RNA–Protein interactions for RNA: ENST00000519664.1

SYNPO-204, Transcript of synaptopodin, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SYNPO, Length 4,571 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNPO-204ENST00000519664 SH3RF2Q8TEC5 729 aa11.49□□□□□ -0.57
SYNPO-204ENST00000519664 ANKRD49Q8WVL7 239 aa11.49□□□□□ -0.57
SYNPO-204ENST00000519664 DEPDC7Q96QD5 511 aa11.49□□□□□ -0.57
SYNPO-204ENST00000519664 GPATCH1Q9BRR8 931 aaKnown RBP11.49□□□□□ -0.57
SYNPO-204ENST00000519664 SLC9A8Q9Y2E8 581 aa11.49□□□□□ -0.57
SYNPO-204ENST00000519664 ILVBLA1L0T0 632 aa11.49□□□□□ -0.57
SYNPO-204ENST00000519664 FAM234BA2RU67 622 aa11.49□□□□□ -0.57
SYNPO-204ENST00000519664 ARVCFO00192 962 aa11.49□□□□□ -0.57
SYNPO-204ENST00000519664 UMPSP11172 480 aa11.49□□□□□ -0.57
SYNPO-204ENST00000519664 PPM1AP35813 382 aa11.49□□□□□ -0.57
SYNPO-204ENST00000519664 CDK9P50750 372 aaKnown RBP11.49□□□□□ -0.57
SYNPO-204ENST00000519664 PLA2G16P53816 162 aa11.49□□□□□ -0.57
SYNPO-204ENST00000519664 NFKB2Q00653 900 aa11.49□□□□□ -0.57
SYNPO-204ENST00000519664 GPR17Q13304 367 aa11.49□□□□□ -0.57
SYNPO-204ENST00000519664 MARCH8Q5T0T0 291 aa11.49□□□□□ -0.57
SYNPO-204ENST00000519664 CCNYL2Q5T2Q4 361 aa11.49□□□□□ -0.57
SYNPO-204ENST00000519664 CYP2U1Q7Z449 544 aa11.49□□□□□ -0.57
SYNPO-204ENST00000519664 GPR65Q8IYL9 337 aa11.49□□□□□ -0.57
SYNPO-204ENST00000519664 MCFD2Q8NI22 146 aa11.49□□□□□ -0.57
SYNPO-204ENST00000519664 SUN5Q8TC36 379 aa11.49□□□□□ -0.57
SYNPO-204ENST00000519664 KCNK13Q9HB14 408 aa11.49□□□□□ -0.57
SYNPO-204ENST00000519664 CFAP20Q9Y6A4 193 aaKnown RBP11.49□□□□□ -0.57
SYNPO-204ENST00000519664 TGFB1P01137 390 aa11.49□□□□□ -0.57
SYNPO-204ENST00000519664 NTSP30990 170 aa11.49□□□□□ -0.57
SYNPO-204ENST00000519664 FMO3P31513 532 aa11.49□□□□□ -0.57
SYNPO-204ENST00000519664 CAPGP40121 348 aa11.49□□□□□ -0.57
SYNPO-204ENST00000519664 KIAA1324Q6UXG2 1013 aaKnown RBP11.49□□□□□ -0.57
SYNPO-204ENST00000519664 CDK20Q8IZL9 346 aa11.49□□□□□ -0.57
SYNPO-204ENST00000519664 CAMKK1Q8N5S9 505 aa11.49□□□□□ -0.57
SYNPO-204ENST00000519664 PPP1R16AQ96I34 528 aa11.49□□□□□ -0.57
SYNPO-204ENST00000519664 RBM4BQ9BQ04 359 aaKnown RBP11.49□□□□□ -0.57
SYNPO-204ENST00000519664 RBM4Q9BWF3 364 aaKnown RBP11.49□□□□□ -0.57
SYNPO-204ENST00000519664 PDE10AQ9Y233 779 aa11.49□□□□□ -0.57
SYNPO-204ENST00000519664 ANGPT4Q9Y264 503 aa11.49□□□□□ -0.57
SYNPO-204ENST00000519664 HAS3O00219 553 aa11.48□□□□□ -0.57
SYNPO-204ENST00000519664 TGM3Q08188 693 aa11.48□□□□□ -0.57
SYNPO-204ENST00000519664 TOP3AQ13472 1001 aaPredicted RBP11.48□□□□□ -0.57
SYNPO-204ENST00000519664 SYT16Q17RD7 645 aa11.48□□□□□ -0.57
SYNPO-204ENST00000519664 DDI2Q5TDH0 399 aa11.48□□□□□ -0.57
SYNPO-204ENST00000519664 KLHDC10Q6PID8 442 aa11.48□□□□□ -0.57
SYNPO-204ENST00000519664 PARGQ86W56 976 aa11.48□□□□□ -0.57
SYNPO-204ENST00000519664 ZMIZ2Q8NF64 920 aa11.48□□□□□ -0.57
SYNPO-204ENST00000519664 USP7Q93009 1102 aa11.48□□□□□ -0.57
SYNPO-204ENST00000519664 SMIM14Q96QK8 99 aa11.48□□□□□ -0.57
SYNPO-204ENST00000519664 NDOR1Q9UHB4 597 aa11.48□□□□□ -0.57
SYNPO-204ENST00000519664 VPS51Q9UID3 782 aa11.48□□□□□ -0.57
SYNPO-204ENST00000519664 ERGIC3Q9Y282 383 aa11.48□□□□□ -0.57
SYNPO-204ENST00000519664 RNF11Q9Y3C5 154 aa11.48□□□□□ -0.57
SYNPO-204ENST00000519664 TBC1D3DA0A087WVF3 549 aa11.48□□□□□ -0.57
SYNPO-204ENST00000519664 TBC1D3IA0A087WXS9 549 aa11.48□□□□□ -0.57
SYNPO-204ENST00000519664 TBC1D3EA0A087X179 549 aa11.48□□□□□ -0.57
SYNPO-204ENST00000519664 TBC1D3KA0A087X1G2 549 aa11.48□□□□□ -0.57
SYNPO-204ENST00000519664 KRT87PA6NCN2 255 aa11.48□□□□□ -0.57
SYNPO-204ENST00000519664 TBC1D3FA6NER0 549 aaPredicted RBP11.48□□□□□ -0.57
SYNPO-204ENST00000519664 TBC1D3LB9A6J9 549 aa11.48□□□□□ -0.57
SYNPO-204ENST00000519664 K7ERQ8 282 aa11.48□□□□□ -0.57
SYNPO-204ENST00000519664 IDH3BO43837 385 aa11.48□□□□□ -0.57
SYNPO-204ENST00000519664 STATHP02808 62 aa11.48□□□□□ -0.57
SYNPO-204ENST00000519664 TBC1D3HP0C7X1 549 aa11.48□□□□□ -0.57
SYNPO-204ENST00000519664 MAT2AP31153 395 aaKnown RBP11.48□□□□□ -0.57
SYNPO-204ENST00000519664 HSPB3Q12988 150 aa11.48□□□□□ -0.57
SYNPO-204ENST00000519664 C9orf64Q5T6V5 341 aa11.48□□□□□ -0.57
SYNPO-204ENST00000519664 TBC1D3GQ6DHY5 549 aa11.48□□□□□ -0.57
SYNPO-204ENST00000519664 TBC1D3CQ6IPX1 549 aa11.48□□□□□ -0.57
SYNPO-204ENST00000519664 C16orf62Q7Z3J2 963 aa11.48□□□□□ -0.57
SYNPO-204ENST00000519664 IFNLR1Q8IU57 520 aaPredicted RBP11.48□□□□□ -0.57
SYNPO-204ENST00000519664 TBC1D3Q8IZP1 549 aaPredicted RBP11.48□□□□□ -0.57
SYNPO-204ENST00000519664 TMEM199Q8N511 208 aa11.48□□□□□ -0.57
SYNPO-204ENST00000519664 KREMEN2Q8NCW0 462 aa11.48□□□□□ -0.57
SYNPO-204ENST00000519664 FAM110BQ8TC76 370 aa11.48□□□□□ -0.57
SYNPO-204ENST00000519664 TMBIM1Q969X1 311 aa11.48□□□□□ -0.57
SYNPO-204ENST00000519664 IMP4Q96G21 291 aaKnown RBP11.48□□□□□ -0.57
SYNPO-204ENST00000519664 TSGA13Q96PP4 275 aa11.48□□□□□ -0.57
SYNPO-204ENST00000519664 CHCHD6Q9BRQ6 235 aa11.48□□□□□ -0.57
SYNPO-204ENST00000519664 WDR6Q9NNW5 1121 aaKnown RBP11.48□□□□□ -0.57
SYNPO-204ENST00000519664 SUCOQ9UBS9 1254 aaKnown RBP11.48□□□□□ -0.57
SYNPO-204ENST00000519664 DPP7Q9UHL4 492 aa11.48□□□□□ -0.57
SYNPO-204ENST00000519664 TJP1Q07157 1748 aa11.48□□□□□ -0.57
SYNPO-204ENST00000519664 MAGEB17A8MXT2 336 aa11.48□□□□□ -0.57
SYNPO-204ENST00000519664 FOXD2O60548 495 aaPredicted RBP11.48□□□□□ -0.57
SYNPO-204ENST00000519664 PRAMEF11O60813 436 aa11.48□□□□□ -0.57
SYNPO-204ENST00000519664 S1PR4O95977 384 aa11.48□□□□□ -0.57
SYNPO-204ENST00000519664 DHRS4L1P0CG22 281 aa11.48□□□□□ -0.57
SYNPO-204ENST00000519664 BNIP3Q12983 259 aa11.48□□□□□ -0.57
SYNPO-204ENST00000519664 SF1Q15637 639 aaKnown RBP11.48□□□□□ -0.57
SYNPO-204ENST00000519664 TECRLQ5HYJ1 363 aa11.48□□□□□ -0.57
SYNPO-204ENST00000519664 TNFAIP8L2Q6P589 184 aaPredicted RBP11.48□□□□□ -0.57
SYNPO-204ENST00000519664 XKR5Q6UX68 686 aa11.48□□□□□ -0.57
SYNPO-204ENST00000519664 SNX20Q7Z614 316 aa11.48□□□□□ -0.57
SYNPO-204ENST00000519664 TMCO2Q7Z6W1 182 aaPredicted RBP11.48□□□□□ -0.57
SYNPO-204ENST00000519664 SERINC5Q86VE9 423 aa11.48□□□□□ -0.57
SYNPO-204ENST00000519664 DPP10Q8N608 796 aa11.48□□□□□ -0.57
SYNPO-204ENST00000519664 TRPV3Q8NET8 790 aa11.48□□□□□ -0.57
SYNPO-204ENST00000519664 FLCNQ8NFG4 579 aa11.48□□□□□ -0.57
SYNPO-204ENST00000519664 OR5AK3PQ8NH89 298 aa11.48□□□□□ -0.57
SYNPO-204ENST00000519664 SCAMP4Q969E2 229 aa11.48□□□□□ -0.57
SYNPO-204ENST00000519664 UBE2E3Q969T4 207 aa11.48□□□□□ -0.57
SYNPO-204ENST00000519664 KIAA1191Q96A73 305 aa11.48□□□□□ -0.57
SYNPO-204ENST00000519664 ART5Q96L15 291 aa11.48□□□□□ -0.57
SYNPO-204ENST00000519664 SUV39H2Q9H5I1 410 aa11.48□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 28.2 ms