RNA–Protein interactions for RNA: ENST00000528142.5

VPS28-209, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 3

Gene VPS28, Length 1,821 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-209ENST00000528142 MCOLN3Q8TDD5 553 aa20.24■□□□□ 0.83
VPS28-209ENST00000528142 AIG1Q9NVV5 245 aa20.24■□□□□ 0.83
VPS28-209ENST00000528142 GULP1Q9UBP9 304 aa20.24■□□□□ 0.83
VPS28-209ENST00000528142 TRPS1Q9UHF7 1281 aa20.24■□□□□ 0.83
VPS28-209ENST00000528142 PRUNE2Q8WUY3 3088 aa20.23■□□□□ 0.83
VPS28-209ENST00000528142 LOC730098B7Z3J9 87 aa20.23■□□□□ 0.83
VPS28-209ENST00000528142 ANHXE9PGG2 379 aa20.23■□□□□ 0.83
VPS28-209ENST00000528142 NPC1O15118 1278 aa20.23■□□□□ 0.83
VPS28-209ENST00000528142 MID1O15344 667 aa20.23■□□□□ 0.83
VPS28-209ENST00000528142 PSIP1O75475 530 aaKnown RBP20.23■□□□□ 0.83
VPS28-209ENST00000528142 TAS2R38P59533 333 aa20.23■□□□□ 0.83
VPS28-209ENST00000528142 GRIK2Q13002 908 aa20.23■□□□□ 0.83
VPS28-209ENST00000528142 HTR4Q13639 388 aa20.23■□□□□ 0.83
VPS28-209ENST00000528142 CST6Q15828 149 aa20.23■□□□□ 0.83
VPS28-209ENST00000528142 C6orf136Q5SQH8 315 aa20.23■□□□□ 0.83
VPS28-209ENST00000528142 LRRC70Q7Z2Q7 622 aa20.23■□□□□ 0.83
VPS28-209ENST00000528142 MYLK4Q86YV6 388 aaPredicted RBP20.23■□□□□ 0.83
VPS28-209ENST00000528142 TMEM159Q96B96 161 aa20.23■□□□□ 0.83
VPS28-209ENST00000528142 CDRT15Q96T59 188 aa20.23■□□□□ 0.83
VPS28-209ENST00000528142 TRIM39Q9HCM9 518 aa20.23■□□□□ 0.83
VPS28-209ENST00000528142 POMPQ9Y244 141 aa20.23■□□□□ 0.83
VPS28-209ENST00000528142 CCL27Q9Y4X3 112 aa20.23■□□□□ 0.83
VPS28-209ENST00000528142 NRP2O60462 931 aa20.23■□□□□ 0.83
VPS28-209ENST00000528142 HMOX2P30519 316 aa20.23■□□□□ 0.83
VPS28-209ENST00000528142 PREPP48147 710 aa20.23■□□□□ 0.83
VPS28-209ENST00000528142 ERVK-8P63133 956 aa20.23■□□□□ 0.83
VPS28-209ENST00000528142 ABRAXAS2Q15018 415 aa20.23■□□□□ 0.83
VPS28-209ENST00000528142 E2F5Q15329 346 aa20.23■□□□□ 0.83
VPS28-209ENST00000528142 SYTL3Q4VX76 610 aa20.23■□□□□ 0.83
VPS28-209ENST00000528142 PIGGQ5H8A4 983 aa20.23■□□□□ 0.83
VPS28-209ENST00000528142 AGBL4Q5VU57 503 aa20.23■□□□□ 0.83
VPS28-209ENST00000528142 BNC2Q6ZN30 1099 aaPredicted RBP20.23■□□□□ 0.83
VPS28-209ENST00000528142 SMRP1Q8NCR6 262 aa20.23■□□□□ 0.83
VPS28-209ENST00000528142 BRINP2Q9C0B6 783 aa20.23■□□□□ 0.83
VPS28-209ENST00000528142 ZCCHC2Q9C0B9 1178 aaKnown RBP20.23■□□□□ 0.83
VPS28-209ENST00000528142 FAM8A1Q9UBU6 413 aa20.23■□□□□ 0.83
VPS28-209ENST00000528142 RNF11Q9Y3C5 154 aa20.23■□□□□ 0.83
VPS28-209ENST00000528142 ANKRD12Q6UB98 2062 aa20.22■□□□□ 0.83
VPS28-209ENST00000528142 ARHGEF33A8MVX0 844 aa20.22■□□□□ 0.83
VPS28-209ENST00000528142 AP1G1O43747 822 aa20.22■□□□□ 0.83
VPS28-209ENST00000528142 NME5P56597 212 aa20.22■□□□□ 0.83
VPS28-209ENST00000528142 ABRQ12979 859 aa20.22■□□□□ 0.83
VPS28-209ENST00000528142 RCN1Q15293 331 aa20.22■□□□□ 0.83
VPS28-209ENST00000528142 PTCHD3Q3KNS1 767 aa20.22■□□□□ 0.83
VPS28-209ENST00000528142 SLC22A15Q8IZD6 547 aa20.22■□□□□ 0.83
VPS28-209ENST00000528142 STMN2Q93045 179 aa20.22■□□□□ 0.83
VPS28-209ENST00000528142 FBXL8Q96CD0 374 aa20.22■□□□□ 0.83
VPS28-209ENST00000528142 SERPINI1Q99574 410 aa20.22■□□□□ 0.83
VPS28-209ENST00000528142 OR2AG1Q9H205 316 aa20.22■□□□□ 0.83
VPS28-209ENST00000528142 SLC52A3Q9NQ40 469 aa20.22■□□□□ 0.83
VPS28-209ENST00000528142 ATXN10Q9UBB4 475 aa20.22■□□□□ 0.83
VPS28-209ENST00000528142 PCDHGA7Q9Y5G6 932 aa20.22■□□□□ 0.83
VPS28-209ENST00000528142 LSM1O15116 133 aaKnown RBP20.21■□□□□ 0.83
VPS28-209ENST00000528142 WDR47O94967 919 aa20.21■□□□□ 0.83
VPS28-209ENST00000528142 ZNF423Q2M1K9 1284 aa20.21■□□□□ 0.83
VPS28-209ENST00000528142 MMEL1Q495T6 779 aa20.21■□□□□ 0.83
VPS28-209ENST00000528142 ATP6AP1LQ52LC2 224 aa20.21■□□□□ 0.83
VPS28-209ENST00000528142 EEF1AKMT2Q5JPI9 291 aaKnown RBP20.21■□□□□ 0.83
VPS28-209ENST00000528142 NEK5Q6P3R8 708 aa20.21■□□□□ 0.83
VPS28-209ENST00000528142 XKR5Q6UX68 686 aa20.21■□□□□ 0.83
VPS28-209ENST00000528142 HACD2Q6Y1H2 254 aa20.21■□□□□ 0.83
VPS28-209ENST00000528142 CCDC124Q96CT7 223 aaKnown RBP20.21■□□□□ 0.83
VPS28-209ENST00000528142 EBF2Q9HAK2 575 aa20.21■□□□□ 0.83
VPS28-209ENST00000528142 KRT87PA6NCN2 255 aa20.2■□□□□ 0.82
VPS28-209ENST00000528142 BBIP1A8MTZ0 92 aa20.2■□□□□ 0.82
VPS28-209ENST00000528142 H3BQ06 376 aaPredicted RBP20.2■□□□□ 0.82
VPS28-209ENST00000528142 MRASO14807 208 aa20.2■□□□□ 0.82
VPS28-209ENST00000528142 CFLARO15519 480 aa20.2■□□□□ 0.82
VPS28-209ENST00000528142 C5AR1P21730 350 aa20.2■□□□□ 0.82
VPS28-209ENST00000528142 PDHA2P29803 388 aa20.2■□□□□ 0.82
VPS28-209ENST00000528142 TIE1P35590 1138 aa20.2■□□□□ 0.82
VPS28-209ENST00000528142 SEC13P55735 322 aa20.2■□□□□ 0.82
VPS28-209ENST00000528142 CEACAM7Q14002 265 aa20.2■□□□□ 0.82
VPS28-209ENST00000528142 CCNIQ14094 377 aa20.2■□□□□ 0.82
VPS28-209ENST00000528142 RPS6KA2Q15349 733 aa20.2■□□□□ 0.82
VPS28-209ENST00000528142 C8orf82Q6P1X6 216 aaPredicted RBP20.2■□□□□ 0.82
VPS28-209ENST00000528142 ZNF547Q8IVP9 402 aa20.2■□□□□ 0.82
VPS28-209ENST00000528142 PLA2G15Q8NCC3 412 aa20.2■□□□□ 0.82
VPS28-209ENST00000528142 CSGALNACT1Q8TDX6 532 aa20.2■□□□□ 0.82
VPS28-209ENST00000528142 LINC00615Q96LM1 132 aaPredicted RBP20.2■□□□□ 0.82
VPS28-209ENST00000528142 HBEGFQ99075 208 aa20.2■□□□□ 0.82
VPS28-209ENST00000528142 NOP53Q9NZM5 478 aaKnown RBP20.2■□□□□ 0.82
VPS28-209ENST00000528142 STX18Q9P2W9 335 aaKnown RBP20.2■□□□□ 0.82
VPS28-209ENST00000528142 PACSIN3Q9UKS6 424 aa20.2■□□□□ 0.82
VPS28-209ENST00000528142 LRRK1Q38SD2 2015 aa20.2■□□□□ 0.82
VPS28-209ENST00000528142 PABPN1LA6NDY0 278 aaKnown RBP20.2■□□□□ 0.82
VPS28-209ENST00000528142 IGLON5A6NGN9 336 aa20.2■□□□□ 0.82
VPS28-209ENST00000528142 SYNCRIPO60506 623 aaKnown RBP20.2■□□□□ 0.82
VPS28-209ENST00000528142 RNASEH1O60930 286 aaKnown RBP20.2■□□□□ 0.82
VPS28-209ENST00000528142 CLDN9O95484 217 aa20.2■□□□□ 0.82
VPS28-209ENST00000528142 ADH1BP00325 375 aa20.2■□□□□ 0.82
VPS28-209ENST00000528142 CAPN3P20807 821 aa20.2■□□□□ 0.82
VPS28-209ENST00000528142 ZFP36L2P47974 494 aaKnown RBP20.2■□□□□ 0.82
VPS28-209ENST00000528142 THOP1P52888 689 aa20.2■□□□□ 0.82
VPS28-209ENST00000528142 PSME3P61289 254 aa20.2■□□□□ 0.82
VPS28-209ENST00000528142 EMX2Q04743 252 aa20.2■□□□□ 0.82
VPS28-209ENST00000528142 PDCD4Q53EL6 469 aaKnown RBP20.2■□□□□ 0.82
VPS28-209ENST00000528142 BLOC1S3Q6QNY0 202 aa20.2■□□□□ 0.82
VPS28-209ENST00000528142 ADAMTSL4Q6UY14 1074 aa20.2■□□□□ 0.82
VPS28-209ENST00000528142 RAB11FIP1Q6WKZ4 1283 aaPredicted RBP20.2■□□□□ 0.82
Retrieved 100 of 20,778 RNA–protein pairs in 37.7 ms