RNA–Protein interactions for RNA: ENST00000572253.5

CCDC40-207, Transcript of coiled-coil domain containing 40, humanhuman

TSL 2

Gene CCDC40, Length 3,962 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-207ENST00000572253 DOCK4Q8N1I0 1966 aa10.56□□□□□ -0.72
CCDC40-207ENST00000572253 ANKRD36A6QL64 1941 aa10.56□□□□□ -0.72
CCDC40-207ENST00000572253 TMEM247A6NEH6 219 aa10.56□□□□□ -0.72
CCDC40-207ENST00000572253 FFAR3O14843 346 aa10.56□□□□□ -0.72
CCDC40-207ENST00000572253 SLC16A6O15403 523 aa10.56□□□□□ -0.72
CCDC40-207ENST00000572253 GPR42O15529 346 aa10.56□□□□□ -0.72
CCDC40-207ENST00000572253 KDELR3O43731 214 aa10.56□□□□□ -0.72
CCDC40-207ENST00000572253 DUSP11O75319 330 aaKnown RBP10.56□□□□□ -0.72
CCDC40-207ENST00000572253 ERN1O75460 977 aaKnown RBP10.56□□□□□ -0.72
CCDC40-207ENST00000572253 WDR47O94967 919 aa10.56□□□□□ -0.72
CCDC40-207ENST00000572253 SERPINA1P01009 418 aa10.56□□□□□ -0.72
CCDC40-207ENST00000572253 FTH1P02794 183 aa10.56□□□□□ -0.72
CCDC40-207ENST00000572253 ZNF7P17097 686 aaPredicted RBP10.56□□□□□ -0.72
CCDC40-207ENST00000572253 PRKACGP22612 351 aa10.56□□□□□ -0.72
CCDC40-207ENST00000572253 PSMB9P28065 219 aa10.56□□□□□ -0.72
CCDC40-207ENST00000572253 GRK3P35626 688 aa10.56□□□□□ -0.72
CCDC40-207ENST00000572253 HPCAL1P37235 193 aa10.56□□□□□ -0.72
CCDC40-207ENST00000572253 HSPA7P48741 367 aa10.56□□□□□ -0.72
CCDC40-207ENST00000572253 MLLT10P55197 1068 aa10.56□□□□□ -0.72
CCDC40-207ENST00000572253 CDH4P55283 916 aa10.56□□□□□ -0.72
CCDC40-207ENST00000572253 CCDC81Q6ZN84 652 aa10.56□□□□□ -0.72
CCDC40-207ENST00000572253 SLC16A12Q6ZSM3 486 aa10.56□□□□□ -0.72
CCDC40-207ENST00000572253 PIWIL3Q7Z3Z3 882 aaKnown RBP10.56□□□□□ -0.72
CCDC40-207ENST00000572253 GPR149Q86SP6 731 aa10.56□□□□□ -0.72
CCDC40-207ENST00000572253 P2RY8Q86VZ1 359 aa10.56□□□□□ -0.72
CCDC40-207ENST00000572253 VMP1Q96GC9 406 aa10.56□□□□□ -0.72
CCDC40-207ENST00000572253 SEPT5Q99719 369 aaPredicted RBP10.56□□□□□ -0.72
CCDC40-207ENST00000572253 ASPSCR1Q9BZE9 553 aa10.56□□□□□ -0.72
CCDC40-207ENST00000572253 GPR63Q9BZJ6 419 aa10.56□□□□□ -0.72
CCDC40-207ENST00000572253 TRIT1Q9H3H1 467 aaKnown RBP10.56□□□□□ -0.72
CCDC40-207ENST00000572253 RIBC2Q9H4K1 309 aa10.56□□□□□ -0.72
CCDC40-207ENST00000572253 EPS8L2Q9H6S3 715 aa10.56□□□□□ -0.72
CCDC40-207ENST00000572253 CARS2Q9HA77 564 aaKnown RBP10.56□□□□□ -0.72
CCDC40-207ENST00000572253 CCNB1IP1Q9NPC3 277 aa10.56□□□□□ -0.72
CCDC40-207ENST00000572253 C1orf109Q9NX04 203 aa10.56□□□□□ -0.72
CCDC40-207ENST00000572253 NOD1Q9Y239 953 aa10.56□□□□□ -0.72
CCDC40-207ENST00000572253 PCDHGC4Q9Y5F7 938 aa10.56□□□□□ -0.72
CCDC40-207ENST00000572253 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP10.55□□□□□ -0.72
CCDC40-207ENST00000572253 OR7A17O14581 309 aa10.55□□□□□ -0.72
CCDC40-207ENST00000572253 ACSL4O60488 711 aa10.55□□□□□ -0.72
CCDC40-207ENST00000572253 TLR5O60602 858 aa10.55□□□□□ -0.72
CCDC40-207ENST00000572253 GABARAPO95166 117 aa10.55□□□□□ -0.72
CCDC40-207ENST00000572253 IGLV3-27P01718 113 aa10.55□□□□□ -0.72
CCDC40-207ENST00000572253 UGT2B4P06133 528 aa10.55□□□□□ -0.72
CCDC40-207ENST00000572253 HTR1AP08908 422 aa10.55□□□□□ -0.72
CCDC40-207ENST00000572253 ITGAMP11215 1152 aa10.55□□□□□ -0.72
CCDC40-207ENST00000572253 MGAT3Q09327 533 aa10.55□□□□□ -0.72
CCDC40-207ENST00000572253 ZNF177Q13360 481 aaPredicted RBP10.55□□□□□ -0.72
CCDC40-207ENST00000572253 DSC3Q14574 896 aa10.55□□□□□ -0.72
CCDC40-207ENST00000572253 INAQ16352 499 aa10.55□□□□□ -0.72
CCDC40-207ENST00000572253 NKG7Q16617 165 aa10.55□□□□□ -0.72
CCDC40-207ENST00000572253 PLA2G4EQ3MJ16 856 aa10.55□□□□□ -0.72
CCDC40-207ENST00000572253 CCDC92Q53HC0 331 aaPredicted RBP10.55□□□□□ -0.72
CCDC40-207ENST00000572253 RUNDC3AQ59EK9 446 aa10.55□□□□□ -0.72
CCDC40-207ENST00000572253 CERS6Q6ZMG9 384 aa10.55□□□□□ -0.72
CCDC40-207ENST00000572253 RBM23Q86U06 439 aaKnown RBP10.55□□□□□ -0.72
CCDC40-207ENST00000572253 DCP2Q8IU60 420 aaKnown RBP10.55□□□□□ -0.72
CCDC40-207ENST00000572253 PLD3Q8IV08 490 aa10.55□□□□□ -0.72
CCDC40-207ENST00000572253 CEP295NLQ96MC4 621 aa10.55□□□□□ -0.72
CCDC40-207ENST00000572253 SGIP1Q9BQI5 828 aa10.55□□□□□ -0.72
CCDC40-207ENST00000572253 U3KQV3 271 aa10.55□□□□□ -0.72
CCDC40-207ENST00000572253 ANKRD66B4E2M5 251 aa10.55□□□□□ -0.72
CCDC40-207ENST00000572253 H0Y626 953 aa10.55□□□□□ -0.72
CCDC40-207ENST00000572253 CBX4O00257 560 aa10.55□□□□□ -0.72
CCDC40-207ENST00000572253 TOR1BO14657 336 aa10.55□□□□□ -0.72
CCDC40-207ENST00000572253 ADAM23O75077 832 aa10.55□□□□□ -0.72
CCDC40-207ENST00000572253 TRIM16O95361 564 aa10.55□□□□□ -0.72
CCDC40-207ENST00000572253 S100A3P33764 101 aa10.55□□□□□ -0.72
CCDC40-207ENST00000572253 RGRP47804 291 aa10.55□□□□□ -0.72
CCDC40-207ENST00000572253 GP2P55259 537 aaKnown RBP10.55□□□□□ -0.72
CCDC40-207ENST00000572253 HUNKP57058 714 aa10.55□□□□□ -0.72
CCDC40-207ENST00000572253 PPP1R8Q12972 351 aaKnown RBP10.55□□□□□ -0.72
CCDC40-207ENST00000572253 TRAF3Q13114 568 aa10.55□□□□□ -0.72
CCDC40-207ENST00000572253 CDK5R2Q13319 367 aa10.55□□□□□ -0.72
CCDC40-207ENST00000572253 GTF2H3Q13889 308 aa10.55□□□□□ -0.72
CCDC40-207ENST00000572253 PAGE2BQ5JRK9 111 aa10.55□□□□□ -0.72
CCDC40-207ENST00000572253 NADSYN1Q6IA69 706 aa10.55□□□□□ -0.72
CCDC40-207ENST00000572253 NAT16Q8N8M0 369 aa10.55□□□□□ -0.72
CCDC40-207ENST00000572253 ZNF566Q969W8 418 aa10.55□□□□□ -0.72
CCDC40-207ENST00000572253 XRN2Q9H0D6 950 aaKnown RBP eCLIP10.55□□□□□ -0.72
CCDC40-207ENST00000572253 EXD2Q9NVH0 621 aa10.55□□□□□ -0.72
CCDC40-207ENST00000572253 SLC27A5Q9Y2P5 690 aa10.55□□□□□ -0.72
CCDC40-207ENST00000572253 NAALAD2Q9Y3Q0 740 aa10.55□□□□□ -0.72
CCDC40-207ENST00000572253 DGKAP23743 735 aa10.55□□□□□ -0.72
CCDC40-207ENST00000572253 PSMA3P25788 255 aa10.55□□□□□ -0.72
CCDC40-207ENST00000572253 C18orf21Q32NC0 220 aaPredicted RBP10.55□□□□□ -0.72
CCDC40-207ENST00000572253 C9orf131Q5VYM1 1079 aa10.55□□□□□ -0.72
CCDC40-207ENST00000572253 DET1Q7L5Y6 550 aa10.55□□□□□ -0.72
CCDC40-207ENST00000572253 ABI1Q8IZP0 508 aa10.55□□□□□ -0.72
CCDC40-207ENST00000572253 FRS2Q8WU20 508 aa10.55□□□□□ -0.72
CCDC40-207ENST00000572253 PYURFQ96I23 114 aa10.55□□□□□ -0.72
CCDC40-207ENST00000572253 ITCHQ96J02 903 aa10.55□□□□□ -0.72
CCDC40-207ENST00000572253 CDK5RAP1Q96SZ6 601 aaKnown RBP10.55□□□□□ -0.72
CCDC40-207ENST00000572253 PARVBQ9HBI1 364 aa10.55□□□□□ -0.72
CCDC40-207ENST00000572253 AKIP1Q9NQ31 210 aa10.55□□□□□ -0.72
CCDC40-207ENST00000572253 ZNF490Q9ULM2 529 aaPredicted RBP10.55□□□□□ -0.72
CCDC40-207ENST00000572253 SH3BP1Q9Y3L3 701 aa10.55□□□□□ -0.72
CCDC40-207ENST00000572253 ACTL7AQ9Y615 435 aa10.55□□□□□ -0.72
CCDC40-207ENST00000572253 ZFP37Q9Y6Q3 630 aaPredicted RBP10.55□□□□□ -0.72
CCDC40-207ENST00000572253 HSPE1-MOB4S4R3N1 261 aa10.55□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 37.5 ms