□□□□ -2.24
SMARCB1-209ENST00000635578 BUD23O43709 281 aaKnown RBP1.05□□□□□ -2.24
SMARCB1-209ENST00000635578 SYNCRIPO60506 623 aaKnown RBP1.05□□□□□ -2.24
SMARCB1-209ENST00000635578 ZBED4O75132 1171 aa1.05□□□□□ -2.24
SMARCB1-209ENST00000635578 TPPPO94811 219 aa1.05□□□□□ -2.24
SMARCB1-209ENST00000635578 ZWINTO95229 277 aa1.05□□□□□ -2.24
SMARCB1-209ENST00000635578 FTCDO95954 541 aa1.05□□□□□ -2.24
SMARCB1-209ENST00000635578 ICAM1P05362 532 aa1.05□□□□□ -2.24
SMARCB1-209ENST00000635578 CLEC3BP05452 202 aa1.05□□□□□ -2.24
SMARCB1-209ENST00000635578 TFAP2AP05549 437 aa1.05□□□□□ -2.24
SMARCB1-209ENST00000635578 RB1P06400 928 aa1.05□□□□□ -2.24
SMARCB1-209ENST00000635578 LIPFP07098 398 aa1.05□□□□□ -2.24
SMARCB1-209ENST00000635578 SRPRAP08240 638 aaKnown RBP1.05□□□□□ -2.24
SMARCB1-209ENST00000635578 FAM106CPP0CH98 169 aa1.05□□□□□ -2.24
SMARCB1-209ENST00000635578 TSPY4P0CV99 314 aa1.05□□□□□ -2.24
SMARCB1-209ENST00000635578 TSPY10P0CW01 314 aa1.05□□□□□ -2.24
SMARCB1-209ENST00000635578 ACADMP11310 421 aa1.05□□□□□ -2.24
SMARCB1-209ENST00000635578 HLA-DOBP13765 273 aa1.05□□□□□ -2.24
SMARCB1-209ENST00000635578 GJA1P17302 382 aa1.05□□□□□ -2.24
SMARCB1-209ENST00000635578 CKMT2P17540 419 aa1.05□□□□□ -2.24
SMARCB1-209ENST00000635578 GNAZP19086 355 aa1.05□□□□□ -2.24
SMARCB1-209ENST00000635578 CD53P19397 219 aa1.05□□□□□ -2.24
SMARCB1-209ENST00000635578 GCH1P30793 250 aa1.05□□□□□ -2.24
SMARCB1-209ENST00000635578 HOXC9P31274 260 aa1.05□□□□□ -2.24
SMARCB1-209ENST00000635578 TIMP3P35625 211 aa1.05□□□□□ -2.24
SMARCB1-209ENST00000635578 HOXA1P49639 335 aaPredicted RBP1.05□□□□□ -2.24
SMARCB1-209ENST00000635578 CAMPP49913 170 aa1.05□□□□□ -2.24
SMARCB1-209ENST00000635578 MRPL12P52815 198 aaKnown RBP1.05□□□□□ -2.24
SMARCB1-209ENST00000635578 MLLT10P55197 1068 aa1.05□□□□□ -2.24
SMARCB1-209ENST00000635578 NAP1L1P55209 391 aaKnown RBP1.05□□□□□ -2.24
SMARCB1-209ENST00000635578 CDH8P55286 799 aa1.05□□□□□ -2.24
SMARCB1-209ENST00000635578 CDH11P55287 796 aa1.05□□□□□ -2.24
SMARCB1-209ENST00000635578 CLDN20P56880 219 aa1.05□□□□□ -2.24
SMARCB1-209ENST00000635578 RPS18P62269 152 aaKnown RBP1.05□□□□□ -2.24
SMARCB1-209ENST00000635578 SNRPEP62304 92 aaKnown RBP1.05□□□□□ -2.24
SMARCB1-209ENST00000635578 PITX1P78337 314 aaPredicted RBP1.05□□□□□ -2.24
SMARCB1-209ENST00000635578 KCNJ10P78508 379 aa1.05□□□□□ -2.24
SMARCB1-209ENST00000635578 TMF1P82094 1093 aa1.05□□□□□ -2.24
SMARCB1-209ENST00000635578 MRPS34P82930 218 aaKnown RBP1.05□□□□□ -2.24
SMARCB1-209ENST00000635578 ZBED6P86452 979 aa1.05□□□□□ -2.24
SMARCB1-209ENST00000635578 MPP1Q00013 466 aa1.05□□□□□ -2.24
SMARCB1-209ENST00000635578 NIPAL4Q0D2K0 466 aa1.05□□□□□ -2.24
Retrieved 100 of 20,778 RNA–protein pairs in 32.5 ms