RNA–Protein interactions for RNA: ENST00000479532.1

SF3B1-209, Transcript of splicing factor 3b subunit 1, humanhuman

TSL 2

Gene SF3B1, Length 587 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-209ENST00000479532 STYXQ8WUJ0 223 aa6.12□□□□□ -1.43
SF3B1-209ENST00000479532 DNASE2BQ8WZ79 361 aa6.12□□□□□ -1.43
SF3B1-209ENST00000479532 CPT1BQ92523 772 aa6.12□□□□□ -1.43
SF3B1-209ENST00000479532 PIGKQ92643 395 aa6.12□□□□□ -1.43
SF3B1-209ENST00000479532 KLK6Q92876 244 aa6.12□□□□□ -1.43
SF3B1-209ENST00000479532 CAVIN3Q969G5 261 aa6.12□□□□□ -1.43
SF3B1-209ENST00000479532 TBRG4Q969Z0 631 aaKnown RBP eCLIP6.12□□□□□ -1.43
SF3B1-209ENST00000479532 DTD2Q96FN9 168 aa6.12□□□□□ -1.43
SF3B1-209ENST00000479532 NSMCE3Q96MG7 304 aa6.12□□□□□ -1.43
SF3B1-209ENST00000479532 SMC6Q96SB8 1091 aa6.12□□□□□ -1.43
SF3B1-209ENST00000479532 TTC1Q99614 292 aa6.12□□□□□ -1.43
SF3B1-209ENST00000479532 C19orf43Q9BQ61 176 aa6.12□□□□□ -1.43
SF3B1-209ENST00000479532 ERP44Q9BS26 406 aa6.12□□□□□ -1.43
SF3B1-209ENST00000479532 TRIM51Q9BSJ1 452 aa6.12□□□□□ -1.43
SF3B1-209ENST00000479532 SPATA16Q9BXB7 569 aa6.12□□□□□ -1.43
SF3B1-209ENST00000479532 NUSAP1Q9BXS6 441 aaKnown RBP6.12□□□□□ -1.43
SF3B1-209ENST00000479532 FAM129AQ9BZQ8 928 aa6.12□□□□□ -1.43
SF3B1-209ENST00000479532 TRIM31Q9BZY9 425 aa6.12□□□□□ -1.43
SF3B1-209ENST00000479532 IL22Q9GZX6 179 aa6.12□□□□□ -1.43
SF3B1-209ENST00000479532 CASS4Q9NQ75 786 aa6.12□□□□□ -1.43
SF3B1-209ENST00000479532 PRDM7Q9NQW5 492 aa6.12□□□□□ -1.43
SF3B1-209ENST00000479532 FAM114A2Q9NRY5 505 aa6.12□□□□□ -1.43
SF3B1-209ENST00000479532 EIF2B4Q9UI10 523 aaKnown RBP6.12□□□□□ -1.43
SF3B1-209ENST00000479532 APPL1Q9UKG1 709 aa6.12□□□□□ -1.43
SF3B1-209ENST00000479532 TNRC6BQ9UPQ9 1833 aaKnown RBP6.12□□□□□ -1.43
SF3B1-209ENST00000479532 ZFR2Q9UPR6 939 aaKnown RBP6.12□□□□□ -1.43
SF3B1-209ENST00000479532 SHOC2Q9UQ13 582 aa6.12□□□□□ -1.43
SF3B1-209ENST00000479532 COQ6Q9Y2Z9 468 aa6.12□□□□□ -1.43
SF3B1-209ENST00000479532 NEU2Q9Y3R4 380 aa6.12□□□□□ -1.43
SF3B1-209ENST00000479532 HS3ST3A1Q9Y663 406 aa6.12□□□□□ -1.43
SF3B1-209ENST00000479532 MUC3AQ02505 3323 aa6.12□□□□□ -1.43
SF3B1-209ENST00000479532 TRIOO75962 3097 aa6.12□□□□□ -1.43
SF3B1-209ENST00000479532 CCDC162PA2VCL2 907 aa6.11□□□□□ -1.43
SF3B1-209ENST00000479532 EME2A4GXA9 379 aaPredicted RBP6.11□□□□□ -1.43
SF3B1-209ENST00000479532 SDR42E2A6NKP2 422 aa6.11□□□□□ -1.43
SF3B1-209ENST00000479532 GOLGA8MH3BSY2 632 aa6.11□□□□□ -1.43
SF3B1-209ENST00000479532 CACNB4O00305 520 aaPredicted RBP6.11□□□□□ -1.43
SF3B1-209ENST00000479532 PFDN6O15212 129 aa6.11□□□□□ -1.43
SF3B1-209ENST00000479532 LRP3O75074 770 aa6.11□□□□□ -1.43
SF3B1-209ENST00000479532 CFIP05156 583 aa6.11□□□□□ -1.43
SF3B1-209ENST00000479532 C1SP09871 688 aa6.11□□□□□ -1.43
SF3B1-209ENST00000479532 CPA3P15088 417 aa6.11□□□□□ -1.43
SF3B1-209ENST00000479532 TPH1P17752 444 aa6.11□□□□□ -1.43
SF3B1-209ENST00000479532 LHCGRP22888 699 aa6.11□□□□□ -1.43
SF3B1-209ENST00000479532 KELP23276 732 aa6.11□□□□□ -1.43
SF3B1-209ENST00000479532 CCND1P24385 295 aa6.11□□□□□ -1.43
SF3B1-209ENST00000479532 ADRA1DP25100 572 aa6.11□□□□□ -1.43
SF3B1-209ENST00000479532 CD38P28907 300 aa6.11□□□□□ -1.43
SF3B1-209ENST00000479532 HMGCLP35914 325 aa6.11□□□□□ -1.43
SF3B1-209ENST00000479532 PPARGP37231 505 aaPredicted RBP6.11□□□□□ -1.43
SF3B1-209ENST00000479532 MPLP40238 635 aa6.11□□□□□ -1.43
SF3B1-209ENST00000479532 PTGER3P43115 390 aa6.11□□□□□ -1.43
SF3B1-209ENST00000479532 GPR1P46091 355 aa6.11□□□□□ -1.43
SF3B1-209ENST00000479532 SPINT3P49223 89 aa6.11□□□□□ -1.43
SF3B1-209ENST00000479532 THOP1P52888 689 aa6.11□□□□□ -1.43
SF3B1-209ENST00000479532 ITGA8P53708 1063 aa6.11□□□□□ -1.43
SF3B1-209ENST00000479532 ATXN3P54252 364 aaPredicted RBP6.11□□□□□ -1.43
SF3B1-209ENST00000479532 SESN3P58005 492 aa6.11□□□□□ -1.43
SF3B1-209ENST00000479532 DCDC1P59894 354 aa6.11□□□□□ -1.43
SF3B1-209ENST00000479532 YPEL5P62699 121 aa6.11□□□□□ -1.43
SF3B1-209ENST00000479532 VSNL1P62760 191 aa6.11□□□□□ -1.43
SF3B1-209ENST00000479532 GNGT1P63211 74 aa6.11□□□□□ -1.43
SF3B1-209ENST00000479532 PRAMEP78395 509 aa6.11□□□□□ -1.43
SF3B1-209ENST00000479532 PHEXP78562 749 aa6.11□□□□□ -1.43
SF3B1-209ENST00000479532 SEMG2Q02383 582 aa6.11□□□□□ -1.43
SF3B1-209ENST00000479532 IKZF1Q13422 519 aa6.11□□□□□ -1.43
SF3B1-209ENST00000479532 ITGA9Q13797 1035 aa6.11□□□□□ -1.43
SF3B1-209ENST00000479532 IHHQ14623 411 aa6.11□□□□□ -1.43
SF3B1-209ENST00000479532 IRF4Q15306 451 aa6.11□□□□□ -1.43
SF3B1-209ENST00000479532 LPAL2Q16609 132 aa6.11□□□□□ -1.43
SF3B1-209ENST00000479532 KBTBD12Q3ZCT8 623 aa6.11□□□□□ -1.43
SF3B1-209ENST00000479532 DUPD1Q68J44 220 aa6.11□□□□□ -1.43
SF3B1-209ENST00000479532 PDPK2PQ6A1A2 396 aa6.11□□□□□ -1.43
SF3B1-209ENST00000479532 ESRP1Q6NXG1 681 aaKnown RBP6.11□□□□□ -1.43
SF3B1-209ENST00000479532 IL27RAQ6UWB1 636 aa6.11□□□□□ -1.43
SF3B1-209ENST00000479532 KYAT3Q6YP21 454 aaKnown RBP6.11□□□□□ -1.43
SF3B1-209ENST00000479532 CENPUQ71F23 418 aa6.11□□□□□ -1.43
SF3B1-209ENST00000479532 HSD11B1LQ7Z5J1 315 aa6.11□□□□□ -1.43
SF3B1-209ENST00000479532 PTAR1Q7Z6K3 402 aaPredicted RBP6.11□□□□□ -1.43
SF3B1-209ENST00000479532 IQCHQ86VS3 1027 aa6.11□□□□□ -1.43
SF3B1-209ENST00000479532 IFT20Q8IY31 132 aa6.11□□□□□ -1.43
SF3B1-209ENST00000479532 MREGQ8N565 214 aa6.11□□□□□ -1.43
SF3B1-209ENST00000479532 ZCCHC9Q8N567 271 aaKnown RBP6.11□□□□□ -1.43
SF3B1-209ENST00000479532 OXR1Q8N573 874 aa6.11□□□□□ -1.43
SF3B1-209ENST00000479532 NAT8LQ8N9F0 302 aa6.11□□□□□ -1.43
SF3B1-209ENST00000479532 TMEM52Q8NDY8 209 aa6.11□□□□□ -1.43
SF3B1-209ENST00000479532 PEX13Q92968 403 aa6.11□□□□□ -1.43
SF3B1-209ENST00000479532 VOPP1Q96AW1 172 aa6.11□□□□□ -1.43
SF3B1-209ENST00000479532 AP2M1Q96CW1 435 aa6.11□□□□□ -1.43
SF3B1-209ENST00000479532 LRRC39Q96DD0 335 aa6.11□□□□□ -1.43
SF3B1-209ENST00000479532 COQ10AQ96MF6 247 aa6.11□□□□□ -1.43
SF3B1-209ENST00000479532 SERPINB12Q96P63 405 aa6.11□□□□□ -1.43
SF3B1-209ENST00000479532 RANBP9Q96S59 729 aa6.11□□□□□ -1.43
SF3B1-209ENST00000479532 MYOCQ99972 504 aa6.11□□□□□ -1.43
SF3B1-209ENST00000479532 NAT9Q9BTE0 207 aa6.11□□□□□ -1.43
SF3B1-209ENST00000479532 LRRC1Q9BTT6 524 aa6.11□□□□□ -1.43
SF3B1-209ENST00000479532 ZSCAN5AQ9BUG6 496 aa6.11□□□□□ -1.43
SF3B1-209ENST00000479532 ZDHHC5Q9C0B5 715 aa6.11□□□□□ -1.43
SF3B1-209ENST00000479532 DPH5Q9H2P9 285 aa6.11□□□□□ -1.43
SF3B1-209ENST00000479532 FAM83DQ9H4H8 585 aa6.11□□□□□ -1.43
Retrieved 100 of 20,778 RNA–protein pairs in 19.8 ms