RNA–Protein interactions for RNA: ENST00000526734.5

VPS28-206, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 2

Gene VPS28, Length 570 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-206ENST00000526734 CPT1BQ92523 772 aa20.02■□□□□ 0.8
VPS28-206ENST00000526734 STAMBPL1Q96FJ0 436 aa20.02■□□□□ 0.8
VPS28-206ENST00000526734 CATSPER2Q96P56 530 aa20.02■□□□□ 0.8
VPS28-206ENST00000526734 TUBB2BQ9BVA1 445 aa20.02■□□□□ 0.8
VPS28-206ENST00000526734 SLC12A9Q9BXP2 914 aa20.02■□□□□ 0.8
VPS28-206ENST00000526734 PITPNM3Q9BZ71 974 aa20.02■□□□□ 0.8
VPS28-206ENST00000526734 FANCEQ9HB96 536 aa20.02■□□□□ 0.8
VPS28-206ENST00000526734 SOHLH2Q9NX45 425 aa20.02■□□□□ 0.8
VPS28-206ENST00000526734 TRMT1Q9NXH9 659 aaKnown RBP20.02■□□□□ 0.8
VPS28-206ENST00000526734 OR6C2Q9NZP2 312 aa20.02■□□□□ 0.8
VPS28-206ENST00000526734 MARCH4Q9P2E8 410 aaPredicted RBP20.02■□□□□ 0.8
VPS28-206ENST00000526734 VPS9D1Q9Y2B5 631 aa20.02■□□□□ 0.8
VPS28-206ENST00000526734 NEU2Q9Y3R4 380 aa20.02■□□□□ 0.8
VPS28-206ENST00000526734 MRFAP1Q9Y605 127 aa20.02■□□□□ 0.8
VPS28-206ENST00000526734 TCRBV7S3A2A0A539 114 aa20.01■□□□□ 0.79
VPS28-206ENST00000526734 BHMG1C9JSJ3 638 aaPredicted RBP20.01■□□□□ 0.79
VPS28-206ENST00000526734 H3BMM5 538 aa20.01■□□□□ 0.79
VPS28-206ENST00000526734 BTN3A1O00481 513 aa20.01■□□□□ 0.79
VPS28-206ENST00000526734 GPC4O75487 556 aa20.01■□□□□ 0.79
VPS28-206ENST00000526734 KIAA0754O94854 1291 aa20.01■□□□□ 0.79
VPS28-206ENST00000526734 VAPBO95292 243 aa20.01■□□□□ 0.79
VPS28-206ENST00000526734 MSL3P1P0C860 447 aa20.01■□□□□ 0.79
VPS28-206ENST00000526734 FOLR1P15328 257 aa20.01■□□□□ 0.79
VPS28-206ENST00000526734 OGNP20774 298 aaKnown RBP20.01■□□□□ 0.79
VPS28-206ENST00000526734 CCR7P32248 378 aa20.01■□□□□ 0.79
VPS28-206ENST00000526734 TYSND1Q2T9J0 566 aa20.01■□□□□ 0.79
VPS28-206ENST00000526734 UNC5DQ6UXZ4 953 aa20.01■□□□□ 0.79
VPS28-206ENST00000526734 OTUD6BQ8N6M0 293 aa20.01■□□□□ 0.79
VPS28-206ENST00000526734 OR5AR1Q8NGP9 310 aa20.01■□□□□ 0.79
VPS28-206ENST00000526734 MFSD3Q96ES6 412 aa20.01■□□□□ 0.79
VPS28-206ENST00000526734 P2RY12Q9H244 342 aa20.01■□□□□ 0.79
VPS28-206ENST00000526734 LNPEPQ9UIQ6 1025 aa20.01■□□□□ 0.79
VPS28-206ENST00000526734 RPS6KL1Q9Y6S9 549 aa20.01■□□□□ 0.79
VPS28-206ENST00000526734 FAM237BA0A1B0GVD1 139 aa20■□□□□ 0.79
VPS28-206ENST00000526734 SDR42E2A6NKP2 422 aa20■□□□□ 0.79
VPS28-206ENST00000526734 BTN3A3O00478 584 aa20■□□□□ 0.79
VPS28-206ENST00000526734 TMEM63AO94886 807 aa20■□□□□ 0.79
VPS28-206ENST00000526734 CCNYL3P0C7X3 344 aa20■□□□□ 0.79
VPS28-206ENST00000526734 EBLN1P0CF75 366 aa20■□□□□ 0.79
VPS28-206ENST00000526734 WT1P19544 449 aaPredicted RBP20■□□□□ 0.79
VPS28-206ENST00000526734 ARNTP27540 789 aa20■□□□□ 0.79
VPS28-206ENST00000526734 PRDX3P30048 256 aaKnown RBP20■□□□□ 0.79
VPS28-206ENST00000526734 ADARP55265 1226 aaKnown RBP20■□□□□ 0.79
VPS28-206ENST00000526734 C19orf57Q0VDD7 668 aa20■□□□□ 0.79
VPS28-206ENST00000526734 HSPA14Q0VDF9 509 aa20■□□□□ 0.79
VPS28-206ENST00000526734 PRKG2Q13237 762 aa20■□□□□ 0.79
VPS28-206ENST00000526734 BRD3Q15059 726 aa20■□□□□ 0.79
VPS28-206ENST00000526734 CASC4Q6P4E1 433 aa20■□□□□ 0.79
VPS28-206ENST00000526734 HOOK3Q86VS8 718 aa20■□□□□ 0.79
VPS28-206ENST00000526734 GSDMBQ8TAX9 411 aa20■□□□□ 0.79
VPS28-206ENST00000526734 FAM117AQ9C073 453 aa20■□□□□ 0.79
VPS28-206ENST00000526734 ICKQ9UPZ9 632 aa20■□□□□ 0.79
VPS28-206ENST00000526734 LOC101059948A0A1B0GTJ6 334 aa19.99■□□□□ 0.79
VPS28-206ENST00000526734 PIPSLA2A3N6 862 aa19.99■□□□□ 0.79
VPS28-206ENST00000526734 SLCO2B1O94956 709 aa19.99■□□□□ 0.79
VPS28-206ENST00000526734 SFTPCP11686 197 aa19.99■□□□□ 0.79
VPS28-206ENST00000526734 ZNF28P17035 718 aa19.99■□□□□ 0.79
VPS28-206ENST00000526734 AOAHP28039 575 aa19.99■□□□□ 0.79
VPS28-206ENST00000526734 ARCN1P48444 511 aaKnown RBP19.99■□□□□ 0.79
VPS28-206ENST00000526734 KCNAB1Q14722 419 aa19.99■□□□□ 0.79
VPS28-206ENST00000526734 ANKRD22Q5VYY1 191 aa19.99■□□□□ 0.79
VPS28-206ENST00000526734 CAND1Q86VP6 1230 aaKnown RBP19.99■□□□□ 0.79
VPS28-206ENST00000526734 DCUN1D3Q8IWE4 304 aa19.99■□□□□ 0.79
VPS28-206ENST00000526734 LMNTD2Q8IXW0 634 aa19.99■□□□□ 0.79
VPS28-206ENST00000526734 PPIL6Q8IXY8 311 aa19.99■□□□□ 0.79
VPS28-206ENST00000526734 ADGRF3Q8IZF5 1079 aa19.99■□□□□ 0.79
VPS28-206ENST00000526734 SLCO2A1Q92959 643 aa19.99■□□□□ 0.79
VPS28-206ENST00000526734 MED8Q96G25 268 aa19.99■□□□□ 0.79
VPS28-206ENST00000526734 ELMO2Q96JJ3 720 aa19.99■□□□□ 0.79
VPS28-206ENST00000526734 RUNDC3BQ96NL0 473 aa19.99■□□□□ 0.79
VPS28-206ENST00000526734 SERPINB12Q96P63 405 aa19.99■□□□□ 0.79
VPS28-206ENST00000526734 ARHGAP9Q9BRR9 750 aa19.99■□□□□ 0.79
VPS28-206ENST00000526734 KCND1Q9NSA2 647 aa19.99■□□□□ 0.79
VPS28-206ENST00000526734 ACTR10Q9NZ32 417 aa19.99■□□□□ 0.79
VPS28-206ENST00000526734 KCND3Q9UK17 655 aa19.99■□□□□ 0.79
VPS28-206ENST00000526734 PADI1Q9ULC6 663 aa19.99■□□□□ 0.79
VPS28-206ENST00000526734 CDYLQ9Y232 598 aa19.99■□□□□ 0.79
VPS28-206ENST00000526734 PIKFYVEQ9Y2I7 2098 aa19.99■□□□□ 0.79
VPS28-206ENST00000526734 SLC9B1P1A6NJY1 282 aa19.98■□□□□ 0.79
VPS28-206ENST00000526734 CPNE3O75131 537 aaKnown RBP19.98■□□□□ 0.79
VPS28-206ENST00000526734 ESR1P03372 595 aa19.98■□□□□ 0.79
VPS28-206ENST00000526734 ITGB6P18564 788 aa19.98■□□□□ 0.79
VPS28-206ENST00000526734 PPP1R7Q15435 360 aa19.98■□□□□ 0.79
VPS28-206ENST00000526734 PLEKHS1Q5SXH7 462 aa19.98■□□□□ 0.79
VPS28-206ENST00000526734 SPESP1Q6UW49 350 aa19.98■□□□□ 0.79
VPS28-206ENST00000526734 LDB1Q86U70 411 aaPredicted RBP19.98■□□□□ 0.79
VPS28-206ENST00000526734 GALNT6Q8NCL4 622 aa19.98■□□□□ 0.79
VPS28-206ENST00000526734 ZNF501Q96CX3 271 aaPredicted RBP19.98■□□□□ 0.79
VPS28-206ENST00000526734 TWSG1Q9GZX9 223 aa19.98■□□□□ 0.79
VPS28-206ENST00000526734 CHRNA10Q9GZZ6 450 aa19.98■□□□□ 0.79
VPS28-206ENST00000526734 TDRKHQ9Y2W6 561 aaKnown RBP19.98■□□□□ 0.79
VPS28-206ENST00000526734 C21orf140B9A014 251 aa19.97■□□□□ 0.79
VPS28-206ENST00000526734 AVILO75366 819 aa19.97■□□□□ 0.79
VPS28-206ENST00000526734 RECKO95980 971 aa19.97■□□□□ 0.79
VPS28-206ENST00000526734 ATP5DP30049 168 aa19.97■□□□□ 0.79
VPS28-206ENST00000526734 MAGEA3P43357 314 aa19.97■□□□□ 0.79
VPS28-206ENST00000526734 EIF3BP55884 814 aaKnown RBP19.97■□□□□ 0.79
VPS28-206ENST00000526734 KIR2DS3Q14952 304 aa19.97■□□□□ 0.79
VPS28-206ENST00000526734 PWWP2BQ6NUJ5 590 aa19.97■□□□□ 0.79
VPS28-206ENST00000526734 TTC23LQ6PF05 361 aa19.97■□□□□ 0.79
Retrieved 100 of 20,778 RNA–protein pairs in 34.8 ms