RNA–Protein interactions for RNA: ENST00000511496.5

LIMCH1-213, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 3,439 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-213ENST00000511496 PIK3CBP42338 1070 aa11.84□□□□□ -0.51
LIMCH1-213ENST00000511496 GNPDA1P46926 289 aa11.84□□□□□ -0.51
LIMCH1-213ENST00000511496 PTPRCAPQ14761 206 aa11.84□□□□□ -0.51
LIMCH1-213ENST00000511496 FAM131AQ6UXB0 335 aa11.84□□□□□ -0.51
LIMCH1-213ENST00000511496 C15orf39Q6ZRI6 1047 aa11.84□□□□□ -0.51
LIMCH1-213ENST00000511496 LARP4Q71RC2 724 aaKnown RBP eCLIP11.84□□□□□ -0.51
LIMCH1-213ENST00000511496 KCNMB4Q86W47 210 aa11.84□□□□□ -0.51
LIMCH1-213ENST00000511496 WDR48Q8TAF3 677 aa11.84□□□□□ -0.51
LIMCH1-213ENST00000511496 UFD1Q92890 307 aa11.84□□□□□ -0.51
LIMCH1-213ENST00000511496 PTP4A1Q93096 173 aa11.84□□□□□ -0.51
LIMCH1-213ENST00000511496 HYLS1Q96M11 299 aa11.84□□□□□ -0.51
LIMCH1-213ENST00000511496 RDH12Q96NR8 316 aa11.84□□□□□ -0.51
LIMCH1-213ENST00000511496 C1QTNF1Q9BXJ1 281 aa11.84□□□□□ -0.51
LIMCH1-213ENST00000511496 UGT2B28Q9BY64 529 aa11.84□□□□□ -0.51
LIMCH1-213ENST00000511496 CISHQ9NSE2 258 aa11.84□□□□□ -0.51
LIMCH1-213ENST00000511496 TRHDEQ9UKU6 1024 aa11.84□□□□□ -0.51
LIMCH1-213ENST00000511496 MGAT4AQ9UM21 535 aa11.84□□□□□ -0.51
LIMCH1-213ENST00000511496 VPS9D1Q9Y2B5 631 aa11.84□□□□□ -0.51
LIMCH1-213ENST00000511496 A3GALT2U3KPV4 340 aa11.84□□□□□ -0.51
LIMCH1-213ENST00000511496 ERVV-1B6SEH8 477 aa11.83□□□□□ -0.51
LIMCH1-213ENST00000511496 SULT1B1O43704 296 aa11.83□□□□□ -0.51
LIMCH1-213ENST00000511496 NPHS1O60500 1241 aa11.83□□□□□ -0.51
LIMCH1-213ENST00000511496 CST3P01034 146 aaPredicted RBP11.83□□□□□ -0.51
LIMCH1-213ENST00000511496 ALPPP05187 535 aa11.83□□□□□ -0.51
LIMCH1-213ENST00000511496 SLC35E2BP0CK96 405 aa11.83□□□□□ -0.51
LIMCH1-213ENST00000511496 POU2F1P14859 743 aa11.83□□□□□ -0.51
LIMCH1-213ENST00000511496 MAOBP27338 520 aa11.83□□□□□ -0.51
LIMCH1-213ENST00000511496 RYKP34925 604 aa11.83□□□□□ -0.51
LIMCH1-213ENST00000511496 MVKQ03426 396 aa11.83□□□□□ -0.51
LIMCH1-213ENST00000511496 SPANXN3Q5MJ09 141 aa11.83□□□□□ -0.51
LIMCH1-213ENST00000511496 NIPA1Q7RTP0 329 aa11.83□□□□□ -0.51
LIMCH1-213ENST00000511496 MAP4K3Q8IVH8 894 aa11.83□□□□□ -0.51
LIMCH1-213ENST00000511496 WDR11Q9BZH6 1224 aa11.83□□□□□ -0.51
LIMCH1-213ENST00000511496 NXF2Q9GZY0 626 aaKnown RBP11.83□□□□□ -0.51
LIMCH1-213ENST00000511496 TMEM168Q9H0V1 697 aa11.83□□□□□ -0.51
LIMCH1-213ENST00000511496 CDCP1Q9H5V8 836 aa11.83□□□□□ -0.51
LIMCH1-213ENST00000511496 EML4Q9HC35 981 aaKnown RBP11.83□□□□□ -0.51
LIMCH1-213ENST00000511496 NT5C1B-RDH14C9J2C7 533 aa11.83□□□□□ -0.52
LIMCH1-213ENST00000511496 PRSS23O95084 383 aa11.83□□□□□ -0.52
LIMCH1-213ENST00000511496 NPPAP01160 153 aa11.83□□□□□ -0.52
LIMCH1-213ENST00000511496 PPP3CCP48454 512 aa11.83□□□□□ -0.52
LIMCH1-213ENST00000511496 PPP4CP60510 307 aa11.83□□□□□ -0.52
LIMCH1-213ENST00000511496 MYL6P60660 151 aa11.83□□□□□ -0.52
LIMCH1-213ENST00000511496 S100A12P80511 92 aa11.83□□□□□ -0.52
LIMCH1-213ENST00000511496 YWHAHQ04917 246 aaPredicted RBP11.83□□□□□ -0.52
LIMCH1-213ENST00000511496 DSG2Q14126 1118 aa11.83□□□□□ -0.52
LIMCH1-213ENST00000511496 TOR1AIP1Q5JTV8 583 aa11.83□□□□□ -0.52
LIMCH1-213ENST00000511496 PDZK1Q5T2W1 519 aa11.83□□□□□ -0.52
LIMCH1-213ENST00000511496 INTS5Q6P9B9 1019 aaKnown RBP11.83□□□□□ -0.52
LIMCH1-213ENST00000511496 DCP1BQ8IZD4 617 aaKnown RBP11.83□□□□□ -0.52
LIMCH1-213ENST00000511496 DTWD1Q8N5C7 304 aa11.83□□□□□ -0.52
LIMCH1-213ENST00000511496 CCNYQ8ND76 341 aa11.83□□□□□ -0.52
LIMCH1-213ENST00000511496 SETD9Q8NE22 299 aa11.83□□□□□ -0.52
LIMCH1-213ENST00000511496 SYTL5Q8TDW5 730 aaPredicted RBP11.83□□□□□ -0.52
LIMCH1-213ENST00000511496 C19orf60Q96EN9 201 aa11.83□□□□□ -0.52
LIMCH1-213ENST00000511496 MCCC1Q96RQ3 725 aaPredicted RBP11.83□□□□□ -0.52
LIMCH1-213ENST00000511496 BCL2L14Q9BZR8 327 aa11.83□□□□□ -0.52
LIMCH1-213ENST00000511496 GALNT9Q9HCQ5 603 aa11.83□□□□□ -0.52
LIMCH1-213ENST00000511496 SLC39A1Q9NY26 324 aa11.83□□□□□ -0.52
LIMCH1-213ENST00000511496 DNAJB9Q9UBS3 223 aa11.83□□□□□ -0.52
LIMCH1-213ENST00000511496 MORF4L1Q9UBU8 362 aa11.83□□□□□ -0.52
LIMCH1-213ENST00000511496 CDK1P06493 297 aa11.83□□□□□ -0.52
LIMCH1-213ENST00000511496 S100A6P06703 90 aa11.83□□□□□ -0.52
LIMCH1-213ENST00000511496 CD9P21926 228 aa11.83□□□□□ -0.52
LIMCH1-213ENST00000511496 MTPNP58546 118 aa11.83□□□□□ -0.52
LIMCH1-213ENST00000511496 C2orf80Q0P641 193 aa11.83□□□□□ -0.52
LIMCH1-213ENST00000511496 KCNC3Q14003 757 aa11.83□□□□□ -0.52
LIMCH1-213ENST00000511496 CSHL1Q14406 222 aa11.83□□□□□ -0.52
LIMCH1-213ENST00000511496 HIPK1Q86Z02 1210 aa11.83□□□□□ -0.52
LIMCH1-213ENST00000511496 LAX1Q8IWV1 398 aa11.83□□□□□ -0.52
LIMCH1-213ENST00000511496 CARNMT1Q8N4J0 409 aa11.83□□□□□ -0.52
LIMCH1-213ENST00000511496 GDPD1Q8N9F7 314 aa11.83□□□□□ -0.52
LIMCH1-213ENST00000511496 CEP76Q8TAP6 659 aa11.83□□□□□ -0.52
LIMCH1-213ENST00000511496 ISL2Q96A47 359 aa11.83□□□□□ -0.52
LIMCH1-213ENST00000511496 MTERF3Q96E29 417 aa11.83□□□□□ -0.52
LIMCH1-213ENST00000511496 PPM1MQ96MI6 270 aa11.83□□□□□ -0.52
LIMCH1-213ENST00000511496 CARS2Q9HA77 564 aaKnown RBP11.83□□□□□ -0.52
LIMCH1-213ENST00000511496 TEX46H3BTG2 121 aa11.82□□□□□ -0.52
LIMCH1-213ENST00000511496 GSTA4O15217 222 aa11.82□□□□□ -0.52
LIMCH1-213ENST00000511496 ZNF623O75123 536 aa11.82□□□□□ -0.52
LIMCH1-213ENST00000511496 PDE9AO76083 593 aa11.82□□□□□ -0.52
LIMCH1-213ENST00000511496 SERPINF2P08697 491 aa11.82□□□□□ -0.52
LIMCH1-213ENST00000511496 CYP2F1P24903 491 aa11.82□□□□□ -0.52
LIMCH1-213ENST00000511496 ARHGDIBP52566 201 aa11.82□□□□□ -0.52
LIMCH1-213ENST00000511496 SNRPFP62306 86 aaKnown RBP11.82□□□□□ -0.52
LIMCH1-213ENST00000511496 CBLBQ13191 982 aa11.82□□□□□ -0.52
LIMCH1-213ENST00000511496 NFIXQ14938 502 aa11.82□□□□□ -0.52
LIMCH1-213ENST00000511496 IER5Q5VY09 327 aa11.82□□□□□ -0.52
LIMCH1-213ENST00000511496 FAM160B2Q86V87 743 aa11.82□□□□□ -0.52
LIMCH1-213ENST00000511496 PROSER1Q86XN7 944 aa11.82□□□□□ -0.52
LIMCH1-213ENST00000511496 ADGRG3Q86Y34 549 aa11.82□□□□□ -0.52
LIMCH1-213ENST00000511496 RDH10Q8IZV5 341 aa11.82□□□□□ -0.52
LIMCH1-213ENST00000511496 SLC9A6Q92581 669 aa11.82□□□□□ -0.52
LIMCH1-213ENST00000511496 EXT2Q93063 718 aa11.82□□□□□ -0.52
LIMCH1-213ENST00000511496 REPS1Q96D71 796 aa11.82□□□□□ -0.52
LIMCH1-213ENST00000511496 CLEC4MQ9H2X3 399 aaPredicted RBP11.82□□□□□ -0.52
LIMCH1-213ENST00000511496 RAB23Q9ULC3 237 aa11.82□□□□□ -0.52
LIMCH1-213ENST00000511496 ZNF541Q9H0D2 1346 aa11.82□□□□□ -0.52
LIMCH1-213ENST00000511496 ASS1P00966 412 aaKnown RBP11.82□□□□□ -0.52
LIMCH1-213ENST00000511496 ANXA6P08133 673 aa11.82□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 32.1 ms