RNA–Protein interactions for RNA: ENST00000460593.1

CPSF3-202, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

TSL 1 (best) BASIC

Gene CPSF3, Length 3,157 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-202ENST00000460593 M0QX08 132 aa11.49□□□□□ -0.57
CPSF3-202ENST00000460593 ERVH48-1M5A8F1 160 aa11.49□□□□□ -0.57
CPSF3-202ENST00000460593 CD3EAPO15446 510 aaKnown RBP11.49□□□□□ -0.57
CPSF3-202ENST00000460593 GPR39O43194 453 aa11.49□□□□□ -0.57
CPSF3-202ENST00000460593 DNAJB2P25686 324 aa11.49□□□□□ -0.57
CPSF3-202ENST00000460593 GRK3P35626 688 aa11.49□□□□□ -0.57
CPSF3-202ENST00000460593 RPL38P63173 70 aaKnown RBP11.49□□□□□ -0.57
CPSF3-202ENST00000460593 ZNF181Q2M3W8 571 aa11.49□□□□□ -0.57
CPSF3-202ENST00000460593 SETMARQ53H47 684 aaPredicted RBP11.49□□□□□ -0.57
CPSF3-202ENST00000460593 SPANXN4Q5MJ08 99 aa11.49□□□□□ -0.57
CPSF3-202ENST00000460593 NEK5Q6P3R8 708 aa11.49□□□□□ -0.57
CPSF3-202ENST00000460593 ARMCX2Q7L311 632 aa11.49□□□□□ -0.57
CPSF3-202ENST00000460593 LACC1Q8IV20 430 aa11.49□□□□□ -0.57
CPSF3-202ENST00000460593 OR8H2Q8N162 312 aa11.49□□□□□ -0.57
CPSF3-202ENST00000460593 DNASE1L2Q92874 299 aa11.49□□□□□ -0.57
CPSF3-202ENST00000460593 FCRL2Q96LA5 508 aaPredicted RBP11.49□□□□□ -0.57
CPSF3-202ENST00000460593 FYTTD1Q96QD9 318 aaKnown RBP11.49□□□□□ -0.57
CPSF3-202ENST00000460593 GPR21Q99679 349 aa11.49□□□□□ -0.57
CPSF3-202ENST00000460593 ROGDIQ9GZN7 287 aa11.49□□□□□ -0.57
CPSF3-202ENST00000460593 MRM3Q9HC36 420 aaKnown RBP11.49□□□□□ -0.57
CPSF3-202ENST00000460593 CNGB3Q9NQW8 809 aa11.49□□□□□ -0.57
CPSF3-202ENST00000460593 PCTPQ9UKL6 214 aa11.49□□□□□ -0.57
CPSF3-202ENST00000460593 UBQLN1Q9UMX0 589 aaKnown RBP11.49□□□□□ -0.57
CPSF3-202ENST00000460593 ACTL7AQ9Y615 435 aa11.49□□□□□ -0.57
CPSF3-202ENST00000460593 OR2A25A4D2G3 310 aa11.49□□□□□ -0.57
CPSF3-202ENST00000460593 ZW10O43264 779 aa11.49□□□□□ -0.57
CPSF3-202ENST00000460593 GLP2RO95838 553 aa11.49□□□□□ -0.57
CPSF3-202ENST00000460593 SLC2A4P14672 509 aa11.49□□□□□ -0.57
CPSF3-202ENST00000460593 SCNN1GP51170 649 aa11.49□□□□□ -0.57
CPSF3-202ENST00000460593 HMGCS1Q01581 520 aa11.49□□□□□ -0.57
CPSF3-202ENST00000460593 PWP1Q13610 501 aa11.49□□□□□ -0.57
CPSF3-202ENST00000460593 PTPRRQ15256 657 aa11.49□□□□□ -0.57
CPSF3-202ENST00000460593 TAB1Q15750 504 aa11.49□□□□□ -0.57
CPSF3-202ENST00000460593 AP5B1Q2VPB7 878 aa11.49□□□□□ -0.57
CPSF3-202ENST00000460593 ZMAT1Q5H9K5 638 aa11.49□□□□□ -0.57
CPSF3-202ENST00000460593 ADHFE1Q8IWW8 467 aa11.49□□□□□ -0.57
CPSF3-202ENST00000460593 METTL6Q8TCB7 284 aa11.49□□□□□ -0.57
CPSF3-202ENST00000460593 FUBP1Q96AE4 644 aaKnown RBP11.49□□□□□ -0.57
CPSF3-202ENST00000460593 YME1L1Q96TA2 773 aa11.49□□□□□ -0.57
CPSF3-202ENST00000460593 NUAK2Q9H093 628 aa11.49□□□□□ -0.57
CPSF3-202ENST00000460593 USE1Q9NZ43 259 aa11.49□□□□□ -0.57
CPSF3-202ENST00000460593 DKK3Q9UBP4 350 aa11.49□□□□□ -0.57
CPSF3-202ENST00000460593 PIN4Q9Y237 131 aaKnown RBP11.49□□□□□ -0.57
CPSF3-202ENST00000460593 PCDHGB6Q9Y5F9 930 aa11.49□□□□□ -0.57
CPSF3-202ENST00000460593 COL1A2P08123 1366 aa11.49□□□□□ -0.57
CPSF3-202ENST00000460593 ELOVL7A1L3X0 281 aa11.49□□□□□ -0.57
CPSF3-202ENST00000460593 IQCF5A8MTL0 148 aa11.49□□□□□ -0.57
CPSF3-202ENST00000460593 LDB2O43679 373 aa11.49□□□□□ -0.57
CPSF3-202ENST00000460593 SCO2O43819 266 aa11.49□□□□□ -0.57
CPSF3-202ENST00000460593 ICMTO60725 284 aa11.49□□□□□ -0.57
CPSF3-202ENST00000460593 RYKP34925 604 aa11.49□□□□□ -0.57
CPSF3-202ENST00000460593 HTR3AP46098 478 aa11.49□□□□□ -0.57
CPSF3-202ENST00000460593 SLC27A1Q6PCB7 646 aa11.49□□□□□ -0.57
CPSF3-202ENST00000460593 GPRIN3Q6ZVF9 776 aa11.49□□□□□ -0.57
CPSF3-202ENST00000460593 NEK10Q6ZWH5 1172 aa11.49□□□□□ -0.57
CPSF3-202ENST00000460593 LINC01465Q8N7H1 131 aa11.49□□□□□ -0.57
CPSF3-202ENST00000460593 SIDT2Q8NBJ9 832 aaKnown RBP11.49□□□□□ -0.57
CPSF3-202ENST00000460593 TSPAN18Q96SJ8 248 aa11.49□□□□□ -0.57
CPSF3-202ENST00000460593 ARPC5LQ9BPX5 153 aa11.49□□□□□ -0.57
CPSF3-202ENST00000460593 OR2B2Q9GZK3 357 aa11.49□□□□□ -0.57
CPSF3-202ENST00000460593 MMP28Q9H239 520 aa11.49□□□□□ -0.57
CPSF3-202ENST00000460593 MFSD1Q9H3U5 465 aa11.49□□□□□ -0.57
CPSF3-202ENST00000460593 SP110Q9HB58 689 aa11.49□□□□□ -0.57
CPSF3-202ENST00000460593 FARSBQ9NSD9 589 aaKnown RBP11.49□□□□□ -0.57
CPSF3-202ENST00000460593 CDH9Q9ULB4 789 aa11.49□□□□□ -0.57
CPSF3-202ENST00000460593 TYW5A2RUC4 315 aaKnown RBP11.48□□□□□ -0.57
CPSF3-202ENST00000460593 FAM172BPA6NC97 362 aa11.48□□□□□ -0.57
CPSF3-202ENST00000460593 HAT1O14929 419 aa11.48□□□□□ -0.57
CPSF3-202ENST00000460593 PCDHGA12O60330 932 aa11.48□□□□□ -0.57
CPSF3-202ENST00000460593 CREG1O75629 220 aa11.48□□□□□ -0.57
CPSF3-202ENST00000460593 UROSP10746 265 aa11.48□□□□□ -0.57
CPSF3-202ENST00000460593 ENDOUP21128 410 aaKnown RBP11.48□□□□□ -0.57
CPSF3-202ENST00000460593 GRIK1P39086 918 aa11.48□□□□□ -0.57
CPSF3-202ENST00000460593 FAM189BP81408 668 aa11.48□□□□□ -0.57
CPSF3-202ENST00000460593 SLAMF1Q13291 335 aa11.48□□□□□ -0.57
CPSF3-202ENST00000460593 ABRAXAS2Q15018 415 aa11.48□□□□□ -0.57
CPSF3-202ENST00000460593 ZNF648Q5T619 568 aaPredicted RBP11.48□□□□□ -0.57
CPSF3-202ENST00000460593 TTC29Q8NA56 475 aaPredicted RBP11.48□□□□□ -0.57
CPSF3-202ENST00000460593 TMEM40Q8WWA1 233 aa11.48□□□□□ -0.57
CPSF3-202ENST00000460593 KCTD13Q8WZ19 329 aa11.48□□□□□ -0.57
CPSF3-202ENST00000460593 SDHCQ99643 169 aaPredicted RBP11.48□□□□□ -0.57
CPSF3-202ENST00000460593 SIRT5Q9NXA8 310 aa11.48□□□□□ -0.57
CPSF3-202ENST00000460593 CD274Q9NZQ7 290 aa11.48□□□□□ -0.57
CPSF3-202ENST00000460593 ZIM2Q9NZV7 527 aa11.48□□□□□ -0.57
CPSF3-202ENST00000460593 RNF6Q9Y252 685 aa11.48□□□□□ -0.57
CPSF3-202ENST00000460593 MED16Q9Y2X0 877 aa11.48□□□□□ -0.57
CPSF3-202ENST00000460593 PCDHGB1Q9Y5G3 927 aa11.48□□□□□ -0.57
CPSF3-202ENST00000460593 TSC2P49815 1807 aa11.48□□□□□ -0.57
CPSF3-202ENST00000460593 KDM4FA0A1W2PPD8 638 aa11.48□□□□□ -0.57
CPSF3-202ENST00000460593 ISPDA4D126 451 aa11.48□□□□□ -0.57
CPSF3-202ENST00000460593 KRT87PA6NCN2 255 aa11.48□□□□□ -0.57
CPSF3-202ENST00000460593 C19orf81C9J6K1 198 aa11.48□□□□□ -0.57
CPSF3-202ENST00000460593 SLC16A6O15403 523 aa11.48□□□□□ -0.57
CPSF3-202ENST00000460593 SLC7A4O43246 635 aa11.48□□□□□ -0.57
CPSF3-202ENST00000460593 OR1I1O60431 355 aa11.48□□□□□ -0.57
CPSF3-202ENST00000460593 KERAO60938 352 aa11.48□□□□□ -0.57
CPSF3-202ENST00000460593 NIPSNAP2O75323 286 aa11.48□□□□□ -0.57
CPSF3-202ENST00000460593 WBP4O75554 376 aaKnown RBP11.48□□□□□ -0.57
CPSF3-202ENST00000460593 PTTG1O95997 202 aa11.48□□□□□ -0.57
CPSF3-202ENST00000460593 MMP2P08253 660 aa11.48□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 27.5 ms