RNA–Protein interactions for RNA: ENST00000556486.5

SCFD1-220, Transcript of sec1 family domain containing 1, humanhuman

TSL 2

Gene SCFD1, Length 974 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-220ENST00000556486 SPATA16Q9BXB7 569 aa9.78□□□□□ -0.84
SCFD1-220ENST00000556486 TRABDQ9H4I3 376 aa9.78□□□□□ -0.84
SCFD1-220ENST00000556486 MLXIPLQ9NP71 852 aa9.78□□□□□ -0.84
SCFD1-220ENST00000556486 TMPRSS11EQ9UL52 423 aa9.78□□□□□ -0.84
SCFD1-220ENST00000556486 ZNF711Q9Y462 761 aa9.78□□□□□ -0.84
SCFD1-220ENST00000556486 AKAP9Q99996 3911 aa9.78□□□□□ -0.84
SCFD1-220ENST00000556486 DCHS2Q6V1P9 2916 aa9.77□□□□□ -0.84
SCFD1-220ENST00000556486 ANKUB1A6NFN9 424 aa9.77□□□□□ -0.85
SCFD1-220ENST00000556486 DPM1O60762 260 aa9.77□□□□□ -0.85
SCFD1-220ENST00000556486 DNAJA2O60884 412 aa9.77□□□□□ -0.85
SCFD1-220ENST00000556486 CDK14O94921 469 aa9.77□□□□□ -0.85
SCFD1-220ENST00000556486 VIPP01282 170 aa9.77□□□□□ -0.85
SCFD1-220ENST00000556486 ZFXP17010 805 aaPredicted RBP9.77□□□□□ -0.85
SCFD1-220ENST00000556486 NELFEP18615 380 aaKnown RBP9.77□□□□□ -0.85
SCFD1-220ENST00000556486 GJC1P36383 396 aa9.77□□□□□ -0.85
SCFD1-220ENST00000556486 ARHGAP25P42331 645 aa9.77□□□□□ -0.85
SCFD1-220ENST00000556486 NR2C2P49116 596 aa9.77□□□□□ -0.85
SCFD1-220ENST00000556486 TAZQ16635 292 aa9.77□□□□□ -0.85
SCFD1-220ENST00000556486 KYNUQ16719 465 aa9.77□□□□□ -0.85
SCFD1-220ENST00000556486 INSCQ1MX18 579 aa9.77□□□□□ -0.85
SCFD1-220ENST00000556486 KHDC1Q4VXA5 237 aaKnown RBP9.77□□□□□ -0.85
SCFD1-220ENST00000556486 TEX44Q53QW1 395 aa9.77□□□□□ -0.85
SCFD1-220ENST00000556486 ZDHHC20Q5W0Z9 365 aa9.77□□□□□ -0.85
SCFD1-220ENST00000556486 LUZP1Q86V48 1076 aa9.77□□□□□ -0.85
SCFD1-220ENST00000556486 PPP1R3BQ86XI6 285 aa9.77□□□□□ -0.85
SCFD1-220ENST00000556486 MCEMP1Q8IX19 187 aa9.77□□□□□ -0.85
SCFD1-220ENST00000556486 ZDHHC12Q96GR4 267 aa9.77□□□□□ -0.85
SCFD1-220ENST00000556486 SLC41A2Q96JW4 573 aa9.77□□□□□ -0.85
SCFD1-220ENST00000556486 TEKT5Q96M29 485 aa9.77□□□□□ -0.85
SCFD1-220ENST00000556486 PACSIN1Q9BY11 444 aa9.77□□□□□ -0.85
SCFD1-220ENST00000556486 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP9.77□□□□□ -0.85
SCFD1-220ENST00000556486 TRIM10Q9UDY6 481 aa9.77□□□□□ -0.85
SCFD1-220ENST00000556486 SHOC2Q9UQ13 582 aa9.77□□□□□ -0.85
SCFD1-220ENST00000556486 DNAJC16Q9Y2G8 782 aa9.77□□□□□ -0.85
SCFD1-220ENST00000556486 ZNF451Q9Y4E5 1061 aa9.77□□□□□ -0.85
SCFD1-220ENST00000556486 PCDHGA9Q9Y5G4 932 aaKnown RBP9.77□□□□□ -0.85
SCFD1-220ENST00000556486 HEY1Q9Y5J3 304 aa9.77□□□□□ -0.85
SCFD1-220ENST00000556486 HIVEP1P15822 2718 aa9.77□□□□□ -0.85
SCFD1-220ENST00000556486 ZFHX3Q15911 3703 aa9.77□□□□□ -0.85
SCFD1-220ENST00000556486 LOC285095A0A1B0GVY8 99 aa9.76□□□□□ -0.85
SCFD1-220ENST00000556486 LRRD1A4D1F6 860 aa9.76□□□□□ -0.85
SCFD1-220ENST00000556486 PDZK1P1A8MUH7 402 aa9.76□□□□□ -0.85
SCFD1-220ENST00000556486 C21orf140B9A014 251 aa9.76□□□□□ -0.85
SCFD1-220ENST00000556486 MASP2O00187 686 aa9.76□□□□□ -0.85
SCFD1-220ENST00000556486 APOL1O14791 398 aa9.76□□□□□ -0.85
SCFD1-220ENST00000556486 MT-ND3P03897 115 aa9.76□□□□□ -0.85
SCFD1-220ENST00000556486 SNRPB2P08579 225 aaKnown RBP9.76□□□□□ -0.85
SCFD1-220ENST00000556486 EBLN1P0CF75 366 aa9.76□□□□□ -0.85
SCFD1-220ENST00000556486 BMP4P12644 408 aa9.76□□□□□ -0.85
SCFD1-220ENST00000556486 FOLR1P15328 257 aa9.76□□□□□ -0.85
SCFD1-220ENST00000556486 VCLP18206 1134 aa9.76□□□□□ -0.85
SCFD1-220ENST00000556486 IDSP22304 550 aa9.76□□□□□ -0.85
SCFD1-220ENST00000556486 PTPN4P29074 926 aa9.76□□□□□ -0.85
SCFD1-220ENST00000556486 ADH7P40394 386 aa9.76□□□□□ -0.85
SCFD1-220ENST00000556486 AP1B1Q10567 949 aa9.76□□□□□ -0.85
SCFD1-220ENST00000556486 TMEM115Q12893 351 aaPredicted RBP9.76□□□□□ -0.85
SCFD1-220ENST00000556486 TUBB3Q13509 450 aa9.76□□□□□ -0.85
SCFD1-220ENST00000556486 GPR18Q14330 331 aa9.76□□□□□ -0.85
SCFD1-220ENST00000556486 PRKD1Q15139 912 aaPredicted RBP9.76□□□□□ -0.85
SCFD1-220ENST00000556486 ATP13A5Q4VNC0 1218 aa9.76□□□□□ -0.85
SCFD1-220ENST00000556486 ZRANB3Q5FWF4 1079 aa9.76□□□□□ -0.85
SCFD1-220ENST00000556486 PAPD7Q5XG87 772 aaKnown RBP9.76□□□□□ -0.85
SCFD1-220ENST00000556486 ALS2CLQ60I27 953 aa9.76□□□□□ -0.85
SCFD1-220ENST00000556486 LCN10Q6JVE6 187 aa9.76□□□□□ -0.85
SCFD1-220ENST00000556486 CRTC3Q6UUV7 619 aa9.76□□□□□ -0.85
SCFD1-220ENST00000556486 TRIM48Q8IWZ4 208 aa9.76□□□□□ -0.85
SCFD1-220ENST00000556486 BRSK1Q8TDC3 778 aa9.76□□□□□ -0.85
SCFD1-220ENST00000556486 TRAF3IP1Q8TDR0 691 aaPredicted RBP9.76□□□□□ -0.85
SCFD1-220ENST00000556486 SEC14L1Q92503 715 aa9.76□□□□□ -0.85
SCFD1-220ENST00000556486 MR1Q95460 341 aa9.76□□□□□ -0.85
SCFD1-220ENST00000556486 PNPLA2Q96AD5 504 aa9.76□□□□□ -0.85
SCFD1-220ENST00000556486 AGAP3Q96P47 875 aa9.76□□□□□ -0.85
SCFD1-220ENST00000556486 GPR63Q9BZJ6 419 aa9.76□□□□□ -0.85
SCFD1-220ENST00000556486 GLOD4Q9HC38 313 aa9.76□□□□□ -0.85
SCFD1-220ENST00000556486 IL26Q9NPH9 171 aa9.76□□□□□ -0.85
SCFD1-220ENST00000556486 SMOXQ9NWM0 555 aa9.76□□□□□ -0.85
SCFD1-220ENST00000556486 NTNG1Q9Y2I2 539 aa9.76□□□□□ -0.85
SCFD1-220ENST00000556486 SPO11Q9Y5K1 396 aa9.76□□□□□ -0.85
SCFD1-220ENST00000556486 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP9.76□□□□□ -0.853e-6■□□□□ 10.3
SCFD1-220ENST00000556486 DIDO1Q9BTC0 2240 aaKnown RBP9.76□□□□□ -0.85
SCFD1-220ENST00000556486 MDC1Q14676 2089 aaKnown RBP9.75□□□□□ -0.85
SCFD1-220ENST00000556486 A0A0A6YYK5 440 aaPredicted RBP9.75□□□□□ -0.85
SCFD1-220ENST00000556486 IGHV5-51A0A0C4DH38 117 aa9.75□□□□□ -0.85
SCFD1-220ENST00000556486 KLHL33A6NCF5 533 aa9.75□□□□□ -0.85
SCFD1-220ENST00000556486 OR52A4PA6NMU1 304 aa9.75□□□□□ -0.85
SCFD1-220ENST00000556486 AURKAO14965 403 aa9.75□□□□□ -0.85
SCFD1-220ENST00000556486 LRRTM2O43300 516 aa9.75□□□□□ -0.85
SCFD1-220ENST00000556486 HNRNPRO43390 633 aaKnown RBP9.75□□□□□ -0.85
SCFD1-220ENST00000556486 EIF4EBP3O60516 100 aaPredicted RBP9.75□□□□□ -0.85
SCFD1-220ENST00000556486 ZG16O60844 167 aa9.75□□□□□ -0.85
SCFD1-220ENST00000556486 DIAPH2O60879 1101 aa9.75□□□□□ -0.85
SCFD1-220ENST00000556486 MT-CYBP00156 380 aaPredicted RBP9.75□□□□□ -0.85
SCFD1-220ENST00000556486 PIRTP0C851 137 aa9.75□□□□□ -0.85
SCFD1-220ENST00000556486 RPL10P27635 214 aaKnown RBP9.75□□□□□ -0.85
SCFD1-220ENST00000556486 CDC25BP30305 580 aa9.75□□□□□ -0.85
SCFD1-220ENST00000556486 SLC1A1P43005 524 aa9.75□□□□□ -0.85
SCFD1-220ENST00000556486 ITGA1P56199 1179 aa9.75□□□□□ -0.85
SCFD1-220ENST00000556486 RPS15P62841 145 aaKnown RBP9.75□□□□□ -0.85
SCFD1-220ENST00000556486 SLC7A5Q01650 507 aa9.75□□□□□ -0.85
SCFD1-220ENST00000556486 LAMB3Q13751 1172 aa9.75□□□□□ -0.85
Retrieved 100 of 20,778 RNA–protein pairs in 27.5 ms