RNA–Protein interactions for RNA: ENST00000558827.1

SMAD3-208, Transcript of SMAD family member 3, humanhuman

TSL 4

Gene SMAD3, Length 552 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMAD3-208ENST00000558827 FAM136AQ96C01 138 aa12.15□□□□□ -0.46
SMAD3-208ENST00000558827 MFSD3Q96ES6 412 aa12.15□□□□□ -0.46
SMAD3-208ENST00000558827 WBP1Q96G27 269 aa12.15□□□□□ -0.46
SMAD3-208ENST00000558827 C19orf43Q9BQ61 176 aa12.15□□□□□ -0.46
SMAD3-208ENST00000558827 KCNF1Q9H3M0 494 aa12.15□□□□□ -0.46
SMAD3-208ENST00000558827 SPHK1Q9NYA1 384 aa12.15□□□□□ -0.46
SMAD3-208ENST00000558827 ACTR10Q9NZ32 417 aa12.15□□□□□ -0.46
SMAD3-208ENST00000558827 BFARQ9NZS9 450 aa12.15□□□□□ -0.46
SMAD3-208ENST00000558827 ANAPC5Q9UJX4 755 aa12.15□□□□□ -0.46
SMAD3-208ENST00000558827 SEC16AO15027 2179 aa12.15□□□□□ -0.47
SMAD3-208ENST00000558827 SLC5A10A0PJK1 596 aa12.14□□□□□ -0.47
SMAD3-208ENST00000558827 KLHL33A6NCF5 533 aa12.14□□□□□ -0.47
SMAD3-208ENST00000558827 KRT87PA6NCN2 255 aa12.14□□□□□ -0.47
SMAD3-208ENST00000558827 GOLGA6L3A6NEY3 463 aa12.14□□□□□ -0.47
SMAD3-208ENST00000558827 LIN7AO14910 233 aaPredicted RBP12.14□□□□□ -0.47
SMAD3-208ENST00000558827 VAPBO95292 243 aa12.14□□□□□ -0.47
SMAD3-208ENST00000558827 ZBTB11O95625 1053 aaPredicted RBP12.14□□□□□ -0.47
SMAD3-208ENST00000558827 FURINP09958 794 aa12.14□□□□□ -0.47
SMAD3-208ENST00000558827 CCNYL3P0C7X3 344 aa12.14□□□□□ -0.47
SMAD3-208ENST00000558827 TCN2P20062 427 aa12.14□□□□□ -0.47
SMAD3-208ENST00000558827 ACADLP28330 430 aa12.14□□□□□ -0.47
SMAD3-208ENST00000558827 CD151P48509 253 aa12.14□□□□□ -0.47
SMAD3-208ENST00000558827 NPY2RP49146 381 aa12.14□□□□□ -0.47
SMAD3-208ENST00000558827 ACY1Q03154 408 aa12.14□□□□□ -0.47
SMAD3-208ENST00000558827 ACVR1Q04771 509 aa12.14□□□□□ -0.47
SMAD3-208ENST00000558827 RPA4Q13156 261 aa12.14□□□□□ -0.47
SMAD3-208ENST00000558827 LAMB3Q13751 1172 aa12.14□□□□□ -0.47
SMAD3-208ENST00000558827 FAM69BQ5VUD6 431 aa12.14□□□□□ -0.47
SMAD3-208ENST00000558827 LYPLAL1Q5VWZ2 237 aa12.14□□□□□ -0.47
SMAD3-208ENST00000558827 PTRHD1Q6GMV3 140 aaKnown RBP12.14□□□□□ -0.47
SMAD3-208ENST00000558827 CASC4Q6P4E1 433 aa12.14□□□□□ -0.47
SMAD3-208ENST00000558827 PACS1Q6VY07 963 aa12.14□□□□□ -0.47
SMAD3-208ENST00000558827 UNC5AQ6ZN44 842 aa12.14□□□□□ -0.47
SMAD3-208ENST00000558827 NLRP9Q7RTR0 991 aa12.14□□□□□ -0.47
SMAD3-208ENST00000558827 PTRH1Q86Y79 214 aaKnown RBP12.14□□□□□ -0.47
SMAD3-208ENST00000558827 TMEM126BQ8IUX1 230 aa12.14□□□□□ -0.47
SMAD3-208ENST00000558827 ADGRF3Q8IZF5 1079 aa12.14□□□□□ -0.47
SMAD3-208ENST00000558827 D2HGDHQ8N465 521 aa12.14□□□□□ -0.47
SMAD3-208ENST00000558827 SLC45A3Q96JT2 553 aa12.14□□□□□ -0.47
SMAD3-208ENST00000558827 IL17FQ96PD4 163 aa12.14□□□□□ -0.47
SMAD3-208ENST00000558827 CD180Q99467 661 aa12.14□□□□□ -0.47
SMAD3-208ENST00000558827 TTC1Q99614 292 aa12.14□□□□□ -0.47
SMAD3-208ENST00000558827 TRIM4Q9C037 500 aa12.14□□□□□ -0.47
SMAD3-208ENST00000558827 TRIT1Q9H3H1 467 aaKnown RBP12.14□□□□□ -0.47
SMAD3-208ENST00000558827 MVB12BQ9H7P6 319 aa12.14□□□□□ -0.47
SMAD3-208ENST00000558827 SEMA5BQ9P283 1151 aa12.14□□□□□ -0.47
SMAD3-208ENST00000558827 POMT2Q9UKY4 750 aa12.14□□□□□ -0.47
SMAD3-208ENST00000558827 PADI1Q9ULC6 663 aa12.14□□□□□ -0.47
SMAD3-208ENST00000558827 RUVBL2Q9Y230 463 aaKnown RBP12.14□□□□□ -0.47
SMAD3-208ENST00000558827 KLHL20Q9Y2M5 609 aa12.14□□□□□ -0.47
SMAD3-208ENST00000558827 SNRNP200O75643 2136 aaKnown RBP12.14□□□□□ -0.47
SMAD3-208ENST00000558827 PIPSLA2A3N6 862 aa12.13□□□□□ -0.47
SMAD3-208ENST00000558827 CDC14CA4D256 554 aa12.13□□□□□ -0.47
SMAD3-208ENST00000558827 TMEM150CB9EJG8 249 aa12.13□□□□□ -0.47
SMAD3-208ENST00000558827 NDUFS3O75489 264 aa12.13□□□□□ -0.47
SMAD3-208ENST00000558827 SCRG1O75711 98 aa12.13□□□□□ -0.47
SMAD3-208ENST00000558827 CTSBP07858 339 aa12.13□□□□□ -0.47
SMAD3-208ENST00000558827 PLA2G2AP14555 144 aa12.13□□□□□ -0.47
SMAD3-208ENST00000558827 FMO4P31512 558 aa12.13□□□□□ -0.47
SMAD3-208ENST00000558827 COILP38432 576 aaPredicted RBP12.13□□□□□ -0.47
SMAD3-208ENST00000558827 EIF3BP55884 814 aaKnown RBP12.13□□□□□ -0.47
SMAD3-208ENST00000558827 CDC20Q12834 499 aa12.13□□□□□ -0.47
SMAD3-208ENST00000558827 DNASE1L3Q13609 305 aa12.13□□□□□ -0.47
SMAD3-208ENST00000558827 DEFB110Q30KQ9 67 aa12.13□□□□□ -0.47
SMAD3-208ENST00000558827 LARP7Q4G0J3 582 aaKnown RBP eCLIP12.13□□□□□ -0.47
SMAD3-208ENST00000558827 TMTC4Q5T4D3 741 aa12.13□□□□□ -0.47
SMAD3-208ENST00000558827 LCN10Q6JVE6 187 aa12.13□□□□□ -0.47
SMAD3-208ENST00000558827 LRRC8BQ6P9F7 803 aa12.13□□□□□ -0.47
SMAD3-208ENST00000558827 BORAQ6PGQ7 559 aa12.13□□□□□ -0.47
SMAD3-208ENST00000558827 PRICKLE2Q7Z3G6 844 aa12.13□□□□□ -0.47
SMAD3-208ENST00000558827 HOOK3Q86VS8 718 aa12.13□□□□□ -0.47
SMAD3-208ENST00000558827 SLC38A9Q8NBW4 561 aa12.13□□□□□ -0.47
SMAD3-208ENST00000558827 OR1L3Q8NH93 324 aa12.13□□□□□ -0.47
SMAD3-208ENST00000558827 UBE2Q2Q8WVN8 375 aa12.13□□□□□ -0.47
SMAD3-208ENST00000558827 MR1Q95460 341 aa12.13□□□□□ -0.47
SMAD3-208ENST00000558827 ZNF501Q96CX3 271 aaPredicted RBP12.13□□□□□ -0.47
SMAD3-208ENST00000558827 PBKQ96KB5 322 aa12.13□□□□□ -0.47
SMAD3-208ENST00000558827 TRAPPC9Q96Q05 1148 aa12.13□□□□□ -0.47
SMAD3-208ENST00000558827 TFB2MQ9H5Q4 396 aaKnown RBP12.13□□□□□ -0.47
SMAD3-208ENST00000558827 LHX9Q9NQ69 397 aa12.13□□□□□ -0.47
SMAD3-208ENST00000558827 ZNF71Q9NQZ8 489 aaPredicted RBP12.13□□□□□ -0.47
SMAD3-208ENST00000558827 EIF2B3Q9NR50 452 aaKnown RBP12.13□□□□□ -0.47
SMAD3-208ENST00000558827 KCND1Q9NSA2 647 aa12.13□□□□□ -0.47
SMAD3-208ENST00000558827 TREX1Q9NSU2 369 aa12.13□□□□□ -0.47
SMAD3-208ENST00000558827 RIMKLBQ9ULI2 386 aa12.13□□□□□ -0.47
SMAD3-208ENST00000558827 ZKSCAN5Q9Y2L8 839 aa12.13□□□□□ -0.47
SMAD3-208ENST00000558827 JRKLQ9Y4A0 524 aa12.13□□□□□ -0.47
SMAD3-208ENST00000558827 USP27XA6NNY8 438 aa12.12□□□□□ -0.47
SMAD3-208ENST00000558827 C2orf74A8MZ97 194 aa12.12□□□□□ -0.47
SMAD3-208ENST00000558827 ISM1B1AKI9 464 aa12.12□□□□□ -0.47
SMAD3-208ENST00000558827 B8ZZF3 427 aa12.12□□□□□ -0.47
SMAD3-208ENST00000558827 HCRTR1O43613 425 aa12.12□□□□□ -0.47
SMAD3-208ENST00000558827 SLC28A2O43868 658 aa12.12□□□□□ -0.47
SMAD3-208ENST00000558827 TMEM63AO94886 807 aa12.12□□□□□ -0.47
SMAD3-208ENST00000558827 ITGB2P05107 769 aa12.12□□□□□ -0.47
SMAD3-208ENST00000558827 CHRM5P08912 532 aaPredicted RBP12.12□□□□□ -0.47
SMAD3-208ENST00000558827 UGT2B7P16662 529 aa12.12□□□□□ -0.47
SMAD3-208ENST00000558827 ARNTP27540 789 aa12.12□□□□□ -0.47
SMAD3-208ENST00000558827 CCR10P46092 362 aa12.12□□□□□ -0.47
SMAD3-208ENST00000558827 POLE2P56282 527 aa12.12□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 25.7 ms