RNA–Protein interactions for RNA: ENST00000599342.5

VRK3-216, Transcript of vaccinia related kinase 3, humanhuman

TSL 3

Gene VRK3, Length 795 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-216ENST00000599342 IGFBP7Q16270 282 aa9.5□□□□□ -0.89
VRK3-216ENST00000599342 ZNF658BQ4V348 819 aaPredicted RBP9.5□□□□□ -0.89
VRK3-216ENST00000599342 CCDC38Q502W7 563 aa9.5□□□□□ -0.89
VRK3-216ENST00000599342 COLEC12Q5KU26 742 aa9.5□□□□□ -0.89
VRK3-216ENST00000599342 PRAMEF17Q5VTA0 474 aa9.5□□□□□ -0.89
VRK3-216ENST00000599342 LYPLAL1Q5VWZ2 237 aa9.5□□□□□ -0.89
VRK3-216ENST00000599342 AFTPHQ6ULP2 937 aa9.5□□□□□ -0.89
VRK3-216ENST00000599342 SPESP1Q6UW49 350 aa9.5□□□□□ -0.89
VRK3-216ENST00000599342 PACS1Q6VY07 963 aa9.5□□□□□ -0.89
VRK3-216ENST00000599342 ZNF517Q6ZMY9 492 aaPredicted RBP9.5□□□□□ -0.89
VRK3-216ENST00000599342 MICALCLQ6ZW33 695 aa9.5□□□□□ -0.89
VRK3-216ENST00000599342 TMEM139Q8IV31 216 aa9.5□□□□□ -0.89
VRK3-216ENST00000599342 PIANPQ8IYJ0 282 aa9.5□□□□□ -0.89
VRK3-216ENST00000599342 SYTL1Q8IYJ3 562 aa9.5□□□□□ -0.89
VRK3-216ENST00000599342 GPR135Q8IZ08 494 aa9.5□□□□□ -0.89
VRK3-216ENST00000599342 DSELQ8IZU8 1212 aa9.5□□□□□ -0.89
VRK3-216ENST00000599342 ENDOVQ8N8Q3 282 aaKnown RBP9.5□□□□□ -0.89
VRK3-216ENST00000599342 SLC38A9Q8NBW4 561 aa9.5□□□□□ -0.89
VRK3-216ENST00000599342 OR52K1Q8NGK4 314 aa9.5□□□□□ -0.89
VRK3-216ENST00000599342 OR1L3Q8NH93 324 aa9.5□□□□□ -0.89
VRK3-216ENST00000599342 ATG4AQ8WYN0 398 aa9.5□□□□□ -0.89
VRK3-216ENST00000599342 HES6Q96HZ4 224 aa9.5□□□□□ -0.89
VRK3-216ENST00000599342 FRMD8P1Q9BZ68 369 aaPredicted RBP9.5□□□□□ -0.89
VRK3-216ENST00000599342 PITPNM3Q9BZ71 974 aa9.5□□□□□ -0.89
VRK3-216ENST00000599342 TSGA10Q9BZW7 698 aa9.5□□□□□ -0.89
VRK3-216ENST00000599342 KLHL25Q9H0H3 589 aa9.5□□□□□ -0.89
VRK3-216ENST00000599342 XKR8Q9H6D3 395 aa9.5□□□□□ -0.89
VRK3-216ENST00000599342 IMPACTQ9P2X3 320 aa9.5□□□□□ -0.89
VRK3-216ENST00000599342 POLG2Q9UHN1 485 aa9.5□□□□□ -0.89
VRK3-216ENST00000599342 G3BP2Q9UN86 482 aaKnown RBP9.5□□□□□ -0.89
VRK3-216ENST00000599342 CAPN6Q9Y6Q1 641 aa9.5□□□□□ -0.89
VRK3-216ENST00000599342 TCRBV7S2A1N4TA0A589 114 aa9.49□□□□□ -0.89
VRK3-216ENST00000599342 OR51F1A6NGY5 319 aa9.49□□□□□ -0.89
VRK3-216ENST00000599342 C9J4A7 227 aa9.49□□□□□ -0.89
VRK3-216ENST00000599342 K7EM74 188 aa9.49□□□□□ -0.89
VRK3-216ENST00000599342 LIASO43766 372 aa9.49□□□□□ -0.89
VRK3-216ENST00000599342 HBQ1P09105 142 aa9.49□□□□□ -0.89
VRK3-216ENST00000599342 PVRP15151 417 aa9.49□□□□□ -0.89
VRK3-216ENST00000599342 AGXTP21549 392 aa9.49□□□□□ -0.89
VRK3-216ENST00000599342 FOXN2P32314 431 aa9.49□□□□□ -0.89
VRK3-216ENST00000599342 RORAP35398 523 aa9.49□□□□□ -0.89
VRK3-216ENST00000599342 PPARGP37231 505 aaPredicted RBP9.49□□□□□ -0.89
VRK3-216ENST00000599342 FDFT1P37268 417 aa9.49□□□□□ -0.89
VRK3-216ENST00000599342 PRAMEP78395 509 aa9.49□□□□□ -0.89
VRK3-216ENST00000599342 PLOD1Q02809 727 aaPredicted RBP9.49□□□□□ -0.89
VRK3-216ENST00000599342 CHAF1BQ13112 559 aa9.49□□□□□ -0.89
VRK3-216ENST00000599342 PLEKHS1Q5SXH7 462 aa9.49□□□□□ -0.89
VRK3-216ENST00000599342 CPZQ66K79 652 aa9.49□□□□□ -0.89
VRK3-216ENST00000599342 ATCAYQ86WG3 371 aa9.49□□□□□ -0.89
VRK3-216ENST00000599342 TBC1D21Q8IYX1 336 aa9.49□□□□□ -0.89
VRK3-216ENST00000599342 ADGRF3Q8IZF5 1079 aa9.49□□□□□ -0.89
VRK3-216ENST00000599342 CCDC89Q8N998 374 aa9.49□□□□□ -0.89
VRK3-216ENST00000599342 C19orf47Q8N9M1 422 aaKnown RBP9.49□□□□□ -0.89
VRK3-216ENST00000599342 SPC24Q8NBT2 197 aa9.49□□□□□ -0.89
VRK3-216ENST00000599342 OR5AR1Q8NGP9 310 aa9.49□□□□□ -0.89
VRK3-216ENST00000599342 OR5K2Q8NHB8 316 aa9.49□□□□□ -0.89
VRK3-216ENST00000599342 TRAPPC9Q96Q05 1148 aa9.49□□□□□ -0.89
VRK3-216ENST00000599342 DPH2Q9BQC3 489 aaPredicted RBP9.49□□□□□ -0.89
VRK3-216ENST00000599342 SLC25A23Q9BV35 468 aa9.49□□□□□ -0.89
VRK3-216ENST00000599342 TSSK1BQ9BXA7 367 aa9.49□□□□□ -0.89
VRK3-216ENST00000599342 NLNQ9BYT8 704 aa9.49□□□□□ -0.89
VRK3-216ENST00000599342 TRIM55Q9BYV6 548 aa9.49□□□□□ -0.89
VRK3-216ENST00000599342 ING2Q9H160 280 aa9.49□□□□□ -0.89
VRK3-216ENST00000599342 PCMTD2Q9NV79 361 aa9.49□□□□□ -0.89
VRK3-216ENST00000599342 TCFL5Q9UL49 500 aa9.49□□□□□ -0.89
VRK3-216ENST00000599342 ICKQ9UPZ9 632 aa9.49□□□□□ -0.89
VRK3-216ENST00000599342 ZNF148Q9UQR1 794 aa9.49□□□□□ -0.89
VRK3-216ENST00000599342 PADI2Q9Y2J8 665 aa9.49□□□□□ -0.89
VRK3-216ENST00000599342 TDRKHQ9Y2W6 561 aaKnown RBP9.49□□□□□ -0.89
VRK3-216ENST00000599342 PRSS21Q9Y6M0 314 aa9.49□□□□□ -0.89
VRK3-216ENST00000599342 A0A0U1RQJ8 604 aa9.48□□□□□ -0.89
VRK3-216ENST00000599342 CCDC162PA2VCL2 907 aa9.48□□□□□ -0.89
VRK3-216ENST00000599342 ZNF749O43361 778 aa9.48□□□□□ -0.89
VRK3-216ENST00000599342 KRT86O43790 486 aa9.48□□□□□ -0.89
VRK3-216ENST00000599342 TMEM63AO94886 807 aa9.48□□□□□ -0.89
VRK3-216ENST00000599342 SUN1O94901 812 aa9.48□□□□□ -0.89
VRK3-216ENST00000599342 GOT2P00505 430 aaKnown RBP9.48□□□□□ -0.89
VRK3-216ENST00000599342 CHRM5P08912 532 aaPredicted RBP9.48□□□□□ -0.89
VRK3-216ENST00000599342 UGT2B7P16662 529 aa9.48□□□□□ -0.89
VRK3-216ENST00000599342 PSMA3P25788 255 aa9.48□□□□□ -0.89
VRK3-216ENST00000599342 CDC25BP30305 580 aa9.48□□□□□ -0.89
VRK3-216ENST00000599342 PTGIRP43119 386 aa9.48□□□□□ -0.89
VRK3-216ENST00000599342 CCL11P51671 97 aa9.48□□□□□ -0.89
VRK3-216ENST00000599342 NCF4Q15080 339 aa9.48□□□□□ -0.89
VRK3-216ENST00000599342 OASLQ15646 514 aaKnown RBP9.48□□□□□ -0.89
VRK3-216ENST00000599342 PTCHD3Q3KNS1 767 aa9.48□□□□□ -0.89
VRK3-216ENST00000599342 FASTKD1Q53R41 847 aaKnown RBP9.48□□□□□ -0.89
VRK3-216ENST00000599342 ZNF789Q5FWF6 425 aa9.48□□□□□ -0.89
VRK3-216ENST00000599342 AARS2Q5JTZ9 985 aaKnown RBP9.48□□□□□ -0.89
VRK3-216ENST00000599342 TSTD2Q5T7W7 516 aa9.48□□□□□ -0.89
VRK3-216ENST00000599342 FAM198BQ6UWH4 519 aa9.48□□□□□ -0.89
VRK3-216ENST00000599342 NAPRTQ6XQN6 538 aa9.48□□□□□ -0.89
VRK3-216ENST00000599342 UNC5AQ6ZN44 842 aa9.48□□□□□ -0.89
VRK3-216ENST00000599342 CDHR3Q6ZTQ4 885 aa9.48□□□□□ -0.89
VRK3-216ENST00000599342 TRIM73Q86UV7 250 aa9.48□□□□□ -0.89
VRK3-216ENST00000599342 RAB43Q86YS6 212 aa9.48□□□□□ -0.89
VRK3-216ENST00000599342 RNF10Q8N5U6 811 aaKnown RBP9.48□□□□□ -0.89
VRK3-216ENST00000599342 EFCAB3Q8N7B9 438 aa9.48□□□□□ -0.89
VRK3-216ENST00000599342 PPHLN1Q8NEY8 458 aaKnown RBP9.48□□□□□ -0.89
VRK3-216ENST00000599342 OR13J1Q8NGT2 312 aa9.48□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 55.6 ms