RNA–Protein interactions for RNA: ENST00000594862.1

SHKBP1-204, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 3

Gene SHKBP1, Length 623 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-204ENST00000594862 ACADLP28330 430 aa17.23■□□□□ 0.35
SHKBP1-204ENST00000594862 STAT5AP42229 794 aa17.23■□□□□ 0.35
SHKBP1-204ENST00000594862 TUBB4BP68371 445 aa17.23■□□□□ 0.35
SHKBP1-204ENST00000594862 CRADDP78560 199 aa17.23■□□□□ 0.35
SHKBP1-204ENST00000594862 TUBB2AQ13885 445 aa17.23■□□□□ 0.35
SHKBP1-204ENST00000594862 KIAA1614Q5VZ46 1190 aa17.23■□□□□ 0.35
SHKBP1-204ENST00000594862 CASC4Q6P4E1 433 aa17.23■□□□□ 0.35
SHKBP1-204ENST00000594862 HOOK3Q86VS8 718 aa17.23■□□□□ 0.35
SHKBP1-204ENST00000594862 SLC22A15Q8IZD6 547 aa17.23■□□□□ 0.35
SHKBP1-204ENST00000594862 OR5K2Q8NHB8 316 aa17.23■□□□□ 0.35
SHKBP1-204ENST00000594862 COG1Q8WTW3 980 aa17.23■□□□□ 0.35
SHKBP1-204ENST00000594862 SLC45A3Q96JT2 553 aa17.23■□□□□ 0.35
SHKBP1-204ENST00000594862 CATSPER2Q96P56 530 aa17.23■□□□□ 0.35
SHKBP1-204ENST00000594862 TUBB2BQ9BVA1 445 aa17.23■□□□□ 0.35
SHKBP1-204ENST00000594862 LATS2Q9NRM7 1088 aa17.23■□□□□ 0.35
SHKBP1-204ENST00000594862 FGF21Q9NSA1 209 aa17.23■□□□□ 0.35
SHKBP1-204ENST00000594862 SOHLH2Q9NX45 425 aa17.23■□□□□ 0.35
SHKBP1-204ENST00000594862 TRMT1Q9NXH9 659 aaKnown RBP17.23■□□□□ 0.35
SHKBP1-204ENST00000594862 OR6C2Q9NZP2 312 aa17.23■□□□□ 0.35
SHKBP1-204ENST00000594862 CCNYL3P0C7X3 344 aa17.22■□□□□ 0.35
SHKBP1-204ENST00000594862 MSL3P1P0C860 447 aa17.22■□□□□ 0.35
SHKBP1-204ENST00000594862 SFTPCP11686 197 aa17.22■□□□□ 0.35
SHKBP1-204ENST00000594862 OGNP20774 298 aaKnown RBP17.22■□□□□ 0.35
SHKBP1-204ENST00000594862 NMBRP28336 390 aa17.22■□□□□ 0.35
SHKBP1-204ENST00000594862 KPNA2P52292 529 aaKnown RBP17.22■□□□□ 0.35
SHKBP1-204ENST00000594862 SEMA3AQ14563 771 aa17.22■□□□□ 0.35
SHKBP1-204ENST00000594862 PPP1R7Q15435 360 aa17.22■□□□□ 0.35
SHKBP1-204ENST00000594862 TYSND1Q2T9J0 566 aa17.22■□□□□ 0.35
SHKBP1-204ENST00000594862 CRTC2Q53ET0 693 aaPredicted RBP17.22■□□□□ 0.35
SHKBP1-204ENST00000594862 UNC5DQ6UXZ4 953 aa17.22■□□□□ 0.35
SHKBP1-204ENST00000594862 CPT1BQ92523 772 aa17.22■□□□□ 0.35
SHKBP1-204ENST00000594862 RUNDC3BQ96NL0 473 aa17.22■□□□□ 0.35
SHKBP1-204ENST00000594862 PITPNM3Q9BZ71 974 aa17.22■□□□□ 0.35
SHKBP1-204ENST00000594862 MARCH4Q9P2E8 410 aaPredicted RBP17.22■□□□□ 0.35
SHKBP1-204ENST00000594862 LNPEPQ9UIQ6 1025 aa17.22■□□□□ 0.35
SHKBP1-204ENST00000594862 ASH1LQ9NR48 2969 aaKnown RBP17.22■□□□□ 0.35
SHKBP1-204ENST00000594862 FAM237BA0A1B0GVD1 139 aa17.21■□□□□ 0.35
SHKBP1-204ENST00000594862 SDR42E2A6NKP2 422 aa17.21■□□□□ 0.35
SHKBP1-204ENST00000594862 BHMG1C9JSJ3 638 aaPredicted RBP17.21■□□□□ 0.35
SHKBP1-204ENST00000594862 BTN3A1O00481 513 aa17.21■□□□□ 0.35
SHKBP1-204ENST00000594862 SPAG6O75602 509 aa17.21■□□□□ 0.35
SHKBP1-204ENST00000594862 KIAA0754O94854 1291 aa17.21■□□□□ 0.35
SHKBP1-204ENST00000594862 VAPBO95292 243 aa17.21■□□□□ 0.35
SHKBP1-204ENST00000594862 EBLN1P0CF75 366 aa17.21■□□□□ 0.35
SHKBP1-204ENST00000594862 CCR7P32248 378 aa17.21■□□□□ 0.35
SHKBP1-204ENST00000594862 ADARP55265 1226 aaKnown RBP17.21■□□□□ 0.35
SHKBP1-204ENST00000594862 C19orf57Q0VDD7 668 aa17.21■□□□□ 0.35
SHKBP1-204ENST00000594862 HSPA14Q0VDF9 509 aa17.21■□□□□ 0.35
SHKBP1-204ENST00000594862 SRSF6Q13247 344 aaKnown RBP17.21■□□□□ 0.35
SHKBP1-204ENST00000594862 BRD3Q15059 726 aa17.21■□□□□ 0.35
SHKBP1-204ENST00000594862 MICALCLQ6ZW33 695 aa17.21■□□□□ 0.35
SHKBP1-204ENST00000594862 TIPARPQ7Z3E1 657 aaKnown RBP17.21■□□□□ 0.35
SHKBP1-204ENST00000594862 DCUN1D3Q8IWE4 304 aa17.21■□□□□ 0.35
SHKBP1-204ENST00000594862 LMNTD2Q8IXW0 634 aa17.21■□□□□ 0.35
SHKBP1-204ENST00000594862 PPIL6Q8IXY8 311 aa17.21■□□□□ 0.35
SHKBP1-204ENST00000594862 PHC3Q8NDX5 983 aa17.21■□□□□ 0.35
SHKBP1-204ENST00000594862 OR5AR1Q8NGP9 310 aa17.21■□□□□ 0.35
SHKBP1-204ENST00000594862 SLCO2A1Q92959 643 aa17.21■□□□□ 0.35
SHKBP1-204ENST00000594862 MFSD3Q96ES6 412 aa17.21■□□□□ 0.35
SHKBP1-204ENST00000594862 ARHGAP9Q9BRR9 750 aa17.21■□□□□ 0.35
SHKBP1-204ENST00000594862 RAB11FIP5Q9BXF6 653 aa17.21■□□□□ 0.35
SHKBP1-204ENST00000594862 FAM117AQ9C073 453 aa17.21■□□□□ 0.35
SHKBP1-204ENST00000594862 P2RY12Q9H244 342 aa17.21■□□□□ 0.35
SHKBP1-204ENST00000594862 KCND3Q9UK17 655 aa17.21■□□□□ 0.35
SHKBP1-204ENST00000594862 NEU2Q9Y3R4 380 aa17.21■□□□□ 0.35
SHKBP1-204ENST00000594862 RPS6KL1Q9Y6S9 549 aa17.21■□□□□ 0.35
SHKBP1-204ENST00000594862 TCRBV7S3A2A0A539 114 aa17.2■□□□□ 0.34
SHKBP1-204ENST00000594862 PIPSLA2A3N6 862 aa17.2■□□□□ 0.34
SHKBP1-204ENST00000594862 CPNE3O75131 537 aaKnown RBP17.2■□□□□ 0.34
SHKBP1-204ENST00000594862 GPC4O75487 556 aa17.2■□□□□ 0.34
SHKBP1-204ENST00000594862 TMEM63AO94886 807 aa17.2■□□□□ 0.34
SHKBP1-204ENST00000594862 SLCO2B1O94956 709 aa17.2■□□□□ 0.34
SHKBP1-204ENST00000594862 ESR1P03372 595 aa17.2■□□□□ 0.34
SHKBP1-204ENST00000594862 FOLR1P15328 257 aa17.2■□□□□ 0.34
SHKBP1-204ENST00000594862 AOAHP28039 575 aa17.2■□□□□ 0.34
SHKBP1-204ENST00000594862 PRDX3P30048 256 aaKnown RBP17.2■□□□□ 0.34
SHKBP1-204ENST00000594862 ARCN1P48444 511 aaKnown RBP17.2■□□□□ 0.34
SHKBP1-204ENST00000594862 PRKG2Q13237 762 aa17.2■□□□□ 0.34
SHKBP1-204ENST00000594862 TTC23LQ6PF05 361 aa17.2■□□□□ 0.34
SHKBP1-204ENST00000594862 OTOAQ7RTW8 1153 aa17.2■□□□□ 0.34
SHKBP1-204ENST00000594862 PCGF5Q86SE9 256 aa17.2■□□□□ 0.34
SHKBP1-204ENST00000594862 CAND1Q86VP6 1230 aaKnown RBP17.2■□□□□ 0.34
SHKBP1-204ENST00000594862 GABPB2Q8TAK5 448 aaPredicted RBP17.2■□□□□ 0.34
SHKBP1-204ENST00000594862 SEC14L1Q92503 715 aa17.2■□□□□ 0.34
SHKBP1-204ENST00000594862 MED8Q96G25 268 aa17.2■□□□□ 0.34
SHKBP1-204ENST00000594862 SERPINB12Q96P63 405 aa17.2■□□□□ 0.34
SHKBP1-204ENST00000594862 SLC12A9Q9BXP2 914 aa17.2■□□□□ 0.34
SHKBP1-204ENST00000594862 INTS10Q9NVR2 710 aaKnown RBP17.2■□□□□ 0.34
SHKBP1-204ENST00000594862 ACTR10Q9NZ32 417 aa17.2■□□□□ 0.34
SHKBP1-204ENST00000594862 PADI1Q9ULC6 663 aa17.2■□□□□ 0.34
SHKBP1-204ENST00000594862 ICKQ9UPZ9 632 aa17.2■□□□□ 0.34
SHKBP1-204ENST00000594862 C21orf140B9A014 251 aa17.19■□□□□ 0.34
SHKBP1-204ENST00000594862 BTN3A3O00478 584 aa17.19■□□□□ 0.34
SHKBP1-204ENST00000594862 PRB1P04280 392 aa17.19■□□□□ 0.34
SHKBP1-204ENST00000594862 ITGB6P18564 788 aa17.19■□□□□ 0.34
SHKBP1-204ENST00000594862 ARNTP27540 789 aa17.19■□□□□ 0.34
SHKBP1-204ENST00000594862 ATP5DP30049 168 aa17.19■□□□□ 0.34
SHKBP1-204ENST00000594862 RAB28P51157 221 aa17.19■□□□□ 0.34
SHKBP1-204ENST00000594862 EIF3BP55884 814 aaKnown RBP17.19■□□□□ 0.34
SHKBP1-204ENST00000594862 GNG11P61952 73 aa17.19■□□□□ 0.34
Retrieved 100 of 20,778 RNA–protein pairs in 30.7 ms