RNA–Protein interactions for RNA: ENST00000429895.5

PTPRF-206, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 6,312 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-206ENST00000429895 TM4SF1P30408 202 aa15.15■□□□□ 0.02
PTPRF-206ENST00000429895 CASRP41180 1078 aa15.15■□□□□ 0.02
PTPRF-206ENST00000429895 RPP38P78345 283 aaKnown RBP15.15■□□□□ 0.02
PTPRF-206ENST00000429895 KLF1Q13351 362 aaPredicted RBP15.15■□□□□ 0.02
PTPRF-206ENST00000429895 TAF1AQ15573 450 aaPredicted RBP15.15■□□□□ 0.02
PTPRF-206ENST00000429895 SLC9B1Q4ZJI4 515 aa15.15■□□□□ 0.02
PTPRF-206ENST00000429895 HNRNPABQ99729 332 aaKnown RBP15.15■□□□□ 0.02
PTPRF-206ENST00000429895 C11orf84Q9BUA3 381 aaPredicted RBP15.15■□□□□ 0.02
PTPRF-206ENST00000429895 TRIM64A6NGJ6 449 aa15.15■□□□□ 0.02
PTPRF-206ENST00000429895 ANGPTL1O95841 491 aa15.15■□□□□ 0.02
PTPRF-206ENST00000429895 PSMA1P25786 263 aaKnown RBP15.15■□□□□ 0.02
PTPRF-206ENST00000429895 LCN1P1Q5VSP4 162 aa15.15■□□□□ 0.02
PTPRF-206ENST00000429895 OVCA2Q8WZ82 227 aa15.15■□□□□ 0.02
PTPRF-206ENST00000429895 SGCDQ92629 289 aa15.15■□□□□ 0.02
PTPRF-206ENST00000429895 CFAP20Q9Y6A4 193 aaKnown RBP15.15■□□□□ 0.02
PTPRF-206ENST00000429895 SH3D21A4FU49 640 aa15.15■□□□□ 0.02
PTPRF-206ENST00000429895 MAP2K7O14733 419 aa15.15■□□□□ 0.02
PTPRF-206ENST00000429895 GADD45GO95257 159 aa15.15■□□□□ 0.02
PTPRF-206ENST00000429895 GJA1P17302 382 aa15.15■□□□□ 0.02
PTPRF-206ENST00000429895 IL10RBQ08334 325 aa15.15■□□□□ 0.02
PTPRF-206ENST00000429895 PITRM1Q5JRX3 1037 aa15.15■□□□□ 0.02
PTPRF-206ENST00000429895 CAND1Q86VP6 1230 aaKnown RBP15.15■□□□□ 0.02
PTPRF-206ENST00000429895 ZNF781Q8N8C0 355 aa15.15■□□□□ 0.02
PTPRF-206ENST00000429895 NAXEQ8NCW5 288 aa15.15■□□□□ 0.02
PTPRF-206ENST00000429895 KHNYNO15037 678 aaKnown RBP15.15■□□□□ 0.02
PTPRF-206ENST00000429895 SLC6A9P48067 706 aa15.15■□□□□ 0.02
PTPRF-206ENST00000429895 CARD16Q5EG05 197 aa15.15■□□□□ 0.02
PTPRF-206ENST00000429895 ARSJQ5FYB0 599 aaPredicted RBP15.15■□□□□ 0.02
PTPRF-206ENST00000429895 OR5M3Q8NGP4 307 aa15.15■□□□□ 0.02
PTPRF-206ENST00000429895 WDR12Q9GZL7 423 aaKnown RBP15.15■□□□□ 0.02
PTPRF-206ENST00000429895 PCBD2Q9H0N5 130 aa15.15■□□□□ 0.02
PTPRF-206ENST00000429895 CLCA3PQ9Y6N3 262 aa15.15■□□□□ 0.02
PTPRF-206ENST00000429895 NOBOXO60393 691 aa15.14■□□□□ 0.01
PTPRF-206ENST00000429895 LYPLA2O95372 231 aa15.14■□□□□ 0.01
PTPRF-206ENST00000429895 LIMK2P53671 638 aa15.14■□□□□ 0.01
PTPRF-206ENST00000429895 FSTL4Q6MZW2 842 aa15.14■□□□□ 0.01
PTPRF-206ENST00000429895 LINGO2Q7L985 606 aa15.14■□□□□ 0.01
PTPRF-206ENST00000429895 ANKFN1Q8N957 763 aa15.14■□□□□ 0.01
PTPRF-206ENST00000429895 HM13Q8TCT9 377 aa15.14■□□□□ 0.01
PTPRF-206ENST00000429895 LRTOMTQ8WZ04 291 aa15.14■□□□□ 0.01
PTPRF-206ENST00000429895 CDK15Q96Q40 435 aa15.14■□□□□ 0.01
PTPRF-206ENST00000429895 GFM1Q96RP9 751 aaKnown RBP15.14■□□□□ 0.01
PTPRF-206ENST00000429895 CCDC28BQ9BUN5 200 aa15.14■□□□□ 0.01
PTPRF-206ENST00000429895 ANKHQ9HCJ1 492 aa15.14■□□□□ 0.01
PTPRF-206ENST00000429895 MALT1Q9UDY8 824 aa15.14■□□□□ 0.01
PTPRF-206ENST00000429895 PMF1-BGLAPU3KQ54 211 aa15.14■□□□□ 0.01
PTPRF-206ENST00000429895 TBX18O95935 607 aa15.14■□□□□ 0.01
PTPRF-206ENST00000429895 L1CAMP32004 1257 aa15.14■□□□□ 0.01
PTPRF-206ENST00000429895 NRG3P56975 720 aa15.14■□□□□ 0.01
PTPRF-206ENST00000429895 ZNF311Q5JNZ3 666 aa15.14■□□□□ 0.01
PTPRF-206ENST00000429895 TMEM192Q8IY95 271 aa15.14■□□□□ 0.01
PTPRF-206ENST00000429895 NIFKQ9BYG3 293 aaKnown RBP15.14■□□□□ 0.01
PTPRF-206ENST00000429895 HYKKA2RU49 373 aa15.14■□□□□ 0.01
PTPRF-206ENST00000429895 ELOA3DA6NLF2 546 aaPredicted RBP15.14■□□□□ 0.01
PTPRF-206ENST00000429895 OR7A10O76100 309 aa15.14■□□□□ 0.01
PTPRF-206ENST00000429895 RENP00797 406 aa15.14■□□□□ 0.01
PTPRF-206ENST00000429895 ASLP04424 464 aa15.14■□□□□ 0.01
PTPRF-206ENST00000429895 PGAM2P15259 253 aa15.14■□□□□ 0.01
PTPRF-206ENST00000429895 TARDBPQ13148 414 aaKnown RBP eCLIP15.14■□□□□ 0.016e-7■■■■■ 33
PTPRF-206ENST00000429895 ELOA3BQ3SY89 546 aa15.14■□□□□ 0.01
PTPRF-206ENST00000429895 USP30Q70CQ3 517 aa15.14■□□□□ 0.01
PTPRF-206ENST00000429895 DGLUCYQ7Z3D6 616 aa15.14■□□□□ 0.01
PTPRF-206ENST00000429895 ZNF366Q8N895 744 aa15.14■□□□□ 0.01
PTPRF-206ENST00000429895 Q8N9G6 341 aaPredicted RBP15.14■□□□□ 0.01
PTPRF-206ENST00000429895 NLGN2Q8NFZ4 835 aa15.14■□□□□ 0.01
PTPRF-206ENST00000429895 ELOA3Q8NG57 546 aa15.14■□□□□ 0.01
PTPRF-206ENST00000429895 RFKQ969G6 155 aa15.14■□□□□ 0.01
PTPRF-206ENST00000429895 GPATCH1Q9BRR8 931 aaKnown RBP15.14■□□□□ 0.01
PTPRF-206ENST00000429895 SDCBP2Q9H190 292 aa15.14■□□□□ 0.01
PTPRF-206ENST00000429895 WDR26Q9H7D7 661 aa15.14■□□□□ 0.01
PTPRF-206ENST00000429895 PNPLA8Q9NP80 782 aa15.14■□□□□ 0.01
PTPRF-206ENST00000429895 IFT80Q9P2H3 777 aaPredicted RBP15.14■□□□□ 0.01
PTPRF-206ENST00000429895 FBXW11Q9UKB1 542 aa15.14■□□□□ 0.01
PTPRF-206ENST00000429895 FKBP7Q9Y680 259 aa15.14■□□□□ 0.01
PTPRF-206ENST00000429895 FSHRP23945 695 aa15.14■□□□□ 0.01
PTPRF-206ENST00000429895 FPGSQ05932 587 aa15.14■□□□□ 0.01
PTPRF-206ENST00000429895 IDNKQ5T6J7 187 aa15.14■□□□□ 0.01
PTPRF-206ENST00000429895 PLET1Q6UQ28 207 aa15.14■□□□□ 0.01
PTPRF-206ENST00000429895 MNTQ99583 582 aa15.14■□□□□ 0.01
PTPRF-206ENST00000429895 PLK4O00444 970 aa15.14■□□□□ 0.01
PTPRF-206ENST00000429895 TULP3O75386 442 aa15.14■□□□□ 0.01
PTPRF-206ENST00000429895 CHRNA4P43681 627 aa15.14■□□□□ 0.01
PTPRF-206ENST00000429895 CDKL1Q00532 357 aa15.14■□□□□ 0.01
PTPRF-206ENST00000429895 LBX2Q6XYB7 198 aa15.14■□□□□ 0.01
PTPRF-206ENST00000429895 ZNF627Q7L945 461 aa15.14■□□□□ 0.01
PTPRF-206ENST00000429895 TMPRSS9Q7Z410 1059 aa15.14■□□□□ 0.01
PTPRF-206ENST00000429895 NANOGNBQ7Z5D8 188 aa15.14■□□□□ 0.01
PTPRF-206ENST00000429895 RBM15BQ8NDT2 890 aaKnown RBP15.14■□□□□ 0.01
PTPRF-206ENST00000429895 TCF7L1Q9HCS4 588 aa15.14■□□□□ 0.01
PTPRF-206ENST00000429895 MAFBQ9Y5Q3 323 aaPredicted RBP15.14■□□□□ 0.01
PTPRF-206ENST00000429895 SOWAHBA6NEL2 793 aa15.13■□□□□ 0.01
PTPRF-206ENST00000429895 ZNF726A6NNF4 738 aa15.13■□□□□ 0.01
PTPRF-206ENST00000429895 GSC2O15499 205 aa15.13■□□□□ 0.01
PTPRF-206ENST00000429895 MTX2O75431 263 aa15.13■□□□□ 0.01
PTPRF-206ENST00000429895 SERPINA3P01011 423 aa15.13■□□□□ 0.01
PTPRF-206ENST00000429895 CSN2P05814 226 aa15.13■□□□□ 0.01
PTPRF-206ENST00000429895 ZBTB48P10074 688 aaPredicted RBP15.13■□□□□ 0.01
PTPRF-206ENST00000429895 ZNF20P17024 532 aa15.13■□□□□ 0.01
PTPRF-206ENST00000429895 NSG1P42857 185 aa15.13■□□□□ 0.01
PTPRF-206ENST00000429895 RIN1Q13671 783 aa15.13■□□□□ 0.01
Retrieved 100 of 20,778 RNA–protein pairs in 34.7 ms