RNA–Protein interactions for RNA: ENST00000468211.6

PTCH1-210, Transcript of patched 1, humanhuman

TSL 1 (best) BASIC

Gene PTCH1, Length 1,254 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-210ENST00000468211 RPA4Q13156 261 aa23.73■■□□□ 1.39
PTCH1-210ENST00000468211 CCDC38Q502W7 563 aa23.73■■□□□ 1.39
PTCH1-210ENST00000468211 NAPRTQ6XQN6 538 aa23.73■■□□□ 1.39
PTCH1-210ENST00000468211 AMIGO1Q86WK6 493 aa23.73■■□□□ 1.39
PTCH1-210ENST00000468211 ENDOVQ8N8Q3 282 aaKnown RBP23.73■■□□□ 1.39
PTCH1-210ENST00000468211 OR5AR1Q8NGP9 310 aa23.73■■□□□ 1.39
PTCH1-210ENST00000468211 ADAMTS17Q8TE56 1095 aa23.73■■□□□ 1.39
PTCH1-210ENST00000468211 THAP4Q8WY91 577 aa23.73■■□□□ 1.39
PTCH1-210ENST00000468211 ATG4AQ8WYN0 398 aa23.73■■□□□ 1.39
PTCH1-210ENST00000468211 CPT1BQ92523 772 aa23.73■■□□□ 1.39
PTCH1-210ENST00000468211 MIB2Q96AX9 1013 aa23.73■■□□□ 1.39
PTCH1-210ENST00000468211 VPS37BQ9H9H4 285 aa23.73■■□□□ 1.39
PTCH1-210ENST00000468211 PCMTD2Q9NV79 361 aa23.73■■□□□ 1.39
PTCH1-210ENST00000468211 ICKQ9UPZ9 632 aa23.73■■□□□ 1.39
PTCH1-210ENST00000468211 MIF4GDA9UHW6 222 aaKnown RBP23.72■■□□□ 1.39
PTCH1-210ENST00000468211 KLK3P07288 261 aaPredicted RBP23.72■■□□□ 1.39
PTCH1-210ENST00000468211 TPBGLP0DKB5 382 aa23.72■■□□□ 1.39
PTCH1-210ENST00000468211 PTGIRP43119 386 aa23.72■■□□□ 1.39
PTCH1-210ENST00000468211 GSDMDP57764 484 aa23.72■■□□□ 1.39
PTCH1-210ENST00000468211 BRD3Q15059 726 aa23.72■■□□□ 1.39
PTCH1-210ENST00000468211 P3H1Q32P28 736 aa23.72■■□□□ 1.39
PTCH1-210ENST00000468211 CDHR3Q6ZTQ4 885 aa23.72■■□□□ 1.39
PTCH1-210ENST00000468211 OR52K1Q8NGK4 314 aa23.72■■□□□ 1.39
PTCH1-210ENST00000468211 SEC14L1Q92503 715 aa23.72■■□□□ 1.39
PTCH1-210ENST00000468211 CLIP3Q96DZ5 547 aa23.72■■□□□ 1.39
PTCH1-210ENST00000468211 FANCEQ9HB96 536 aa23.72■■□□□ 1.39
PTCH1-210ENST00000468211 ACTR10Q9NZ32 417 aa23.72■■□□□ 1.39
PTCH1-210ENST00000468211 CCDC162PA2VCL2 907 aa23.71■■□□□ 1.39
PTCH1-210ENST00000468211 CLEC18AA5D8T8 446 aa23.71■■□□□ 1.39
PTCH1-210ENST00000468211 MSL3P1P0C860 447 aa23.71■■□□□ 1.39
PTCH1-210ENST00000468211 MSNP26038 577 aaKnown RBP23.71■■□□□ 1.39
PTCH1-210ENST00000468211 FOXN2P32314 431 aa23.71■■□□□ 1.39
PTCH1-210ENST00000468211 UBAP2LQ14157 1087 aaKnown RBP23.71■■□□□ 1.39
PTCH1-210ENST00000468211 PTCHD3Q3KNS1 767 aa23.71■■□□□ 1.39
PTCH1-210ENST00000468211 FAM198BQ6UWH4 519 aa23.71■■□□□ 1.39
PTCH1-210ENST00000468211 CLEC18BQ6UXF7 455 aa23.71■■□□□ 1.39
PTCH1-210ENST00000468211 TRIM73Q86UV7 250 aa23.71■■□□□ 1.39
PTCH1-210ENST00000468211 GAS2L3Q86XJ1 694 aa23.71■■□□□ 1.39
PTCH1-210ENST00000468211 CLEC18CQ8NCF0 446 aa23.71■■□□□ 1.39
PTCH1-210ENST00000468211 HES6Q96HZ4 224 aa23.71■■□□□ 1.39
PTCH1-210ENST00000468211 ACTR5Q9H9F9 607 aaPredicted RBP23.71■■□□□ 1.39
PTCH1-210ENST00000468211 FAM60AQ9NP50 221 aa23.71■■□□□ 1.39
PTCH1-210ENST00000468211 CAPN6Q9Y6Q1 641 aa23.71■■□□□ 1.39
PTCH1-210ENST00000468211 USP9XQ93008 2570 aaPredicted RBP23.71■■□□□ 1.39
PTCH1-210ENST00000468211 C2orf74A8MZ97 194 aa23.7■■□□□ 1.38
PTCH1-210ENST00000468211 HCRTR1O43613 425 aa23.7■■□□□ 1.38
PTCH1-210ENST00000468211 AP2A2O94973 939 aa23.7■■□□□ 1.38
PTCH1-210ENST00000468211 RAB40ALP0C0E4 278 aa23.7■■□□□ 1.38
PTCH1-210ENST00000468211 CYP2A7P20853 494 aa23.7■■□□□ 1.38
PTCH1-210ENST00000468211 ACADLP28330 430 aa23.7■■□□□ 1.38
PTCH1-210ENST00000468211 NSG1P42857 185 aa23.7■■□□□ 1.38
PTCH1-210ENST00000468211 CCL11P51671 97 aa23.7■■□□□ 1.38
PTCH1-210ENST00000468211 KIF5AQ12840 1032 aa23.7■■□□□ 1.38
PTCH1-210ENST00000468211 SYTL1Q8IYJ3 562 aa23.7■■□□□ 1.38
PTCH1-210ENST00000468211 SYCE1Q8N0S2 351 aa23.7■■□□□ 1.38
PTCH1-210ENST00000468211 NLNQ9BYT8 704 aa23.7■■□□□ 1.38
PTCH1-210ENST00000468211 ING2Q9H160 280 aa23.7■■□□□ 1.38
PTCH1-210ENST00000468211 SLC2A6Q9UGQ3 507 aa23.7■■□□□ 1.38
PTCH1-210ENST00000468211 TCFL5Q9UL49 500 aa23.7■■□□□ 1.38
PTCH1-210ENST00000468211 BHMG1C9JSJ3 638 aaPredicted RBP23.69■■□□□ 1.38
PTCH1-210ENST00000468211 PSMD3O43242 534 aa23.69■■□□□ 1.38
PTCH1-210ENST00000468211 GRIA1P42261 906 aa23.69■■□□□ 1.38
PTCH1-210ENST00000468211 ITIH4Q14624 930 aa23.69■■□□□ 1.38
PTCH1-210ENST00000468211 ZIC1Q15915 447 aa23.69■■□□□ 1.38
PTCH1-210ENST00000468211 ZNF449Q6P9G9 518 aa23.69■■□□□ 1.38
PTCH1-210ENST00000468211 SPESP1Q6UW49 350 aa23.69■■□□□ 1.38
PTCH1-210ENST00000468211 PACS1Q6VY07 963 aa23.69■■□□□ 1.38
PTCH1-210ENST00000468211 UNC5AQ6ZN44 842 aa23.69■■□□□ 1.38
PTCH1-210ENST00000468211 PRUNE1Q86TP1 453 aa23.69■■□□□ 1.38
PTCH1-210ENST00000468211 OR13J1Q8NGT2 312 aa23.69■■□□□ 1.38
PTCH1-210ENST00000468211 FLVCR1-AS1Q8TAF5 88 aa23.69■■□□□ 1.38
PTCH1-210ENST00000468211 ELMO1Q92556 727 aa23.69■■□□□ 1.38
PTCH1-210ENST00000468211 SLC25A23Q9BV35 468 aa23.69■■□□□ 1.38
PTCH1-210ENST00000468211 SYTL2Q9HCH5 934 aa23.69■■□□□ 1.38
PTCH1-210ENST00000468211 MLXIPLQ9NP71 852 aa23.69■■□□□ 1.38
PTCH1-210ENST00000468211 SPHK1Q9NYA1 384 aa23.69■■□□□ 1.38
PTCH1-210ENST00000468211 ANKMY1Q9P2S6 941 aa23.69■■□□□ 1.38
PTCH1-210ENST00000468211 SNX7Q9UNH6 387 aa23.69■■□□□ 1.38
PTCH1-210ENST00000468211 UTP20O75691 2785 aaKnown RBP23.69■■□□□ 1.38
PTCH1-210ENST00000468211 SLC5A10A0PJK1 596 aa23.68■■□□□ 1.38
PTCH1-210ENST00000468211 LIN7AO14910 233 aaPredicted RBP23.68■■□□□ 1.38
PTCH1-210ENST00000468211 ZNF749O43361 778 aa23.68■■□□□ 1.38
PTCH1-210ENST00000468211 OR1I1O60431 355 aa23.68■■□□□ 1.38
PTCH1-210ENST00000468211 CTSBP07858 339 aa23.68■■□□□ 1.38
PTCH1-210ENST00000468211 GSTM1P09488 218 aa23.68■■□□□ 1.38
PTCH1-210ENST00000468211 UGT2B7P16662 529 aa23.68■■□□□ 1.38
PTCH1-210ENST00000468211 CD97P48960 835 aa23.68■■□□□ 1.38
PTCH1-210ENST00000468211 GSTM4Q03013 218 aa23.68■■□□□ 1.38
PTCH1-210ENST00000468211 ZNF385CQ66K41 422 aaPredicted RBP23.68■■□□□ 1.38
PTCH1-210ENST00000468211 ZNF778Q96MU6 729 aa23.68■■□□□ 1.38
PTCH1-210ENST00000468211 ALS2CR12Q96Q35 445 aa23.68■■□□□ 1.38
PTCH1-210ENST00000468211 OR2A14Q96R47 310 aa23.68■■□□□ 1.38
PTCH1-210ENST00000468211 ETNK1Q9HBU6 452 aa23.68■■□□□ 1.38
PTCH1-210ENST00000468211 ACSS2Q9NR19 701 aa23.68■■□□□ 1.38
PTCH1-210ENST00000468211 SERTAD3Q9UJW9 196 aa23.68■■□□□ 1.38
PTCH1-210ENST00000468211 ASF1AQ9Y294 204 aa23.68■■□□□ 1.38
PTCH1-210ENST00000468211 SHANK1Q9Y566 2161 aa23.68■■□□□ 1.38
PTCH1-210ENST00000468211 H3BMH7 237 aa23.67■■□□□ 1.38
PTCH1-210ENST00000468211 GABRA4P48169 554 aa23.67■■□□□ 1.38
PTCH1-210ENST00000468211 ITGA1P56199 1179 aa23.67■■□□□ 1.38
Retrieved 100 of 20,778 RNA–protein pairs in 23.3 ms