RNA–Protein interactions for RNA: ENST00000611481.1

LINC00540-201, long intergenic non-protein coding RNA 540, humanhuman

TSL 4

Gene LINC00540, Length 588 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00540-201ENST00000611481 STT3BQ8TCJ2 826 aa4.37□□□□□ -1.71
LINC00540-201ENST00000611481 SORCS1Q8WY21 1168 aa4.37□□□□□ -1.71
LINC00540-201ENST00000611481 CENPTQ96BT3 561 aa4.37□□□□□ -1.71
LINC00540-201ENST00000611481 EID2BQ96D98 161 aa4.37□□□□□ -1.71
LINC00540-201ENST00000611481 C18orf8Q96DM3 657 aa4.37□□□□□ -1.71
LINC00540-201ENST00000611481 IQCDQ96DY2 449 aa4.37□□□□□ -1.71
LINC00540-201ENST00000611481 SLC45A3Q96JT2 553 aa4.37□□□□□ -1.71
LINC00540-201ENST00000611481 SENP8Q96LD8 212 aa4.37□□□□□ -1.71
LINC00540-201ENST00000611481 CCDC3Q9BQI4 270 aa4.37□□□□□ -1.71
LINC00540-201ENST00000611481 INTS2Q9H0H0 1204 aaKnown RBP4.37□□□□□ -1.71
LINC00540-201ENST00000611481 C2orf40Q9H1Z8 148 aa4.37□□□□□ -1.71
LINC00540-201ENST00000611481 CDT1Q9H211 546 aa4.37□□□□□ -1.71
LINC00540-201ENST00000611481 GPN2Q9H9Y4 310 aaPredicted RBP4.37□□□□□ -1.71
LINC00540-201ENST00000611481 TMEM8AQ9HCN3 771 aa4.37□□□□□ -1.71
LINC00540-201ENST00000611481 C6orf50Q9HD87 102 aa4.37□□□□□ -1.71
LINC00540-201ENST00000611481 SLAMF7Q9NQ25 335 aa4.37□□□□□ -1.71
LINC00540-201ENST00000611481 ST6GALNAC1Q9NSC7 600 aaPredicted RBP4.37□□□□□ -1.71
LINC00540-201ENST00000611481 PNPOQ9NVS9 261 aa4.37□□□□□ -1.71
LINC00540-201ENST00000611481 RLIMQ9NVW2 624 aa4.37□□□□□ -1.71
LINC00540-201ENST00000611481 TRNAU1APQ9NX07 287 aaKnown RBP4.37□□□□□ -1.71
LINC00540-201ENST00000611481 PLK2Q9NYY3 685 aa4.37□□□□□ -1.71
LINC00540-201ENST00000611481 CPNE7Q9UBL6 633 aa4.37□□□□□ -1.71
LINC00540-201ENST00000611481 SNX14Q9Y5W7 946 aa4.37□□□□□ -1.71
LINC00540-201ENST00000611481 PKD1L1Q8TDX9 2849 aa4.36□□□□□ -1.71
LINC00540-201ENST00000611481 PRRC2CQ9Y520 2896 aaKnown RBP4.36□□□□□ -1.71
LINC00540-201ENST00000611481 ZNF840PA6NDX5 716 aa4.36□□□□□ -1.71
LINC00540-201ENST00000611481 ZNF785A8K8V0 405 aa4.36□□□□□ -1.71
LINC00540-201ENST00000611481 D6RAR5 112 aa4.36□□□□□ -1.71
LINC00540-201ENST00000611481 E5RJQ4 531 aa4.36□□□□□ -1.71
LINC00540-201ENST00000611481 TMX2-CTNND1H3BSU7 103 aa4.36□□□□□ -1.71
LINC00540-201ENST00000611481 PPM1DO15297 605 aa4.36□□□□□ -1.71
LINC00540-201ENST00000611481 THAP12O43422 761 aa4.36□□□□□ -1.71
LINC00540-201ENST00000611481 EDIL3O43854 480 aa4.36□□□□□ -1.71
LINC00540-201ENST00000611481 AHCYL1O43865 530 aa4.36□□□□□ -1.71
LINC00540-201ENST00000611481 PPP6R2O75170 966 aa4.36□□□□□ -1.71
LINC00540-201ENST00000611481 TMEM63AO94886 807 aa4.36□□□□□ -1.71
LINC00540-201ENST00000611481 BAG2O95816 211 aa4.36□□□□□ -1.71
LINC00540-201ENST00000611481 OLFM2O95897 454 aa4.36□□□□□ -1.71
LINC00540-201ENST00000611481 OAS1P00973 400 aaKnown RBP4.36□□□□□ -1.71
LINC00540-201ENST00000611481 ANXA2P07355 339 aaKnown RBP4.36□□□□□ -1.71
LINC00540-201ENST00000611481 HTR1EP28566 365 aa4.36□□□□□ -1.71
LINC00540-201ENST00000611481 LRPAP1P30533 357 aa4.36□□□□□ -1.71
LINC00540-201ENST00000611481 CCR5P51681 352 aa4.36□□□□□ -1.71
LINC00540-201ENST00000611481 CASP6P55212 293 aa4.36□□□□□ -1.71
LINC00540-201ENST00000611481 LILRA4P59901 499 aa4.36□□□□□ -1.71
LINC00540-201ENST00000611481 PSMC1P62191 440 aaKnown RBP4.36□□□□□ -1.71
LINC00540-201ENST00000611481 ZBTB16Q05516 673 aa4.36□□□□□ -1.71
LINC00540-201ENST00000611481 CDK18Q07002 472 aa4.36□□□□□ -1.71
LINC00540-201ENST00000611481 HABP2Q14520 560 aaPredicted RBP4.36□□□□□ -1.71
LINC00540-201ENST00000611481 Q4G0T1 1027 aa4.36□□□□□ -1.71
LINC00540-201ENST00000611481 ZNF542PQ5EBM4 170 aa4.36□□□□□ -1.71
LINC00540-201ENST00000611481 VWA2Q5GFL6 755 aa4.36□□□□□ -1.71
LINC00540-201ENST00000611481 HAUS3Q68CZ6 603 aa4.36□□□□□ -1.71
LINC00540-201ENST00000611481 HIST2H2BDQ6DRA6 164 aa4.36□□□□□ -1.71
LINC00540-201ENST00000611481 KIAA1161Q6NSJ0 714 aa4.36□□□□□ -1.71
LINC00540-201ENST00000611481 FBXO38Q6PIJ6 1188 aa4.36□□□□□ -1.71
LINC00540-201ENST00000611481 NAPRTQ6XQN6 538 aa4.36□□□□□ -1.71
LINC00540-201ENST00000611481 TMTC3Q6ZXV5 915 aa4.36□□□□□ -1.71
LINC00540-201ENST00000611481 DTX2Q86UW9 622 aa4.36□□□□□ -1.71
LINC00540-201ENST00000611481 IQCHQ86VS3 1027 aa4.36□□□□□ -1.71
LINC00540-201ENST00000611481 METTL23Q86XA0 190 aa4.36□□□□□ -1.71
LINC00540-201ENST00000611481 ZNF713Q8N859 430 aaPredicted RBP4.36□□□□□ -1.71
LINC00540-201ENST00000611481 OR2T34Q8NGX1 318 aa4.36□□□□□ -1.71
LINC00540-201ENST00000611481 WBP2Q969T9 261 aa4.36□□□□□ -1.71
LINC00540-201ENST00000611481 NMD3Q96D46 503 aaKnown RBP4.36□□□□□ -1.71
LINC00540-201ENST00000611481 ARSGQ96EG1 525 aa4.36□□□□□ -1.71
LINC00540-201ENST00000611481 CCDC43Q96MW1 224 aaKnown RBP4.36□□□□□ -1.71
LINC00540-201ENST00000611481 RANBP9Q96S59 729 aa4.36□□□□□ -1.71
LINC00540-201ENST00000611481 TCHPQ9BT92 498 aa4.36□□□□□ -1.71
LINC00540-201ENST00000611481 KIFC3Q9BVG8 833 aa4.36□□□□□ -1.71
LINC00540-201ENST00000611481 CIPCQ9C0C6 399 aa4.36□□□□□ -1.71
LINC00540-201ENST00000611481 SIK2Q9H0K1 926 aa4.36□□□□□ -1.71
LINC00540-201ENST00000611481 GHITMQ9H3K2 345 aa4.36□□□□□ -1.71
LINC00540-201ENST00000611481 SARS2Q9NP81 518 aaKnown RBP4.36□□□□□ -1.71
LINC00540-201ENST00000611481 NECTIN3Q9NQS3 549 aa4.36□□□□□ -1.71
LINC00540-201ENST00000611481 MRGBPQ9NV56 204 aa4.36□□□□□ -1.71
LINC00540-201ENST00000611481 PIH1D1Q9NWS0 290 aaKnown RBP4.36□□□□□ -1.71
LINC00540-201ENST00000611481 FBXL12Q9NXK8 326 aa4.36□□□□□ -1.71
LINC00540-201ENST00000611481 SIDT1Q9NXL6 827 aaKnown RBP4.36□□□□□ -1.71
LINC00540-201ENST00000611481 BARHL2Q9NY43 387 aa4.36□□□□□ -1.71
LINC00540-201ENST00000611481 RGL1Q9NZL6 768 aa4.36□□□□□ -1.71
LINC00540-201ENST00000611481 NCKIPSDQ9NZQ3 722 aa4.36□□□□□ -1.71
LINC00540-201ENST00000611481 WDR35Q9P2L0 1181 aa4.36□□□□□ -1.71
LINC00540-201ENST00000611481 SH2B3Q9UQQ2 575 aa4.36□□□□□ -1.71
LINC00540-201ENST00000611481 CA5BQ9Y2D0 317 aa4.36□□□□□ -1.71
LINC00540-201ENST00000611481 SNX5Q9Y5X3 404 aa4.36□□□□□ -1.71
LINC00540-201ENST00000611481 CITO14578 2027 aa4.36□□□□□ -1.71
LINC00540-201ENST00000611481 GTPBP10A4D1E9 387 aaKnown RBP4.35□□□□□ -1.71
LINC00540-201ENST00000611481 H7C0S8 307 aa4.35□□□□□ -1.71
LINC00540-201ENST00000611481 NTN3O00634 580 aaPredicted RBP4.35□□□□□ -1.71
LINC00540-201ENST00000611481 SLC16A3O15427 465 aaKnown RBP4.35□□□□□ -1.71
LINC00540-201ENST00000611481 DOK2O60496 412 aa4.35□□□□□ -1.71
LINC00540-201ENST00000611481 ATP2C2O75185 946 aa4.35□□□□□ -1.71
LINC00540-201ENST00000611481 RTN3O95197 1032 aaPredicted RBP4.35□□□□□ -1.71
LINC00540-201ENST00000611481 TDP2O95551 362 aa4.35□□□□□ -1.71
LINC00540-201ENST00000611481 PDHA1P08559 390 aa4.35□□□□□ -1.71
LINC00540-201ENST00000611481 ITGA5P08648 1049 aa4.35□□□□□ -1.71
LINC00540-201ENST00000611481 TCN2P20062 427 aa4.35□□□□□ -1.71
LINC00540-201ENST00000611481 MX1P20591 662 aa4.35□□□□□ -1.71
LINC00540-201ENST00000611481 CHMP24386 653 aa4.35□□□□□ -1.71
Retrieved 100 of 20,778 RNA–protein pairs in 44.6 ms