RNA–Protein interactions for RNA: ENST00000596549.5

LIG1-212, Transcript of DNA ligase 1, humanhuman

TSL 4

Gene LIG1, Length 580 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-212ENST00000596549 FLVCR1-AS1Q8TAF5 88 aa12.66□□□□□ -0.38
LIG1-212ENST00000596549 TBRG4Q969Z0 631 aaKnown RBP eCLIP12.66□□□□□ -0.38
LIG1-212ENST00000596549 CATSPER2Q96P56 530 aa12.66□□□□□ -0.38
LIG1-212ENST00000596549 TUBB2BQ9BVA1 445 aa12.66□□□□□ -0.38
LIG1-212ENST00000596549 CHRAC1Q9NRG0 131 aa12.66□□□□□ -0.38
LIG1-212ENST00000596549 C1GALT1Q9NS00 363 aa12.66□□□□□ -0.38
LIG1-212ENST00000596549 DRG1Q9Y295 367 aaKnown RBP12.66□□□□□ -0.38
LIG1-212ENST00000596549 SETXQ7Z333 2677 aaKnown RBP12.65□□□□□ -0.38
LIG1-212ENST00000596549 IQCF5A8MTL0 148 aa12.65□□□□□ -0.38
LIG1-212ENST00000596549 SCRG1O75711 98 aa12.65□□□□□ -0.38
LIG1-212ENST00000596549 ZIC2O95409 532 aaPredicted RBP12.65□□□□□ -0.38
LIG1-212ENST00000596549 OR56A5P0C7T3 313 aa12.65□□□□□ -0.38
LIG1-212ENST00000596549 TCN2P20062 427 aa12.65□□□□□ -0.38
LIG1-212ENST00000596549 NMBRP28336 390 aa12.65□□□□□ -0.38
LIG1-212ENST00000596549 PEBP1P30086 187 aaKnown RBP12.65□□□□□ -0.38
LIG1-212ENST00000596549 CCR7P32248 378 aa12.65□□□□□ -0.38
LIG1-212ENST00000596549 ARL4DP49703 201 aa12.65□□□□□ -0.38
LIG1-212ENST00000596549 RPS18P62269 152 aaKnown RBP12.65□□□□□ -0.38
LIG1-212ENST00000596549 KCNAB2Q13303 367 aa12.65□□□□□ -0.38
LIG1-212ENST00000596549 SYTL3Q4VX76 610 aa12.65□□□□□ -0.38
LIG1-212ENST00000596549 PCID2Q5JVF3 399 aa12.65□□□□□ -0.38
LIG1-212ENST00000596549 LYPLAL1Q5VWZ2 237 aa12.65□□□□□ -0.38
LIG1-212ENST00000596549 FAM199XQ6PEV8 388 aaPredicted RBP12.65□□□□□ -0.38
LIG1-212ENST00000596549 TRIM73Q86UV7 250 aa12.65□□□□□ -0.38
LIG1-212ENST00000596549 SLC38A9Q8NBW4 561 aa12.65□□□□□ -0.38
LIG1-212ENST00000596549 OR6P1Q8NGX9 317 aa12.65□□□□□ -0.38
LIG1-212ENST00000596549 OR5K2Q8NHB8 316 aa12.65□□□□□ -0.38
LIG1-212ENST00000596549 FCRL4Q96PJ5 515 aa12.65□□□□□ -0.38
LIG1-212ENST00000596549 TRAPPC9Q96Q05 1148 aa12.65□□□□□ -0.38
LIG1-212ENST00000596549 MENTQ9BUN1 341 aa12.65□□□□□ -0.38
LIG1-212ENST00000596549 AP1M1Q9BXS5 423 aa12.65□□□□□ -0.38
LIG1-212ENST00000596549 KLHL25Q9H0H3 589 aa12.65□□□□□ -0.38
LIG1-212ENST00000596549 ADNPQ9H2P0 1102 aa12.65□□□□□ -0.38
LIG1-212ENST00000596549 LATS2Q9NRM7 1088 aa12.65□□□□□ -0.38
LIG1-212ENST00000596549 SYBUQ9NX95 663 aa12.65□□□□□ -0.38
LIG1-212ENST00000596549 ACTR10Q9NZ32 417 aa12.65□□□□□ -0.38
LIG1-212ENST00000596549 TTC7AQ9ULT0 858 aaPredicted RBP12.65□□□□□ -0.38
LIG1-212ENST00000596549 PLAGL1Q9UM63 463 aa12.65□□□□□ -0.38
LIG1-212ENST00000596549 ASF1AQ9Y294 204 aa12.65□□□□□ -0.38
LIG1-212ENST00000596549 PCDHGA6Q9Y5G7 932 aa12.65□□□□□ -0.38
LIG1-212ENST00000596549 SPTBP11277 2137 aa12.65□□□□□ -0.38
LIG1-212ENST00000596549 HELZ2Q9BYK8 2649 aaKnown RBP12.64□□□□□ -0.39
LIG1-212ENST00000596549 PCM1Q15154 2024 aa12.64□□□□□ -0.39
LIG1-212ENST00000596549 C2orf74A8MZ97 194 aa12.64□□□□□ -0.39
LIG1-212ENST00000596549 J3QKU1 62 aa12.64□□□□□ -0.39
LIG1-212ENST00000596549 SLC28A2O43868 658 aa12.64□□□□□ -0.39
LIG1-212ENST00000596549 CPNE3O75131 537 aaKnown RBP12.64□□□□□ -0.39
LIG1-212ENST00000596549 TMEM63AO94886 807 aa12.64□□□□□ -0.39
LIG1-212ENST00000596549 MT-ND3P03897 115 aa12.64□□□□□ -0.39
LIG1-212ENST00000596549 MSL3P1P0C860 447 aa12.64□□□□□ -0.39
LIG1-212ENST00000596549 UGT2B7P16662 529 aa12.64□□□□□ -0.39
LIG1-212ENST00000596549 TPSB2P20231 275 aa12.64□□□□□ -0.39
LIG1-212ENST00000596549 MGAT1P26572 445 aa12.64□□□□□ -0.39
LIG1-212ENST00000596549 CCR10P46092 362 aa12.64□□□□□ -0.39
LIG1-212ENST00000596549 CSE1LP55060 971 aaKnown RBP12.64□□□□□ -0.39
LIG1-212ENST00000596549 KCNJ11Q14654 390 aa12.64□□□□□ -0.39
LIG1-212ENST00000596549 TRIP13Q15645 432 aaPredicted RBP12.64□□□□□ -0.39
LIG1-212ENST00000596549 TPSAB1Q15661 275 aa12.64□□□□□ -0.39
LIG1-212ENST00000596549 DEFB109BQ30KR1 87 aa12.64□□□□□ -0.39
LIG1-212ENST00000596549 FASTKD1Q53R41 847 aaKnown RBP12.64□□□□□ -0.39
LIG1-212ENST00000596549 ZNF517Q6ZMY9 492 aaPredicted RBP12.64□□□□□ -0.39
LIG1-212ENST00000596549 NLRP9Q7RTR0 991 aa12.64□□□□□ -0.39
LIG1-212ENST00000596549 GSTA5Q7RTV2 222 aa12.64□□□□□ -0.39
LIG1-212ENST00000596549 PRICKLE2Q7Z3G6 844 aa12.64□□□□□ -0.39
LIG1-212ENST00000596549 BPHLQ86WA6 291 aaPredicted RBP12.64□□□□□ -0.39
LIG1-212ENST00000596549 TMEM126BQ8IUX1 230 aa12.64□□□□□ -0.39
LIG1-212ENST00000596549 TBC1D21Q8IYX1 336 aa12.64□□□□□ -0.39
LIG1-212ENST00000596549 SLC22A15Q8IZD6 547 aa12.64□□□□□ -0.39
LIG1-212ENST00000596549 KRT222Q8N1A0 295 aa12.64□□□□□ -0.39
LIG1-212ENST00000596549 RASGEF1CQ8N431 466 aa12.64□□□□□ -0.39
LIG1-212ENST00000596549 OR1L3Q8NH93 324 aa12.64□□□□□ -0.39
LIG1-212ENST00000596549 MAIP1Q8WWC4 291 aa12.64□□□□□ -0.39
LIG1-212ENST00000596549 MFSD3Q96ES6 412 aa12.64□□□□□ -0.39
LIG1-212ENST00000596549 SLC25A18Q9H1K4 315 aa12.64□□□□□ -0.39
LIG1-212ENST00000596549 P2RY12Q9H244 342 aa12.64□□□□□ -0.39
LIG1-212ENST00000596549 ACTL8Q9H568 366 aa12.64□□□□□ -0.39
LIG1-212ENST00000596549 CATSPERZQ9NTU4 200 aa12.64□□□□□ -0.39
LIG1-212ENST00000596549 SPHK1Q9NYA1 384 aa12.64□□□□□ -0.39
LIG1-212ENST00000596549 TUBD1Q9UJT1 453 aa12.64□□□□□ -0.39
LIG1-212ENST00000596549 CCDC88CQ9P219 2028 aa12.64□□□□□ -0.39
LIG1-212ENST00000596549 PIPSLA2A3N6 862 aa12.63□□□□□ -0.39
LIG1-212ENST00000596549 C21orf140B9A014 251 aa12.63□□□□□ -0.39
LIG1-212ENST00000596549 TMEM150CB9EJG8 249 aa12.63□□□□□ -0.39
LIG1-212ENST00000596549 H3BMH7 237 aa12.63□□□□□ -0.39
LIG1-212ENST00000596549 HCRTR1O43613 425 aa12.63□□□□□ -0.39
LIG1-212ENST00000596549 KATNA1O75449 491 aa12.63□□□□□ -0.39
LIG1-212ENST00000596549 GPC4O75487 556 aa12.63□□□□□ -0.39
LIG1-212ENST00000596549 PKLRP30613 574 aa12.63□□□□□ -0.39
LIG1-212ENST00000596549 SHMT2P34897 504 aa12.63□□□□□ -0.39
LIG1-212ENST00000596549 RORAP35398 523 aa12.63□□□□□ -0.39
LIG1-212ENST00000596549 GABRA4P48169 554 aa12.63□□□□□ -0.39
LIG1-212ENST00000596549 VPS41P49754 854 aa12.63□□□□□ -0.39
LIG1-212ENST00000596549 TERF1P54274 439 aa12.63□□□□□ -0.39
LIG1-212ENST00000596549 MC1RQ01726 317 aa12.63□□□□□ -0.39
LIG1-212ENST00000596549 IL10RAQ13651 578 aa12.63□□□□□ -0.39
LIG1-212ENST00000596549 ERV3-1Q14264 604 aa12.63□□□□□ -0.39
LIG1-212ENST00000596549 GRB7Q14451 532 aa12.63□□□□□ -0.39
LIG1-212ENST00000596549 ZIC1Q15915 447 aa12.63□□□□□ -0.39
LIG1-212ENST00000596549 DEFB110Q30KQ9 67 aa12.63□□□□□ -0.39
LIG1-212ENST00000596549 AARS2Q5JTZ9 985 aaKnown RBP12.63□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 67.4 ms