RNA–Protein interactions for RNA: ENST00000527797.6

VPS28-208, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 1,609 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-208ENST00000527797 ZBTB32Q9Y2Y4 487 aaPredicted RBP20.53■□□□□ 0.88
VPS28-208ENST00000527797 A0A1W2PPC4 97 aa20.52■□□□□ 0.88
VPS28-208ENST00000527797 PRSS38A1L453 326 aa20.52■□□□□ 0.88
VPS28-208ENST00000527797 ZNF195O14628 629 aa20.52■□□□□ 0.88
VPS28-208ENST00000527797 CCNT2O60583 730 aaKnown RBP20.52■□□□□ 0.88
VPS28-208ENST00000527797 DCTN3O75935 186 aa20.52■□□□□ 0.88
VPS28-208ENST00000527797 ACADLP28330 430 aa20.52■□□□□ 0.88
VPS28-208ENST00000527797 GGT5P36269 586 aa20.52■□□□□ 0.88
VPS28-208ENST00000527797 GNPDA1P46926 289 aa20.52■□□□□ 0.88
VPS28-208ENST00000527797 RABIFP47224 123 aa20.52■□□□□ 0.88
VPS28-208ENST00000527797 SIGLEC14Q08ET2 396 aa20.52■□□□□ 0.88
VPS28-208ENST00000527797 IFT88Q13099 833 aa20.52■□□□□ 0.88
VPS28-208ENST00000527797 RBBP7Q16576 425 aa20.52■□□□□ 0.88
VPS28-208ENST00000527797 Q6ZSR6 202 aa20.52■□□□□ 0.88
VPS28-208ENST00000527797 MAVSQ7Z434 540 aa20.52■□□□□ 0.88
VPS28-208ENST00000527797 ABI3BPQ7Z7G0 1075 aa20.52■□□□□ 0.88
VPS28-208ENST00000527797 FBXO15Q8NCQ5 510 aaPredicted RBP20.52■□□□□ 0.88
VPS28-208ENST00000527797 SNX19Q92543 992 aa20.52■□□□□ 0.88
VPS28-208ENST00000527797 CCDC138Q96M89 665 aa20.52■□□□□ 0.88
VPS28-208ENST00000527797 UHRF1Q96T88 793 aaPredicted RBP20.52■□□□□ 0.88
VPS28-208ENST00000527797 PCED1AQ9H1Q7 454 aa20.52■□□□□ 0.88
VPS28-208ENST00000527797 CARS2Q9HA77 564 aaKnown RBP20.52■□□□□ 0.88
VPS28-208ENST00000527797 ZBTB26Q9HCK0 441 aa20.52■□□□□ 0.88
VPS28-208ENST00000527797 OPTCQ9UBM4 332 aa20.52■□□□□ 0.88
VPS28-208ENST00000527797 ACSL5Q9ULC5 683 aa20.52■□□□□ 0.88
VPS28-208ENST00000527797 APOBEC2Q9Y235 224 aaKnown RBP20.52■□□□□ 0.88
VPS28-208ENST00000527797 TRAF6Q9Y4K3 522 aa20.52■□□□□ 0.88
VPS28-208ENST00000527797 ANGPTL3Q9Y5C1 460 aa20.52■□□□□ 0.88
VPS28-208ENST00000527797 PPP6CO00743 305 aa20.51■□□□□ 0.87
VPS28-208ENST00000527797 TNFRSF10CO14798 259 aa20.51■□□□□ 0.87
VPS28-208ENST00000527797 STK16O75716 305 aa20.51■□□□□ 0.87
VPS28-208ENST00000527797 C1orf105O95561 183 aa20.51■□□□□ 0.87
VPS28-208ENST00000527797 BDKRB1P46663 353 aa20.51■□□□□ 0.87
VPS28-208ENST00000527797 GTF2H2Q13888 395 aa20.51■□□□□ 0.87
VPS28-208ENST00000527797 EEF1AKMT2Q5JPI9 291 aaKnown RBP20.51■□□□□ 0.87
VPS28-208ENST00000527797 GTF2H2CQ6P1K8 395 aa20.51■□□□□ 0.87
VPS28-208ENST00000527797 UNC5DQ6UXZ4 953 aa20.51■□□□□ 0.87
VPS28-208ENST00000527797 GOLGA7Q7Z5G4 137 aa20.51■□□□□ 0.87
VPS28-208ENST00000527797 PDZD3Q86UT5 571 aa20.51■□□□□ 0.87
VPS28-208ENST00000527797 CLYBLQ8N0X4 340 aa20.51■□□□□ 0.87
VPS28-208ENST00000527797 TEX9Q8N6V9 391 aa20.51■□□□□ 0.87
VPS28-208ENST00000527797 ATL1Q8WXF7 558 aa20.51■□□□□ 0.87
VPS28-208ENST00000527797 FBXL8Q96CD0 374 aa20.51■□□□□ 0.87
VPS28-208ENST00000527797 STK38LQ9Y2H1 464 aa20.51■□□□□ 0.87
VPS28-208ENST00000527797 CCT8L1PA6NM43 557 aa20.5■□□□□ 0.87
VPS28-208ENST00000527797 METTL12A8MUP2 240 aa20.5■□□□□ 0.87
VPS28-208ENST00000527797 GIPC1O14908 333 aa20.5■□□□□ 0.87
VPS28-208ENST00000527797 AXIN1O15169 862 aa20.5■□□□□ 0.87
VPS28-208ENST00000527797 FGF4P08620 206 aa20.5■□□□□ 0.87
VPS28-208ENST00000527797 IDH3AP50213 366 aa20.5■□□□□ 0.87
VPS28-208ENST00000527797 EPGNQ6UW88 154 aa20.5■□□□□ 0.87
VPS28-208ENST00000527797 MAMSTRQ6ZN01 415 aa20.5■□□□□ 0.87
VPS28-208ENST00000527797 TRPM8Q7Z2W7 1104 aa20.5■□□□□ 0.87
VPS28-208ENST00000527797 CADM4Q8NFZ8 388 aa20.5■□□□□ 0.87
VPS28-208ENST00000527797 MAGEC3Q8TD91 643 aa20.5■□□□□ 0.87
VPS28-208ENST00000527797 AGAP11Q8TF27 550 aa20.5■□□□□ 0.87
VPS28-208ENST00000527797 OR1E3Q8WZA6 343 aa20.5■□□□□ 0.87
VPS28-208ENST00000527797 RILPQ96NA2 401 aa20.5■□□□□ 0.87
VPS28-208ENST00000527797 OR2M4Q96R27 311 aa20.5■□□□□ 0.87
VPS28-208ENST00000527797 EBF4Q9BQW3 602 aa20.5■□□□□ 0.87
VPS28-208ENST00000527797 ZDHHC5Q9C0B5 715 aa20.5■□□□□ 0.87
VPS28-208ENST00000527797 TNFRSF12AQ9NP84 129 aa20.5■□□□□ 0.87
VPS28-208ENST00000527797 HEY2Q9UBP5 337 aa20.5■□□□□ 0.87
VPS28-208ENST00000527797 KLQ9UEF7 1012 aa20.5■□□□□ 0.87
VPS28-208ENST00000527797 INVSQ9Y283 1065 aa20.5■□□□□ 0.87
VPS28-208ENST00000527797 FIS1Q9Y3D6 152 aa20.5■□□□□ 0.87
VPS28-208ENST00000527797 TRPC5OSA6NMA1 111 aa20.49■□□□□ 0.87
VPS28-208ENST00000527797 TMEM233B4DJY2 109 aa20.49■□□□□ 0.87
VPS28-208ENST00000527797 K7EPI3 171 aa20.49■□□□□ 0.87
VPS28-208ENST00000527797 K7ESF4 209 aa20.49■□□□□ 0.87
VPS28-208ENST00000527797 IFRD1O00458 451 aaPredicted RBP20.49■□□□□ 0.87
VPS28-208ENST00000527797 DIAPH2O60879 1101 aa20.49■□□□□ 0.87
VPS28-208ENST00000527797 SLC35G4P0C7Q5 338 aa20.49■□□□□ 0.87
VPS28-208ENST00000527797 GDF5P43026 501 aa20.49■□□□□ 0.87
VPS28-208ENST00000527797 USP39Q53GS9 565 aaKnown RBP20.49■□□□□ 0.87
VPS28-208ENST00000527797 TPRG1LQ5T0D9 272 aa20.49■□□□□ 0.87
VPS28-208ENST00000527797 VWA5B1Q5TIE3 1220 aa20.49■□□□□ 0.87
VPS28-208ENST00000527797 FAM174AQ8TBP5 190 aa20.49■□□□□ 0.87
VPS28-208ENST00000527797 ATP6V1E2Q96A05 226 aa20.49■□□□□ 0.87
VPS28-208ENST00000527797 SPACA7Q96KW9 195 aa20.49■□□□□ 0.87
VPS28-208ENST00000527797 NECAB3Q96P71 396 aaPredicted RBP20.49■□□□□ 0.87
VPS28-208ENST00000527797 ZNF382Q96SR6 550 aa20.49■□□□□ 0.87
VPS28-208ENST00000527797 PKP4Q99569 1192 aa20.49■□□□□ 0.87
VPS28-208ENST00000527797 OSGEPL1Q9H4B0 414 aa20.49■□□□□ 0.87
VPS28-208ENST00000527797 SLC32A1Q9H598 525 aa20.49■□□□□ 0.87
VPS28-208ENST00000527797 NOL11Q9H8H0 719 aaKnown RBP20.49■□□□□ 0.87
VPS28-208ENST00000527797 PSMD13Q9UNM6 376 aa20.49■□□□□ 0.87
VPS28-208ENST00000527797 KCNK6Q9Y257 313 aa20.49■□□□□ 0.87
VPS28-208ENST00000527797 AZIN1O14977 448 aa20.49■□□□□ 0.87
VPS28-208ENST00000527797 ESRRBO95718 433 aa20.49■□□□□ 0.87
VPS28-208ENST00000527797 IDSP22304 550 aa20.49■□□□□ 0.87
VPS28-208ENST00000527797 PIK3CGP48736 1102 aa20.49■□□□□ 0.87
VPS28-208ENST00000527797 PKNOX1P55347 436 aa20.49■□□□□ 0.87
VPS28-208ENST00000527797 PTK2BQ14289 1009 aa20.49■□□□□ 0.87
VPS28-208ENST00000527797 CWF19L1Q69YN2 538 aaKnown RBP20.49■□□□□ 0.87
VPS28-208ENST00000527797 LRRC70Q7Z2Q7 622 aa20.49■□□□□ 0.87
VPS28-208ENST00000527797 SPDYE1Q8NFV5 336 aaPredicted RBP20.49■□□□□ 0.87
VPS28-208ENST00000527797 OR13H1Q8NG92 308 aa20.49■□□□□ 0.87
VPS28-208ENST00000527797 MAPK15Q8TD08 544 aa20.49■□□□□ 0.87
VPS28-208ENST00000527797 TFGQ92734 400 aaPredicted RBP20.49■□□□□ 0.87
Retrieved 100 of 20,778 RNA–protein pairs in 63.7 ms