RNA–Protein interactions for RNA: ENST00000567963.6

CLN3-229, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,452 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-229ENST00000567963 SERTAD3Q9UJW9 196 aa15.59■□□□□ 0.09
CLN3-229ENST00000567963 PRSS21Q9Y6M0 314 aa15.59■□□□□ 0.09
CLN3-229ENST00000567963 TNRC6AQ8NDV7 1962 aaKnown RBP15.58■□□□□ 0.08
CLN3-229ENST00000567963 A0A0U1RQJ8 604 aa15.58■□□□□ 0.08
CLN3-229ENST00000567963 LIN7AO14910 233 aaPredicted RBP15.58■□□□□ 0.08
CLN3-229ENST00000567963 FTCDO95954 541 aa15.58■□□□□ 0.08
CLN3-229ENST00000567963 MSNP26038 577 aaKnown RBP15.58■□□□□ 0.08
CLN3-229ENST00000567963 CD97P48960 835 aa15.58■□□□□ 0.08
CLN3-229ENST00000567963 LMAN1P49257 510 aa15.58■□□□□ 0.08
CLN3-229ENST00000567963 KIF5AQ12840 1032 aa15.58■□□□□ 0.08
CLN3-229ENST00000567963 CPZQ66K79 652 aa15.58■□□□□ 0.08
CLN3-229ENST00000567963 LINC00523Q86TU6 105 aa15.58■□□□□ 0.08
CLN3-229ENST00000567963 TAB3Q8N5C8 712 aaPredicted RBP15.58■□□□□ 0.08
CLN3-229ENST00000567963 ENDOVQ8N8Q3 282 aaKnown RBP15.58■□□□□ 0.08
CLN3-229ENST00000567963 ADAMTS17Q8TE56 1095 aa15.58■□□□□ 0.08
CLN3-229ENST00000567963 HES6Q96HZ4 224 aa15.58■□□□□ 0.08
CLN3-229ENST00000567963 HGH1Q9BTY7 390 aa15.58■□□□□ 0.08
CLN3-229ENST00000567963 KLHL25Q9H0H3 589 aa15.58■□□□□ 0.08
CLN3-229ENST00000567963 ACTR5Q9H9F9 607 aaPredicted RBP15.58■□□□□ 0.08
CLN3-229ENST00000567963 MLXIPLQ9NP71 852 aa15.58■□□□□ 0.08
CLN3-229ENST00000567963 ACSS2Q9NR19 701 aa15.58■□□□□ 0.08
CLN3-229ENST00000567963 PCMTD2Q9NV79 361 aa15.58■□□□□ 0.08
CLN3-229ENST00000567963 ACTR10Q9NZ32 417 aa15.58■□□□□ 0.08
CLN3-229ENST00000567963 TCFL5Q9UL49 500 aa15.58■□□□□ 0.08
CLN3-229ENST00000567963 PCDHGA9Q9Y5G4 932 aaKnown RBP15.58■□□□□ 0.08
CLN3-229ENST00000567963 MED13Q9UHV7 2174 aa15.57■□□□□ 0.08
CLN3-229ENST00000567963 CCDC78A2IDD5 438 aa15.57■□□□□ 0.08
CLN3-229ENST00000567963 CLEC18AA5D8T8 446 aa15.57■□□□□ 0.08
CLN3-229ENST00000567963 OR51F1A6NGY5 319 aa15.57■□□□□ 0.08
CLN3-229ENST00000567963 ARGFXA6NJG6 315 aa15.57■□□□□ 0.08
CLN3-229ENST00000567963 QSOX1O00391 747 aa15.57■□□□□ 0.08
CLN3-229ENST00000567963 CAPN1P07384 714 aa15.57■□□□□ 0.08
CLN3-229ENST00000567963 PVRP15151 417 aa15.57■□□□□ 0.08
CLN3-229ENST00000567963 CYP2A7P20853 494 aa15.57■□□□□ 0.08
CLN3-229ENST00000567963 ACADLP28330 430 aa15.57■□□□□ 0.08
CLN3-229ENST00000567963 STIP1P31948 543 aaKnown RBP15.57■□□□□ 0.08
CLN3-229ENST00000567963 CCL11P51671 97 aa15.57■□□□□ 0.08
CLN3-229ENST00000567963 SRSF1Q07955 248 aaKnown RBP eCLIP15.57■□□□□ 0.08
CLN3-229ENST00000567963 CHAF1BQ13112 559 aa15.57■□□□□ 0.08
CLN3-229ENST00000567963 ITIH4Q14624 930 aa15.57■□□□□ 0.08
CLN3-229ENST00000567963 SPESP1Q6UW49 350 aa15.57■□□□□ 0.08
CLN3-229ENST00000567963 CLEC18BQ6UXF7 455 aa15.57■□□□□ 0.08
CLN3-229ENST00000567963 PACS1Q6VY07 963 aa15.57■□□□□ 0.08
CLN3-229ENST00000567963 CDHR3Q6ZTQ4 885 aa15.57■□□□□ 0.08
CLN3-229ENST00000567963 SYTL1Q8IYJ3 562 aa15.57■□□□□ 0.08
CLN3-229ENST00000567963 CLEC18CQ8NCF0 446 aa15.57■□□□□ 0.08
CLN3-229ENST00000567963 OR5AR1Q8NGP9 310 aa15.57■□□□□ 0.08
CLN3-229ENST00000567963 SLC25A23Q9BV35 468 aa15.57■□□□□ 0.08
CLN3-229ENST00000567963 SNX7Q9UNH6 387 aa15.57■□□□□ 0.08
CLN3-229ENST00000567963 ICKQ9UPZ9 632 aa15.57■□□□□ 0.08
CLN3-229ENST00000567963 PTPN13Q12923 2485 aa15.57■□□□□ 0.08
CLN3-229ENST00000567963 DOPEY2Q9Y3R5 2298 aa15.57■□□□□ 0.08
CLN3-229ENST00000567963 SEC16AO15027 2179 aa15.56■□□□□ 0.08
CLN3-229ENST00000567963 E7EQ34 232 aa15.56■□□□□ 0.08
CLN3-229ENST00000567963 FTH1P02794 183 aa15.56■□□□□ 0.08
CLN3-229ENST00000567963 FOXN2P32314 431 aa15.56■□□□□ 0.08
CLN3-229ENST00000567963 PTGIRP43119 386 aa15.56■□□□□ 0.08
CLN3-229ENST00000567963 ITGA1P56199 1179 aa15.56■□□□□ 0.08
CLN3-229ENST00000567963 CDH17Q12864 832 aa15.56■□□□□ 0.08
CLN3-229ENST00000567963 BRD3Q15059 726 aa15.56■□□□□ 0.08
CLN3-229ENST00000567963 CCDC38Q502W7 563 aa15.56■□□□□ 0.08
CLN3-229ENST00000567963 FAM69BQ5VUD6 431 aa15.56■□□□□ 0.08
CLN3-229ENST00000567963 PAPD7Q5XG87 772 aaKnown RBP15.56■□□□□ 0.08
CLN3-229ENST00000567963 UNC5AQ6ZN44 842 aa15.56■□□□□ 0.08
CLN3-229ENST00000567963 TBC1D21Q8IYX1 336 aa15.56■□□□□ 0.08
CLN3-229ENST00000567963 TXLNBQ8N3L3 684 aa15.56■□□□□ 0.08
CLN3-229ENST00000567963 OR52K1Q8NGK4 314 aa15.56■□□□□ 0.08
CLN3-229ENST00000567963 ELMO1Q92556 727 aa15.56■□□□□ 0.08
CLN3-229ENST00000567963 DPH2Q9BQC3 489 aaPredicted RBP15.56■□□□□ 0.08
CLN3-229ENST00000567963 SLC7A5P2Q9GIP4 190 aa15.56■□□□□ 0.08
CLN3-229ENST00000567963 ANKMY1Q9P2S6 941 aa15.56■□□□□ 0.08
CLN3-229ENST00000567963 POLG2Q9UHN1 485 aa15.56■□□□□ 0.08
CLN3-229ENST00000567963 ASF1AQ9Y294 204 aa15.56■□□□□ 0.08
CLN3-229ENST00000567963 SLC5A10A0PJK1 596 aa15.55■□□□□ 0.08
CLN3-229ENST00000567963 CCDC162PA2VCL2 907 aa15.55■□□□□ 0.08
CLN3-229ENST00000567963 ERI2A8K979 691 aaKnown RBP15.55■□□□□ 0.08
CLN3-229ENST00000567963 ZNF749O43361 778 aa15.55■□□□□ 0.08
CLN3-229ENST00000567963 TMEM63AO94886 807 aa15.55■□□□□ 0.08
CLN3-229ENST00000567963 TPBGLP0DKB5 382 aa15.55■□□□□ 0.08
CLN3-229ENST00000567963 SHMT2P34897 504 aa15.55■□□□□ 0.08
CLN3-229ENST00000567963 PGDP52209 483 aa15.55■□□□□ 0.08
CLN3-229ENST00000567963 PLOD1Q02809 727 aaPredicted RBP15.55■□□□□ 0.08
CLN3-229ENST00000567963 FAM198BQ6UWH4 519 aa15.55■□□□□ 0.08
CLN3-229ENST00000567963 DNAAF3Q8N9W5 541 aa15.55■□□□□ 0.08
CLN3-229ENST00000567963 OR13J1Q8NGT2 312 aa15.55■□□□□ 0.08
CLN3-229ENST00000567963 ATG4AQ8WYN0 398 aa15.55■□□□□ 0.08
CLN3-229ENST00000567963 TBRG4Q969Z0 631 aaKnown RBP eCLIP15.55■□□□□ 0.08
CLN3-229ENST00000567963 OR2A14Q96R47 310 aa15.55■□□□□ 0.08
CLN3-229ENST00000567963 DESI2Q9BSY9 194 aa15.55■□□□□ 0.08
CLN3-229ENST00000567963 ETNK1Q9HBU6 452 aa15.55■□□□□ 0.08
CLN3-229ENST00000567963 FAM60AQ9NP50 221 aa15.55■□□□□ 0.08
CLN3-229ENST00000567963 BHMG1C9JSJ3 638 aaPredicted RBP15.54■□□□□ 0.08
CLN3-229ENST00000567963 H3BMH7 237 aa15.54■□□□□ 0.08
CLN3-229ENST00000567963 CEACAM4O75871 244 aa15.54■□□□□ 0.08
CLN3-229ENST00000567963 HBQ1P09105 142 aa15.54■□□□□ 0.08
CLN3-229ENST00000567963 OR56A5P0C7T3 313 aa15.54■□□□□ 0.08
CLN3-229ENST00000567963 UGT2B7P16662 529 aa15.54■□□□□ 0.08
CLN3-229ENST00000567963 OASLQ15646 514 aaKnown RBP15.54■□□□□ 0.08
CLN3-229ENST00000567963 PTCHD3Q3KNS1 767 aa15.54■□□□□ 0.08
CLN3-229ENST00000567963 LYPLAL1Q5VWZ2 237 aa15.54■□□□□ 0.08
Retrieved 100 of 20,778 RNA–protein pairs in 100.4 ms