RNA–Protein interactions for RNA: ENST00000533704.1

CAPN1-225, Transcript of calpain 1, human

TSL 3

Gene CAPN1, Length 643 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CAPN1-225	ENST00000533704	FER1L5	A0AVI2	2057 aa		10.13	□□□□□ -0.79
CAPN1-225	ENST00000533704	CDC14C	A4D256	554 aa		10.13	□□□□□ -0.79
CAPN1-225	ENST00000533704	C2orf74	A8MZ97	194 aa		10.13	□□□□□ -0.79
CAPN1-225	ENST00000533704	TMEM150C	B9EJG8	249 aa		10.13	□□□□□ -0.79
CAPN1-225	ENST00000533704		J3QKU1	62 aa		10.13	□□□□□ -0.79
CAPN1-225	ENST00000533704	MATN2	O00339	956 aa		10.13	□□□□□ -0.79
CAPN1-225	ENST00000533704	SCRG1	O75711	98 aa		10.13	□□□□□ -0.79
CAPN1-225	ENST00000533704	ATXN8OS	P0DMR3	200 aa		10.13	□□□□□ -0.79
CAPN1-225	ENST00000533704	ST6GAL1	P15907	406 aa		10.13	□□□□□ -0.79
CAPN1-225	ENST00000533704	PSMA3	P25788	255 aa		10.13	□□□□□ -0.79
CAPN1-225	ENST00000533704	MGAT1	P26572	445 aa		10.13	□□□□□ -0.79
CAPN1-225	ENST00000533704	PRDX3	P30048	256 aa	Known RBP	10.13	□□□□□ -0.79
CAPN1-225	ENST00000533704	PPARG	P37231	505 aa	Predicted RBP	10.13	□□□□□ -0.79
CAPN1-225	ENST00000533704	TUBB4B	P68371	445 aa		10.13	□□□□□ -0.79
CAPN1-225	ENST00000533704	HSPA14	Q0VDF9	509 aa		10.13	□□□□□ -0.79
CAPN1-225	ENST00000533704	KCNAB2	Q13303	367 aa		10.13	□□□□□ -0.79
CAPN1-225	ENST00000533704	TUBB2A	Q13885	445 aa		10.13	□□□□□ -0.79
CAPN1-225	ENST00000533704	PCID2	Q5JVF3	399 aa		10.13	□□□□□ -0.79
CAPN1-225	ENST00000533704	PRAMEF17	Q5VTA0	474 aa		10.13	□□□□□ -0.79
CAPN1-225	ENST00000533704	FAM199X	Q6PEV8	388 aa	Predicted RBP	10.13	□□□□□ -0.79
CAPN1-225	ENST00000533704	DRICH1	Q6PGQ1	229 aa	Predicted RBP	10.13	□□□□□ -0.79
CAPN1-225	ENST00000533704	CES3	Q6UWW8	571 aa		10.13	□□□□□ -0.79
CAPN1-225	ENST00000533704	ZNF662	Q6ZS27	426 aa		10.13	□□□□□ -0.79
CAPN1-225	ENST00000533704	ZNF534	Q76KX8	674 aa		10.13	□□□□□ -0.79
CAPN1-225	ENST00000533704	TRIM73	Q86UV7	250 aa		10.13	□□□□□ -0.79
CAPN1-225	ENST00000533704	PTRH1	Q86Y79	214 aa	Known RBP	10.13	□□□□□ -0.79
CAPN1-225	ENST00000533704	CFAP61	Q8NHU2	1237 aa		10.13	□□□□□ -0.79
CAPN1-225	ENST00000533704	LKAAEAR1	Q8TD35	194 aa		10.13	□□□□□ -0.79
CAPN1-225	ENST00000533704	MR1	Q95460	341 aa		10.13	□□□□□ -0.79
CAPN1-225	ENST00000533704	RUFY1	Q96T51	708 aa		10.13	□□□□□ -0.79
CAPN1-225	ENST00000533704	TUBB2B	Q9BVA1	445 aa		10.13	□□□□□ -0.79
CAPN1-225	ENST00000533704	TRIM4	Q9C037	500 aa		10.13	□□□□□ -0.79
CAPN1-225	ENST00000533704	TWSG1	Q9GZX9	223 aa		10.13	□□□□□ -0.79
CAPN1-225	ENST00000533704	TFB2M	Q9H5Q4	396 aa	Known RBP	10.13	□□□□□ -0.79
CAPN1-225	ENST00000533704	LHX9	Q9NQ69	397 aa		10.13	□□□□□ -0.79
CAPN1-225	ENST00000533704	EIF2B3	Q9NR50	452 aa	Known RBP	10.13	□□□□□ -0.79
CAPN1-225	ENST00000533704	C1GALT1	Q9NS00	363 aa		10.13	□□□□□ -0.79
CAPN1-225	ENST00000533704	KCND1	Q9NSA2	647 aa		10.13	□□□□□ -0.79
CAPN1-225	ENST00000533704	GEMIN8	Q9NWZ8	242 aa	Known RBP	10.13	□□□□□ -0.79
CAPN1-225	ENST00000533704	ACTR10	Q9NZ32	417 aa		10.13	□□□□□ -0.79
CAPN1-225	ENST00000533704	BFAR	Q9NZS9	450 aa		10.13	□□□□□ -0.79
CAPN1-225	ENST00000533704	MARCH4	Q9P2E8	410 aa	Predicted RBP	10.13	□□□□□ -0.79
CAPN1-225	ENST00000533704	KCND3	Q9UK17	655 aa		10.13	□□□□□ -0.79
CAPN1-225	ENST00000533704	RIMKLB	Q9ULI2	386 aa		10.13	□□□□□ -0.79
CAPN1-225	ENST00000533704	ICK	Q9UPZ9	632 aa		10.13	□□□□□ -0.79
CAPN1-225	ENST00000533704	ZKSCAN5	Q9Y2L8	839 aa		10.13	□□□□□ -0.79
CAPN1-225	ENST00000533704	MED13	Q9UHV7	2174 aa		10.13	□□□□□ -0.79
CAPN1-225	ENST00000533704	ANKRD12	Q6UB98	2062 aa		10.12	□□□□□ -0.79
CAPN1-225	ENST00000533704	SLC5A10	A0PJK1	596 aa		10.12	□□□□□ -0.79
CAPN1-225	ENST00000533704	PIPSL	A2A3N6	862 aa		10.12	□□□□□ -0.79
CAPN1-225	ENST00000533704	IQCF5	A8MTL0	148 aa		10.12	□□□□□ -0.79
CAPN1-225	ENST00000533704	CD3EAP	O15446	510 aa	Known RBP	10.12	□□□□□ -0.79
CAPN1-225	ENST00000533704	CPNE3	O75131	537 aa	Known RBP	10.12	□□□□□ -0.79
CAPN1-225	ENST00000533704	NMBR	P28336	390 aa		10.12	□□□□□ -0.79
CAPN1-225	ENST00000533704	SHMT2	P34897	504 aa		10.12	□□□□□ -0.79
CAPN1-225	ENST00000533704	NPY2R	P49146	381 aa		10.12	□□□□□ -0.79
CAPN1-225	ENST00000533704	RPS18	P62269	152 aa	Known RBP	10.12	□□□□□ -0.79
CAPN1-225	ENST00000533704	ACVR1	Q04771	509 aa		10.12	□□□□□ -0.79
CAPN1-225	ENST00000533704	ABR	Q12979	859 aa		10.12	□□□□□ -0.79
CAPN1-225	ENST00000533704	AARS2	Q5JTZ9	985 aa	Known RBP	10.12	□□□□□ -0.79
CAPN1-225	ENST00000533704	PTRHD1	Q6GMV3	140 aa	Known RBP	10.12	□□□□□ -0.79
CAPN1-225	ENST00000533704	C4orf22	Q6V702	233 aa		10.12	□□□□□ -0.79
CAPN1-225	ENST00000533704	BPHL	Q86WA6	291 aa	Predicted RBP	10.12	□□□□□ -0.79
CAPN1-225	ENST00000533704	ADGRF3	Q8IZF5	1079 aa		10.12	□□□□□ -0.79
CAPN1-225	ENST00000533704	KRT222	Q8N1A0	295 aa		10.12	□□□□□ -0.79
CAPN1-225	ENST00000533704	PRELID2	Q8N945	189 aa		10.12	□□□□□ -0.79
CAPN1-225	ENST00000533704	N4BP2L2	Q92802	583 aa	Predicted RBP	10.12	□□□□□ -0.79
CAPN1-225	ENST00000533704	ZNF501	Q96CX3	271 aa	Predicted RBP	10.12	□□□□□ -0.79
CAPN1-225	ENST00000533704	CLIP3	Q96DZ5	547 aa		10.12	□□□□□ -0.79
CAPN1-225	ENST00000533704	FCRL4	Q96PJ5	515 aa		10.12	□□□□□ -0.79
CAPN1-225	ENST00000533704	TSSK1B	Q9BXA7	367 aa		10.12	□□□□□ -0.79
CAPN1-225	ENST00000533704	SLC7A5P2	Q9GIP4	190 aa		10.12	□□□□□ -0.79
CAPN1-225	ENST00000533704	SLC25A18	Q9H1K4	315 aa		10.12	□□□□□ -0.79
CAPN1-225	ENST00000533704	ADNP	Q9H2P0	1102 aa		10.12	□□□□□ -0.79
CAPN1-225	ENST00000533704	AKIRIN1	Q9H9L7	192 aa	Predicted RBP	10.12	□□□□□ -0.79
CAPN1-225	ENST00000533704	ZNF71	Q9NQZ8	489 aa	Predicted RBP	10.12	□□□□□ -0.79
CAPN1-225	ENST00000533704	HOMER3	Q9NSC5	361 aa		10.12	□□□□□ -0.79
CAPN1-225	ENST00000533704	STARD5	Q9NSY2	213 aa		10.12	□□□□□ -0.79
CAPN1-225	ENST00000533704	SYBU	Q9NX95	663 aa		10.12	□□□□□ -0.79
CAPN1-225	ENST00000533704	CIDEB	Q9UHD4	219 aa		10.12	□□□□□ -0.79
CAPN1-225	ENST00000533704	TSR3	Q9UJK0	312 aa	Known RBP	10.12	□□□□□ -0.79
CAPN1-225	ENST00000533704	BTRC	Q9Y297	605 aa		10.12	□□□□□ -0.79
CAPN1-225	ENST00000533704	TCRBV7S3A2	A0A539	114 aa		10.11	□□□□□ -0.79
CAPN1-225	ENST00000533704	GOLGA6L3	A6NEY3	463 aa		10.11	□□□□□ -0.79
CAPN1-225	ENST00000533704	ISM1	B1AKI9	464 aa		10.11	□□□□□ -0.79
CAPN1-225	ENST00000533704	BHMG1	C9JSJ3	638 aa	Predicted RBP	10.11	□□□□□ -0.79
CAPN1-225	ENST00000533704	GOLGA8K	D6RF30	607 aa		10.11	□□□□□ -0.79
CAPN1-225	ENST00000533704	GOLGA8T	H3BQL2	631 aa		10.11	□□□□□ -0.79
CAPN1-225	ENST00000533704	NDUFS3	O75489	264 aa		10.11	□□□□□ -0.79
CAPN1-225	ENST00000533704	CREG1	O75629	220 aa		10.11	□□□□□ -0.79
CAPN1-225	ENST00000533704	VAPB	O95292	243 aa		10.11	□□□□□ -0.79
CAPN1-225	ENST00000533704	KRT14	P02533	472 aa		10.11	□□□□□ -0.79
CAPN1-225	ENST00000533704	APOA4	P06727	396 aa		10.11	□□□□□ -0.79
CAPN1-225	ENST00000533704	KLK3	P07288	261 aa	Predicted RBP	10.11	□□□□□ -0.79
CAPN1-225	ENST00000533704	FURIN	P09958	794 aa		10.11	□□□□□ -0.79
CAPN1-225	ENST00000533704	UGT2B7	P16662	529 aa		10.11	□□□□□ -0.79
CAPN1-225	ENST00000533704	CYP2A7	P20853	494 aa		10.11	□□□□□ -0.79
CAPN1-225	ENST00000533704	ACADL	P28330	430 aa		10.11	□□□□□ -0.79
CAPN1-225	ENST00000533704	CCR7	P32248	378 aa		10.11	□□□□□ -0.79
CAPN1-225	ENST00000533704	TTPA	P49638	278 aa		10.11	□□□□□ -0.79

Retrieved 100 of 20,778 RNA–protein pairs in 89.3 ms