RNA–Protein interactions for RNA: ENST00000455596.5

HMGB3-205, Transcript of high mobility group box 3, humanhuman

APPRIS ALT2 TSL 1 (best)

Gene HMGB3, Length 793 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3-205ENST00000455596 CCR7P32248 378 aa20.59■□□□□ 0.89
HMGB3-205ENST00000455596 SHMT2P34897 504 aa20.59■□□□□ 0.89
HMGB3-205ENST00000455596 TERF1P54274 439 aa20.59■□□□□ 0.89
HMGB3-205ENST00000455596 CDC20Q12834 499 aa20.59■□□□□ 0.89
HMGB3-205ENST00000455596 GPS1Q13098 491 aa20.59■□□□□ 0.89
HMGB3-205ENST00000455596 GPR19Q15760 415 aa20.59■□□□□ 0.89
HMGB3-205ENST00000455596 KCTD19Q17RG1 926 aaPredicted RBP20.59■□□□□ 0.89
HMGB3-205ENST00000455596 TTC27Q6P3X3 843 aa20.59■□□□□ 0.89
HMGB3-205ENST00000455596 BORAQ6PGQ7 559 aa20.59■□□□□ 0.89
HMGB3-205ENST00000455596 ZNF605Q86T29 641 aa20.59■□□□□ 0.89
HMGB3-205ENST00000455596 LDB1Q86U70 411 aaPredicted RBP20.59■□□□□ 0.89
HMGB3-205ENST00000455596 OR8K5Q8NH50 307 aa20.59■□□□□ 0.89
HMGB3-205ENST00000455596 OR5K2Q8NHB8 316 aa20.59■□□□□ 0.89
HMGB3-205ENST00000455596 ZNF501Q96CX3 271 aaPredicted RBP20.59■□□□□ 0.89
HMGB3-205ENST00000455596 NRTNQ99748 197 aa20.59■□□□□ 0.89
HMGB3-205ENST00000455596 KIFC1Q9BW19 673 aa20.59■□□□□ 0.89
HMGB3-205ENST00000455596 AP1M1Q9BXS5 423 aa20.59■□□□□ 0.89
HMGB3-205ENST00000455596 FANCEQ9HB96 536 aa20.59■□□□□ 0.89
HMGB3-205ENST00000455596 SYBUQ9NX95 663 aa20.59■□□□□ 0.89
HMGB3-205ENST00000455596 ACTR10Q9NZ32 417 aa20.59■□□□□ 0.89
HMGB3-205ENST00000455596 MARCH4Q9P2E8 410 aaPredicted RBP20.59■□□□□ 0.89
HMGB3-205ENST00000455596 PADI1Q9ULC6 663 aa20.59■□□□□ 0.89
HMGB3-205ENST00000455596 ICKQ9UPZ9 632 aa20.59■□□□□ 0.89
HMGB3-205ENST00000455596 PRMT5O14744 637 aaPredicted RBP20.58■□□□□ 0.89
HMGB3-205ENST00000455596 MAP3K7O43318 606 aa20.58■□□□□ 0.89
HMGB3-205ENST00000455596 KDM1AO60341 852 aa20.58■□□□□ 0.89
HMGB3-205ENST00000455596 PRKAR1AP10644 381 aa20.58■□□□□ 0.89
HMGB3-205ENST00000455596 TCN2P20062 427 aa20.58■□□□□ 0.89
HMGB3-205ENST00000455596 CSE1LP55060 971 aaKnown RBP20.58■□□□□ 0.89
HMGB3-205ENST00000455596 KCNJ11Q14654 390 aa20.58■□□□□ 0.89
HMGB3-205ENST00000455596 CRTC2Q53ET0 693 aaPredicted RBP20.58■□□□□ 0.89
HMGB3-205ENST00000455596 SLC22A15Q8IZD6 547 aa20.58■□□□□ 0.89
HMGB3-205ENST00000455596 ADGRF3Q8IZF5 1079 aa20.58■□□□□ 0.89
HMGB3-205ENST00000455596 SLC35F6Q8N357 371 aa20.58■□□□□ 0.89
HMGB3-205ENST00000455596 MPP5Q8N3R9 675 aa20.58■□□□□ 0.89
HMGB3-205ENST00000455596 ASZ1Q8WWH4 475 aa20.58■□□□□ 0.89
HMGB3-205ENST00000455596 LHX9Q9NQ69 397 aa20.58■□□□□ 0.89
HMGB3-205ENST00000455596 KCND1Q9NSA2 647 aa20.58■□□□□ 0.89
HMGB3-205ENST00000455596 KCND3Q9UK17 655 aa20.58■□□□□ 0.89
HMGB3-205ENST00000455596 TDRKHQ9Y2W6 561 aaKnown RBP20.58■□□□□ 0.89
HMGB3-205ENST00000455596 PCDHB3Q9Y5E6 796 aa20.58■□□□□ 0.89
HMGB3-205ENST00000455596 MRPS18BQ9Y676 258 aaKnown RBP20.58■□□□□ 0.89
HMGB3-205ENST00000455596 ATRXP46100 2492 aa20.58■□□□□ 0.88
HMGB3-205ENST00000455596 PIPSLA2A3N6 862 aa20.57■□□□□ 0.88
HMGB3-205ENST00000455596 IQCF5A8MTL0 148 aa20.57■□□□□ 0.88
HMGB3-205ENST00000455596 PGRMC1O00264 195 aaKnown RBP20.57■□□□□ 0.88
HMGB3-205ENST00000455596 SCRG1O75711 98 aa20.57■□□□□ 0.88
HMGB3-205ENST00000455596 NTRK1P04629 796 aa20.57■□□□□ 0.88
HMGB3-205ENST00000455596 APOA4P06727 396 aa20.57■□□□□ 0.88
HMGB3-205ENST00000455596 ST6GAL1P15907 406 aa20.57■□□□□ 0.88
HMGB3-205ENST00000455596 F8A1P23610 371 aa20.57■□□□□ 0.88
HMGB3-205ENST00000455596 COILP38432 576 aaPredicted RBP20.57■□□□□ 0.88
HMGB3-205ENST00000455596 MAGEA6P43360 314 aa20.57■□□□□ 0.88
HMGB3-205ENST00000455596 HSPA14Q0VDF9 509 aa20.57■□□□□ 0.88
HMGB3-205ENST00000455596 CYP1B1Q16678 543 aa20.57■□□□□ 0.88
HMGB3-205ENST00000455596 DNAJC21Q5F1R6 531 aaKnown RBP20.57■□□□□ 0.88
HMGB3-205ENST00000455596 PTRHD1Q6GMV3 140 aaKnown RBP20.57■□□□□ 0.88
HMGB3-205ENST00000455596 CCDC137Q6PK04 289 aaKnown RBP20.57■□□□□ 0.88
HMGB3-205ENST00000455596 TMEM126BQ8IUX1 230 aa20.57■□□□□ 0.88
HMGB3-205ENST00000455596 OTUD6BQ8N6M0 293 aa20.57■□□□□ 0.88
HMGB3-205ENST00000455596 LKAAEAR1Q8TD35 194 aa20.57■□□□□ 0.88
HMGB3-205ENST00000455596 MFSD3Q96ES6 412 aa20.57■□□□□ 0.88
HMGB3-205ENST00000455596 PANX3Q96QZ0 392 aa20.57■□□□□ 0.88
HMGB3-205ENST00000455596 PITPNM3Q9BZ71 974 aa20.57■□□□□ 0.88
HMGB3-205ENST00000455596 SYTL2Q9HCH5 934 aa20.57■□□□□ 0.88
HMGB3-205ENST00000455596 LATS2Q9NRM7 1088 aa20.57■□□□□ 0.88
HMGB3-205ENST00000455596 GNPTGQ9UJJ9 305 aa20.57■□□□□ 0.88
HMGB3-205ENST00000455596 SOX13Q9UN79 622 aa20.57■□□□□ 0.88
HMGB3-205ENST00000455596 B8ZZF3 427 aa20.56■□□□□ 0.88
HMGB3-205ENST00000455596 TERTO14746 1132 aaKnown RBP20.56■□□□□ 0.88
HMGB3-205ENST00000455596 CPNE3O75131 537 aaKnown RBP20.56■□□□□ 0.88
HMGB3-205ENST00000455596 GPC4O75487 556 aa20.56■□□□□ 0.88
HMGB3-205ENST00000455596 NDUFS3O75489 264 aa20.56■□□□□ 0.88
HMGB3-205ENST00000455596 VAPBO95292 243 aa20.56■□□□□ 0.88
HMGB3-205ENST00000455596 CCR10P46092 362 aa20.56■□□□□ 0.88
HMGB3-205ENST00000455596 TMED2Q15363 201 aa20.56■□□□□ 0.88
HMGB3-205ENST00000455596 ARMC3Q5W041 872 aa20.56■□□□□ 0.88
HMGB3-205ENST00000455596 C16orf46Q6P387 395 aa20.56■□□□□ 0.88
HMGB3-205ENST00000455596 CES3Q6UWW8 571 aa20.56■□□□□ 0.88
HMGB3-205ENST00000455596 UNC5AQ6ZN44 842 aa20.56■□□□□ 0.88
HMGB3-205ENST00000455596 HOOK3Q86VS8 718 aa20.56■□□□□ 0.88
HMGB3-205ENST00000455596 LRRC6Q86X45 466 aa20.56■□□□□ 0.88
HMGB3-205ENST00000455596 KRT222Q8N1A0 295 aa20.56■□□□□ 0.88
HMGB3-205ENST00000455596 TRAPPC9Q96Q05 1148 aa20.56■□□□□ 0.88
HMGB3-205ENST00000455596 OSBPL9Q96SU4 736 aa20.56■□□□□ 0.88
HMGB3-205ENST00000455596 ADNPQ9H2P0 1102 aa20.56■□□□□ 0.88
HMGB3-205ENST00000455596 CDYLQ9Y232 598 aa20.56■□□□□ 0.88
HMGB3-205ENST00000455596 KATNA1O75449 491 aa20.55■□□□□ 0.88
HMGB3-205ENST00000455596 SPTBP11277 2137 aa20.55■□□□□ 0.88
HMGB3-205ENST00000455596 RPS3P23396 243 aaKnown RBP eCLIP20.55■□□□□ 0.88
HMGB3-205ENST00000455596 AOAHP28039 575 aa20.55■□□□□ 0.88
HMGB3-205ENST00000455596 OAS2P29728 719 aaKnown RBP20.55■□□□□ 0.88
HMGB3-205ENST00000455596 DNASE1L3Q13609 305 aa20.55■□□□□ 0.88
HMGB3-205ENST00000455596 MRNIPQ6NTE8 343 aa20.55■□□□□ 0.88
HMGB3-205ENST00000455596 SPESP1Q6UW49 350 aa20.55■□□□□ 0.88
HMGB3-205ENST00000455596 SDCCAG8Q86SQ7 713 aaPredicted RBP20.55■□□□□ 0.88
HMGB3-205ENST00000455596 VRK3Q8IV63 474 aa20.55■□□□□ 0.88
HMGB3-205ENST00000455596 ACTRT1Q8TDG2 376 aa20.55■□□□□ 0.88
HMGB3-205ENST00000455596 CT55Q8WUE5 264 aa20.55■□□□□ 0.88
HMGB3-205ENST00000455596 CPT1BQ92523 772 aa20.55■□□□□ 0.88
Retrieved 100 of 20,778 RNA–protein pairs in 36.4 ms