RNA–Protein interactions for RNA: ENST00000462815.5

PTPN7-204, Transcript of protein tyrosine phosphatase, non-receptor type 7, human

TSL 2

Gene PTPN7, Length 1,147 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PTPN7-204	ENST00000462815	DEF6	Q9H4E7	631 aa		10.8	□□□□□ -0.68
PTPN7-204	ENST00000462815	XKR8	Q9H6D3	395 aa		10.8	□□□□□ -0.68
PTPN7-204	ENST00000462815	ZNF552	Q9H707	407 aa	Predicted RBP	10.8	□□□□□ -0.68
PTPN7-204	ENST00000462815	FANCE	Q9HB96	536 aa		10.8	□□□□□ -0.68
PTPN7-204	ENST00000462815	ZBTB20	Q9HC78	741 aa	Predicted RBP	10.8	□□□□□ -0.68
PTPN7-204	ENST00000462815	SLAMF7	Q9NQ25	335 aa		10.8	□□□□□ -0.68
PTPN7-204	ENST00000462815	ASF1B	Q9NVP2	202 aa		10.8	□□□□□ -0.68
PTPN7-204	ENST00000462815	ACTR10	Q9NZ32	417 aa		10.8	□□□□□ -0.68
PTPN7-204	ENST00000462815	MAP10	Q9P2G4	905 aa		10.8	□□□□□ -0.68
PTPN7-204	ENST00000462815	INTU	Q9ULD6	942 aa		10.8	□□□□□ -0.68
PTPN7-204	ENST00000462815	ICK	Q9UPZ9	632 aa		10.8	□□□□□ -0.68
PTPN7-204	ENST00000462815	HEBP2	Q9Y5Z4	205 aa		10.8	□□□□□ -0.68
PTPN7-204	ENST00000462815	ALG6	Q9Y672	507 aa		10.8	□□□□□ -0.68
PTPN7-204	ENST00000462815	TEP1	Q99973	2627 aa	Known RBP	10.8	□□□□□ -0.68
PTPN7-204	ENST00000462815	TACC2	O95359	2948 aa		10.8	□□□□□ -0.68
PTPN7-204	ENST00000462815	GSAP	A4D1B5	854 aa		10.79	□□□□□ -0.68
PTPN7-204	ENST00000462815	ENO4	A6NNW6	628 aa		10.79	□□□□□ -0.68
PTPN7-204	ENST00000462815		E7EQ34	232 aa		10.79	□□□□□ -0.68
PTPN7-204	ENST00000462815		H7C0S8	307 aa		10.79	□□□□□ -0.68
PTPN7-204	ENST00000462815	APOC4-APOC2	K7ER74	178 aa		10.79	□□□□□ -0.68
PTPN7-204	ENST00000462815	SPOP	O43791	374 aa		10.79	□□□□□ -0.68
PTPN7-204	ENST00000462815	APOC2	P02655	101 aa		10.79	□□□□□ -0.68
PTPN7-204	ENST00000462815	UMOD	P07911	640 aa		10.79	□□□□□ -0.68
PTPN7-204	ENST00000462815	ITGAX	P20702	1163 aa		10.79	□□□□□ -0.68
PTPN7-204	ENST00000462815	CYP2A7	P20853	494 aa		10.79	□□□□□ -0.68
PTPN7-204	ENST00000462815	PSMB4	P28070	264 aa		10.79	□□□□□ -0.68
PTPN7-204	ENST00000462815	HADHA	P40939	763 aa		10.79	□□□□□ -0.68
PTPN7-204	ENST00000462815	GEM	P55040	296 aa		10.79	□□□□□ -0.68
PTPN7-204	ENST00000462815	RRAD	P55042	308 aa		10.79	□□□□□ -0.68
PTPN7-204	ENST00000462815	TPM4	P67936	248 aa		10.79	□□□□□ -0.68
PTPN7-204	ENST00000462815	PRKAA1	Q13131	559 aa		10.79	□□□□□ -0.68
PTPN7-204	ENST00000462815	TRIM14	Q14142	442 aa		10.79	□□□□□ -0.68
PTPN7-204	ENST00000462815	MYBPC3	Q14896	1274 aa		10.79	□□□□□ -0.68
PTPN7-204	ENST00000462815	DCAF10	Q5QP82	559 aa		10.79	□□□□□ -0.68
PTPN7-204	ENST00000462815	RHBDD2	Q6NTF9	364 aa		10.79	□□□□□ -0.68
PTPN7-204	ENST00000462815	SPESP1	Q6UW49	350 aa		10.79	□□□□□ -0.68
PTPN7-204	ENST00000462815	PPP1R32	Q7Z5V6	425 aa		10.79	□□□□□ -0.68
PTPN7-204	ENST00000462815	SNX20	Q7Z614	316 aa		10.79	□□□□□ -0.68
PTPN7-204	ENST00000462815	AMIGO1	Q86WK6	493 aa		10.79	□□□□□ -0.68
PTPN7-204	ENST00000462815	VSTM4	Q8IW00	320 aa		10.79	□□□□□ -0.68
PTPN7-204	ENST00000462815	C19orf47	Q8N9M1	422 aa	Known RBP	10.79	□□□□□ -0.68
PTPN7-204	ENST00000462815	PHC3	Q8NDX5	983 aa		10.79	□□□□□ -0.68
PTPN7-204	ENST00000462815	PRR7	Q8TB68	274 aa		10.79	□□□□□ -0.68
PTPN7-204	ENST00000462815	OR2A14	Q96R47	310 aa		10.79	□□□□□ -0.68
PTPN7-204	ENST00000462815	COPS8	Q99627	209 aa		10.79	□□□□□ -0.68
PTPN7-204	ENST00000462815	SLC29A3	Q9BZD2	475 aa		10.79	□□□□□ -0.68
PTPN7-204	ENST00000462815	FAM96A	Q9H5X1	160 aa		10.79	□□□□□ -0.68
PTPN7-204	ENST00000462815	ARNT2	Q9HBZ2	717 aa		10.79	□□□□□ -0.68
PTPN7-204	ENST00000462815	SLC22A11	Q9NSA0	550 aa		10.79	□□□□□ -0.68
PTPN7-204	ENST00000462815	SPHK1	Q9NYA1	384 aa		10.79	□□□□□ -0.68
PTPN7-204	ENST00000462815	B3GNT3	Q9Y2A9	372 aa		10.79	□□□□□ -0.68
PTPN7-204	ENST00000462815	PCDHGA10	Q9Y5H3	936 aa		10.79	□□□□□ -0.68
PTPN7-204	ENST00000462815	MDC1	Q14676	2089 aa	Known RBP	10.78	□□□□□ -0.68
PTPN7-204	ENST00000462815	CCDC66	A2RUB6	948 aa		10.78	□□□□□ -0.68
PTPN7-204	ENST00000462815	C2orf81	A6NN90	581 aa		10.78	□□□□□ -0.68
PTPN7-204	ENST00000462815	C2orf74	A8MZ97	194 aa		10.78	□□□□□ -0.68
PTPN7-204	ENST00000462815	E2F3	O00716	465 aa		10.78	□□□□□ -0.68
PTPN7-204	ENST00000462815	UGT2B7	P16662	529 aa		10.78	□□□□□ -0.68
PTPN7-204	ENST00000462815	PSMA3	P25788	255 aa		10.78	□□□□□ -0.68
PTPN7-204	ENST00000462815	ACRV1	P26436	265 aa		10.78	□□□□□ -0.68
PTPN7-204	ENST00000462815	VARS	P26640	1264 aa	Known RBP	10.78	□□□□□ -0.68
PTPN7-204	ENST00000462815	ACADL	P28330	430 aa		10.78	□□□□□ -0.68
PTPN7-204	ENST00000462815	PEBP1	P30086	187 aa	Known RBP	10.78	□□□□□ -0.68
PTPN7-204	ENST00000462815	OTX2	P32243	289 aa		10.78	□□□□□ -0.68
PTPN7-204	ENST00000462815	RPA4	Q13156	261 aa		10.78	□□□□□ -0.68
PTPN7-204	ENST00000462815	GSE1	Q14687	1217 aa		10.78	□□□□□ -0.68
PTPN7-204	ENST00000462815	SSPN	Q14714	243 aa		10.78	□□□□□ -0.68
PTPN7-204	ENST00000462815	DEFB110	Q30KQ9	67 aa		10.78	□□□□□ -0.68
PTPN7-204	ENST00000462815	KCTD11	Q693B1	232 aa		10.78	□□□□□ -0.68
PTPN7-204	ENST00000462815		Q6ZS92	163 aa		10.78	□□□□□ -0.68
PTPN7-204	ENST00000462815	CUZD1	Q86UP6	607 aa		10.78	□□□□□ -0.68
PTPN7-204	ENST00000462815	TRIM73	Q86UV7	250 aa		10.78	□□□□□ -0.68
PTPN7-204	ENST00000462815	RAB43	Q86YS6	212 aa		10.78	□□□□□ -0.68
PTPN7-204	ENST00000462815	PIANP	Q8IYJ0	282 aa		10.78	□□□□□ -0.68
PTPN7-204	ENST00000462815	IQCK	Q8N0W5	287 aa		10.78	□□□□□ -0.68
PTPN7-204	ENST00000462815	GALNT16	Q8N428	558 aa		10.78	□□□□□ -0.68
PTPN7-204	ENST00000462815	CISD2	Q8N5K1	135 aa	Known RBP	10.78	□□□□□ -0.68
PTPN7-204	ENST00000462815	OR2Y1	Q8NGV0	311 aa		10.78	□□□□□ -0.68
PTPN7-204	ENST00000462815	ULK4	Q96C45	1275 aa		10.78	□□□□□ -0.68
PTPN7-204	ENST00000462815	SGSM3	Q96HU1	749 aa		10.78	□□□□□ -0.68
PTPN7-204	ENST00000462815	RBM41	Q96IZ5	413 aa	Known RBP	10.78	□□□□□ -0.68
PTPN7-204	ENST00000462815	CCDC42	Q96M95	316 aa		10.78	□□□□□ -0.68
PTPN7-204	ENST00000462815	FERD3L	Q96RJ6	166 aa		10.78	□□□□□ -0.68
PTPN7-204	ENST00000462815	HGH1	Q9BTY7	390 aa		10.78	□□□□□ -0.68
PTPN7-204	ENST00000462815	SPRTN	Q9H040	489 aa	Predicted RBP	10.78	□□□□□ -0.68
PTPN7-204	ENST00000462815	MVB12B	Q9H7P6	319 aa		10.78	□□□□□ -0.68
PTPN7-204	ENST00000462815	ZDHHC3	Q9NYG2	299 aa		10.78	□□□□□ -0.68
PTPN7-204	ENST00000462815	CRLS1	Q9UJA2	301 aa		10.78	□□□□□ -0.68
PTPN7-204	ENST00000462815	SERTAD3	Q9UJW9	196 aa		10.78	□□□□□ -0.68
PTPN7-204	ENST00000462815	TFR2	Q9UP52	801 aa		10.78	□□□□□ -0.68
PTPN7-204	ENST00000462815	CSAG2	Q9Y5P2	127 aa		10.78	□□□□□ -0.68
PTPN7-204	ENST00000462815	ADGRG4	Q8IZF6	3080 aa		10.78	□□□□□ -0.68
PTPN7-204	ENST00000462815	CROCC	Q5TZA2	2017 aa		10.77	□□□□□ -0.68
PTPN7-204	ENST00000462815		C9J4A7	227 aa		10.77	□□□□□ -0.69
PTPN7-204	ENST00000462815	GOLGA6L19	H0YKK7	550 aa		10.77	□□□□□ -0.69
PTPN7-204	ENST00000462815	ANXA9	O76027	345 aa		10.77	□□□□□ -0.69
PTPN7-204	ENST00000462815	ZRANB2	O95218	330 aa	Known RBP eCLIP	10.77	□□□□□ -0.69
PTPN7-204	ENST00000462815	HBQ1	P09105	142 aa		10.77	□□□□□ -0.69
PTPN7-204	ENST00000462815	MC4R	P32245	332 aa		10.77	□□□□□ -0.69
PTPN7-204	ENST00000462815	TMPRSS15	P98073	1019 aa		10.77	□□□□□ -0.69

Retrieved 100 of 20,778 RNA–protein pairs in 22.7 ms