RNA–Protein interactions for RNA: ENST00000545308.5

SNHG1-222, Transcript of small nucleolar RNA host gene 1, human

TSL 2

Gene SNHG1, Length 646 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SNHG1-222	ENST00000545308	ACVR1C	Q8NER5	493 aa		3.99	□□□□□ -1.77
SNHG1-222	ENST00000545308	MOSPD2	Q8NHP6	518 aa		3.99	□□□□□ -1.77
SNHG1-222	ENST00000545308	MGARP	Q8TDB4	240 aa		3.99	□□□□□ -1.77
SNHG1-222	ENST00000545308	GRK7	Q8WTQ7	553 aa		3.99	□□□□□ -1.77
SNHG1-222	ENST00000545308	LRFN5	Q96NI6	719 aa		3.99	□□□□□ -1.77
SNHG1-222	ENST00000545308	LRRC3B	Q96PB8	259 aa		3.99	□□□□□ -1.77
SNHG1-222	ENST00000545308	MS4A10	Q96PG2	267 aa		3.99	□□□□□ -1.77
SNHG1-222	ENST00000545308	PCYT2	Q99447	389 aa		3.99	□□□□□ -1.77
SNHG1-222	ENST00000545308	SEMA3C	Q99985	751 aa		3.99	□□□□□ -1.77
SNHG1-222	ENST00000545308	C16orf70	Q9BSU1	422 aa		3.99	□□□□□ -1.77
SNHG1-222	ENST00000545308	FUT8	Q9BYC5	575 aa		3.99	□□□□□ -1.77
SNHG1-222	ENST00000545308	FZD8	Q9H461	694 aa		3.99	□□□□□ -1.77
SNHG1-222	ENST00000545308	FZD3	Q9NPG1	666 aa		3.99	□□□□□ -1.77
SNHG1-222	ENST00000545308	SLC24A2	Q9UI40	661 aa		3.99	□□□□□ -1.77
SNHG1-222	ENST00000545308	COL18A1	P39060	1754 aa		3.99	□□□□□ -1.77
SNHG1-222	ENST00000545308	SBF1	O95248	1867 aa		3.98	□□□□□ -1.77
SNHG1-222	ENST00000545308	CCDC88A	Q3V6T2	1871 aa		3.98	□□□□□ -1.77
SNHG1-222	ENST00000545308	LY75	O60449	1722 aa		3.98	□□□□□ -1.77
SNHG1-222	ENST00000545308	ZNF521	Q96K83	1311 aa		3.98	□□□□□ -1.77
SNHG1-222	ENST00000545308	ARFGEF1	Q9Y6D6	1849 aa		3.98	□□□□□ -1.77
SNHG1-222	ENST00000545308	TNS2	Q63HR2	1409 aa		3.98	□□□□□ -1.77
SNHG1-222	ENST00000545308	C10orf71	Q711Q0	1435 aa		3.98	□□□□□ -1.77
SNHG1-222	ENST00000545308		A0A087WV48	116 aa		3.98	□□□□□ -1.77
SNHG1-222	ENST00000545308	BICDL2	A1A5D9	508 aa		3.98	□□□□□ -1.77
SNHG1-222	ENST00000545308	HTR3E	A5X5Y0	456 aa		3.98	□□□□□ -1.77
SNHG1-222	ENST00000545308	ANKRD28	O15084	1053 aa		3.98	□□□□□ -1.77
SNHG1-222	ENST00000545308	KCNN4	O15554	427 aa		3.98	□□□□□ -1.77
SNHG1-222	ENST00000545308	BAG2	O95816	211 aa		3.98	□□□□□ -1.77
SNHG1-222	ENST00000545308	FAM58BP	P0C7Q3	252 aa		3.98	□□□□□ -1.77
SNHG1-222	ENST00000545308	DANCR	P0C864	163 aa		3.98	□□□□□ -1.77
SNHG1-222	ENST00000545308	NAGA	P17050	411 aa		3.98	□□□□□ -1.77
SNHG1-222	ENST00000545308	TNFRSF1B	P20333	461 aa		3.98	□□□□□ -1.77
SNHG1-222	ENST00000545308	CAST	P20810	708 aa	Known RBP	3.98	□□□□□ -1.77
SNHG1-222	ENST00000545308	PTMS	P20962	102 aa		3.98	□□□□□ -1.77
SNHG1-222	ENST00000545308	AZGP1	P25311	298 aa	Known RBP	3.98	□□□□□ -1.77
SNHG1-222	ENST00000545308	TKT	P29401	623 aa	Known RBP	3.98	□□□□□ -1.77
SNHG1-222	ENST00000545308	STX2	P32856	288 aa		3.98	□□□□□ -1.77
SNHG1-222	ENST00000545308	HNF4A	P41235	474 aa		3.98	□□□□□ -1.77
SNHG1-222	ENST00000545308	FASLG	P48023	281 aa		3.98	□□□□□ -1.77
SNHG1-222	ENST00000545308	LIMK1	P53667	647 aa		3.98	□□□□□ -1.77
SNHG1-222	ENST00000545308	MAP2K1	Q02750	393 aa	Predicted RBP	3.98	□□□□□ -1.77
SNHG1-222	ENST00000545308	TROAP	Q12815	778 aa		3.98	□□□□□ -1.77
SNHG1-222	ENST00000545308	MEP1B	Q16820	701 aa		3.98	□□□□□ -1.77
SNHG1-222	ENST00000545308	KRTCAP3	Q53RY4	240 aa		3.98	□□□□□ -1.77
SNHG1-222	ENST00000545308	C6orf136	Q5SQH8	315 aa		3.98	□□□□□ -1.77
SNHG1-222	ENST00000545308	KCTD18	Q6PI47	426 aa	Predicted RBP	3.98	□□□□□ -1.77
SNHG1-222	ENST00000545308	ZBTB49	Q6ZSB9	765 aa		3.98	□□□□□ -1.77
SNHG1-222	ENST00000545308	DSG4	Q86SJ6	1040 aa		3.98	□□□□□ -1.77
SNHG1-222	ENST00000545308	ZSCAN30	Q86W11	494 aa		3.98	□□□□□ -1.77
SNHG1-222	ENST00000545308	MFN1	Q8IWA4	741 aa		3.98	□□□□□ -1.77
SNHG1-222	ENST00000545308	CHERP	Q8IWX8	916 aa	Known RBP	3.98	□□□□□ -1.77
SNHG1-222	ENST00000545308	MAML2	Q8IZL2	1156 aa	Predicted RBP	3.98	□□□□□ -1.77
SNHG1-222	ENST00000545308	ARL10	Q8N8L6	244 aa		3.98	□□□□□ -1.77
SNHG1-222	ENST00000545308	OR2AJ1	Q8NGZ0	328 aa		3.98	□□□□□ -1.77
SNHG1-222	ENST00000545308	OCC1	Q8TAD7	63 aa		3.98	□□□□□ -1.77
SNHG1-222	ENST00000545308	EXT2	Q93063	718 aa		3.98	□□□□□ -1.77
SNHG1-222	ENST00000545308	SPSB1	Q96BD6	273 aa		3.98	□□□□□ -1.77
SNHG1-222	ENST00000545308	PRMT6	Q96LA8	375 aa	Predicted RBP	3.98	□□□□□ -1.77
SNHG1-222	ENST00000545308	OR6C1	Q96RD1	312 aa		3.98	□□□□□ -1.77
SNHG1-222	ENST00000545308	KXD1	Q9BQD3	176 aa		3.98	□□□□□ -1.77
SNHG1-222	ENST00000545308	FERMT1	Q9BQL6	677 aa		3.98	□□□□□ -1.77
SNHG1-222	ENST00000545308	TRMO	Q9BU70	441 aa		3.98	□□□□□ -1.77
SNHG1-222	ENST00000545308	MMADHC	Q9H3L0	296 aa	Predicted RBP	3.98	□□□□□ -1.77
SNHG1-222	ENST00000545308	CATSPERB	Q9H7T0	1116 aa		3.98	□□□□□ -1.77
SNHG1-222	ENST00000545308	TBC1D17	Q9HA65	648 aa		3.98	□□□□□ -1.77
SNHG1-222	ENST00000545308	C17orf75	Q9HAS0	396 aa		3.98	□□□□□ -1.77
SNHG1-222	ENST00000545308	NOX4	Q9NPH5	578 aa		3.98	□□□□□ -1.77
SNHG1-222	ENST00000545308	KRCC1	Q9NPI7	259 aa	Predicted RBP	3.98	□□□□□ -1.77
SNHG1-222	ENST00000545308	NRIP3	Q9NQ35	241 aa		3.98	□□□□□ -1.77
SNHG1-222	ENST00000545308	TUBA8	Q9NY65	449 aa	Predicted RBP	3.98	□□□□□ -1.77
SNHG1-222	ENST00000545308	KLHL20	Q9Y2M5	609 aa		3.98	□□□□□ -1.77
SNHG1-222	ENST00000545308	PAPPA	Q13219	1627 aa		3.98	□□□□□ -1.77
SNHG1-222	ENST00000545308	EVC2	Q86UK5	1308 aa		3.97	□□□□□ -1.77
SNHG1-222	ENST00000545308	TNRC6C	Q9HCJ0	1690 aa	Known RBP	3.97	□□□□□ -1.77
SNHG1-222	ENST00000545308	PPIP5K1	Q6PFW1	1433 aa		3.97	□□□□□ -1.77
SNHG1-222	ENST00000545308	ABCC6	O95255	1503 aa		3.97	□□□□□ -1.77
SNHG1-222	ENST00000545308		A0A1W2PP11	408 aa		3.97	□□□□□ -1.77
SNHG1-222	ENST00000545308	ANKUB1	A6NFN9	424 aa		3.97	□□□□□ -1.77
SNHG1-222	ENST00000545308	TMEM221	A6NGB7	291 aa		3.97	□□□□□ -1.77
SNHG1-222	ENST00000545308	GLTPD2	A6NH11	291 aa		3.97	□□□□□ -1.77
SNHG1-222	ENST00000545308		H0YGN5	161 aa		3.97	□□□□□ -1.77
SNHG1-222	ENST00000545308	PLK4	O00444	970 aa		3.97	□□□□□ -1.77
SNHG1-222	ENST00000545308	SOCS6	O14544	535 aa		3.97	□□□□□ -1.77
SNHG1-222	ENST00000545308	PTGES	O14684	152 aa		3.97	□□□□□ -1.77
SNHG1-222	ENST00000545308	XRCC3	O43542	346 aa		3.97	□□□□□ -1.77
SNHG1-222	ENST00000545308	SSX4	O60224	188 aa		3.97	□□□□□ -1.77
SNHG1-222	ENST00000545308	ADRA2C	P18825	462 aa		3.97	□□□□□ -1.77
SNHG1-222	ENST00000545308	KCNA5	P22460	613 aa		3.97	□□□□□ -1.77
SNHG1-222	ENST00000545308	TCEA1	P23193	301 aa	Known RBP	3.97	□□□□□ -1.77
SNHG1-222	ENST00000545308	TNFRSF8	P28908	595 aa		3.97	□□□□□ -1.77
SNHG1-222	ENST00000545308	RPL3	P39023	403 aa	Known RBP	3.97	□□□□□ -1.77
SNHG1-222	ENST00000545308	AMPH	P49418	695 aa		3.97	□□□□□ -1.77
SNHG1-222	ENST00000545308	ALDH7A1	P49419	539 aa	Known RBP	3.97	□□□□□ -1.77
SNHG1-222	ENST00000545308	MXI1	P50539	228 aa		3.97	□□□□□ -1.77
SNHG1-222	ENST00000545308	SNRPE	P62304	92 aa	Known RBP	3.97	□□□□□ -1.77
SNHG1-222	ENST00000545308	CDK3	Q00526	305 aa		3.97	□□□□□ -1.77
SNHG1-222	ENST00000545308	SRSF1	Q07955	248 aa	Known RBP eCLIP	3.97	□□□□□ -1.77	5e-12	■■□□□ 12.5
SNHG1-222	ENST00000545308	HSPB3	Q12988	150 aa		3.97	□□□□□ -1.77
SNHG1-222	ENST00000545308	CCDC92	Q53HC0	331 aa	Predicted RBP	3.97	□□□□□ -1.77
SNHG1-222	ENST00000545308	ZDHHC20	Q5W0Z9	365 aa		3.97	□□□□□ -1.77

Retrieved 100 of 20,778 RNA–protein pairs in 35.8 ms