RNA–Protein interactions for RNA: ENST00000411423.1

SF3A1-202, Transcript of splicing factor 3a subunit 1, humanhuman

TSL 4

Gene SF3A1, Length 548 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-202ENST00000411423 LARP7Q4G0J3 582 aaKnown RBP eCLIP18.49■□□□□ 0.55
SF3A1-202ENST00000411423 PRAMEF17Q5VTA0 474 aa18.49■□□□□ 0.55
SF3A1-202ENST00000411423 AMIGO1Q86WK6 493 aa18.49■□□□□ 0.55
SF3A1-202ENST00000411423 PPP1R3BQ86XI6 285 aa18.49■□□□□ 0.55
SF3A1-202ENST00000411423 KMT5CQ86Y97 462 aa18.49■□□□□ 0.55
SF3A1-202ENST00000411423 FLVCR1-AS1Q8TAF5 88 aa18.49■□□□□ 0.55
SF3A1-202ENST00000411423 ZNF501Q96CX3 271 aaPredicted RBP18.49■□□□□ 0.55
SF3A1-202ENST00000411423 CARD6Q9BX69 1037 aa18.49■□□□□ 0.55
SF3A1-202ENST00000411423 TWSG1Q9GZX9 223 aa18.49■□□□□ 0.55
SF3A1-202ENST00000411423 KLHL25Q9H0H3 589 aa18.49■□□□□ 0.55
SF3A1-202ENST00000411423 FGF21Q9NSA1 209 aa18.49■□□□□ 0.55
SF3A1-202ENST00000411423 SPHK1Q9NYA1 384 aa18.49■□□□□ 0.55
SF3A1-202ENST00000411423 ASF1AQ9Y294 204 aa18.49■□□□□ 0.55
SF3A1-202ENST00000411423 GOLGA8MH3BSY2 632 aa18.48■□□□□ 0.55
SF3A1-202ENST00000411423 FANCGO15287 622 aa18.48■□□□□ 0.55
SF3A1-202ENST00000411423 ZBTB11O95625 1053 aaPredicted RBP18.48■□□□□ 0.55
SF3A1-202ENST00000411423 AOAHP28039 575 aa18.48■□□□□ 0.55
SF3A1-202ENST00000411423 PEBP1P30086 187 aaKnown RBP18.48■□□□□ 0.55
SF3A1-202ENST00000411423 HSD11B2P80365 405 aa18.48■□□□□ 0.55
SF3A1-202ENST00000411423 HSPA14Q0VDF9 509 aa18.48■□□□□ 0.55
SF3A1-202ENST00000411423 SYTL3Q4VX76 610 aa18.48■□□□□ 0.55
SF3A1-202ENST00000411423 ZNF789Q5FWF6 425 aa18.48■□□□□ 0.55
SF3A1-202ENST00000411423 CTSL3PQ5NE16 218 aa18.48■□□□□ 0.55
SF3A1-202ENST00000411423 ATP1A1-AS1Q5TC04 95 aa18.48■□□□□ 0.55
SF3A1-202ENST00000411423 ARMC6Q6NXE6 501 aa18.48■□□□□ 0.55
SF3A1-202ENST00000411423 C6orf15Q6UXA7 325 aaPredicted RBP18.48■□□□□ 0.55
SF3A1-202ENST00000411423 UNC5AQ6ZN44 842 aa18.48■□□□□ 0.55
SF3A1-202ENST00000411423 TRIM73Q86UV7 250 aa18.48■□□□□ 0.55
SF3A1-202ENST00000411423 SLC22A15Q8IZD6 547 aa18.48■□□□□ 0.55
SF3A1-202ENST00000411423 SLC45A3Q96JT2 553 aa18.48■□□□□ 0.55
SF3A1-202ENST00000411423 SERPINB12Q96P63 405 aa18.48■□□□□ 0.55
SF3A1-202ENST00000411423 RUFY1Q96T51 708 aa18.48■□□□□ 0.55
SF3A1-202ENST00000411423 PITPNM3Q9BZ71 974 aa18.48■□□□□ 0.55
SF3A1-202ENST00000411423 GPN2Q9H9Y4 310 aaPredicted RBP18.48■□□□□ 0.55
SF3A1-202ENST00000411423 ACTR10Q9NZ32 417 aa18.48■□□□□ 0.55
SF3A1-202ENST00000411423 CIDEBQ9UHD4 219 aa18.48■□□□□ 0.55
SF3A1-202ENST00000411423 RARRES3Q9UL19 164 aa18.48■□□□□ 0.55
SF3A1-202ENST00000411423 BTRCQ9Y297 605 aa18.48■□□□□ 0.55
SF3A1-202ENST00000411423 RPS6KL1Q9Y6S9 549 aa18.48■□□□□ 0.55
SF3A1-202ENST00000411423 BOD1L1Q8NFC6 3051 aa18.47■□□□□ 0.55
SF3A1-202ENST00000411423 EIF4E1BA6NMX2 242 aaKnown RBP18.47■□□□□ 0.55
SF3A1-202ENST00000411423 PRMT5O14744 637 aaPredicted RBP18.47■□□□□ 0.55
SF3A1-202ENST00000411423 NTRK1P04629 796 aa18.47■□□□□ 0.55
SF3A1-202ENST00000411423 CDH3P22223 829 aa18.47■□□□□ 0.55
SF3A1-202ENST00000411423 GRB7Q14451 532 aa18.47■□□□□ 0.55
SF3A1-202ENST00000411423 AARS2Q5JTZ9 985 aaKnown RBP18.47■□□□□ 0.55
SF3A1-202ENST00000411423 ZNF449Q6P9G9 518 aa18.47■□□□□ 0.55
SF3A1-202ENST00000411423 TBC1D21Q8IYX1 336 aa18.47■□□□□ 0.55
SF3A1-202ENST00000411423 ESX1Q8N693 406 aa18.47■□□□□ 0.55
SF3A1-202ENST00000411423 NAT8LQ8N9F0 302 aa18.47■□□□□ 0.55
SF3A1-202ENST00000411423 OR5K2Q8NHB8 316 aa18.47■□□□□ 0.55
SF3A1-202ENST00000411423 BIRC8Q96P09 236 aa18.47■□□□□ 0.55
SF3A1-202ENST00000411423 TRAPPC9Q96Q05 1148 aa18.47■□□□□ 0.55
SF3A1-202ENST00000411423 TTC1Q99614 292 aa18.47■□□□□ 0.55
SF3A1-202ENST00000411423 MENTQ9BUN1 341 aa18.47■□□□□ 0.55
SF3A1-202ENST00000411423 C1GALT1Q9NS00 363 aa18.47■□□□□ 0.55
SF3A1-202ENST00000411423 LNPEPQ9UIQ6 1025 aa18.47■□□□□ 0.55
SF3A1-202ENST00000411423 CROTQ9UKG9 612 aa18.47■□□□□ 0.55
SF3A1-202ENST00000411423 TDRKHQ9Y2W6 561 aaKnown RBP18.47■□□□□ 0.55
SF3A1-202ENST00000411423 CFAP46Q8IYW2 2715 aa18.47■□□□□ 0.55
SF3A1-202ENST00000411423 KRT87PA6NCN2 255 aa18.46■□□□□ 0.55
SF3A1-202ENST00000411423 AP3B1O00203 1094 aa18.46■□□□□ 0.55
SF3A1-202ENST00000411423 CES2O00748 559 aa18.46■□□□□ 0.55
SF3A1-202ENST00000411423 HCRTR1O43613 425 aa18.46■□□□□ 0.55
SF3A1-202ENST00000411423 KIF5CO60282 957 aa18.46■□□□□ 0.55
SF3A1-202ENST00000411423 FAM87AP0C7U9 286 aa18.46■□□□□ 0.55
SF3A1-202ENST00000411423 MAGEA3P43357 314 aa18.46■□□□□ 0.55
SF3A1-202ENST00000411423 TTPAP49638 278 aa18.46■□□□□ 0.55
SF3A1-202ENST00000411423 ACY1Q03154 408 aa18.46■□□□□ 0.55
SF3A1-202ENST00000411423 ABRQ12979 859 aa18.46■□□□□ 0.55
SF3A1-202ENST00000411423 PRKAA1Q13131 559 aa18.46■□□□□ 0.55
SF3A1-202ENST00000411423 ZIC1Q15915 447 aa18.46■□□□□ 0.55
SF3A1-202ENST00000411423 TYSND1Q2T9J0 566 aa18.46■□□□□ 0.55
SF3A1-202ENST00000411423 KIAA0930Q6ICG6 404 aaPredicted RBP18.46■□□□□ 0.55
SF3A1-202ENST00000411423 ZSCAN1Q8NBB4 408 aa18.46■□□□□ 0.55
SF3A1-202ENST00000411423 SLC38A9Q8NBW4 561 aa18.46■□□□□ 0.55
SF3A1-202ENST00000411423 MCUQ8NE86 351 aa18.46■□□□□ 0.55
SF3A1-202ENST00000411423 LPGAT1Q92604 370 aa18.46■□□□□ 0.55
SF3A1-202ENST00000411423 OR2A14Q96R47 310 aa18.46■□□□□ 0.55
SF3A1-202ENST00000411423 DDX47Q9H0S4 455 aaKnown RBP18.46■□□□□ 0.55
SF3A1-202ENST00000411423 TRIT1Q9H3H1 467 aaKnown RBP18.46■□□□□ 0.55
SF3A1-202ENST00000411423 PDE7BQ9NP56 450 aa18.46■□□□□ 0.55
SF3A1-202ENST00000411423 SOHLH2Q9NX45 425 aa18.46■□□□□ 0.55
SF3A1-202ENST00000411423 GALPQ9UBC7 116 aa18.46■□□□□ 0.55
SF3A1-202ENST00000411423 ANAPC5Q9UJX4 755 aa18.46■□□□□ 0.55
SF3A1-202ENST00000411423 ZCWPW2A0A1B0GU75 182 aa18.45■□□□□ 0.54
SF3A1-202ENST00000411423 SLCO2B1O94956 709 aa18.45■□□□□ 0.54
SF3A1-202ENST00000411423 ITGB2P05107 769 aa18.45■□□□□ 0.54
SF3A1-202ENST00000411423 CHRM5P08912 532 aaPredicted RBP18.45■□□□□ 0.54
SF3A1-202ENST00000411423 FURINP09958 794 aa18.45■□□□□ 0.54
SF3A1-202ENST00000411423 PRKAR1AP10644 381 aa18.45■□□□□ 0.54
SF3A1-202ENST00000411423 UGT2B7P16662 529 aa18.45■□□□□ 0.54
SF3A1-202ENST00000411423 RPS3P23396 243 aaKnown RBP eCLIP18.45■□□□□ 0.541e-9■■■□□ 17.3
SF3A1-202ENST00000411423 OAS2P29728 719 aaKnown RBP18.45■□□□□ 0.54
SF3A1-202ENST00000411423 DLSTP36957 453 aa18.45■□□□□ 0.54
SF3A1-202ENST00000411423 FNTAP49354 379 aa18.45■□□□□ 0.54
SF3A1-202ENST00000411423 ARL4DP49703 201 aa18.45■□□□□ 0.54
SF3A1-202ENST00000411423 EIF3BP55884 814 aaKnown RBP18.45■□□□□ 0.54
SF3A1-202ENST00000411423 TUBB4BP68371 445 aa18.45■□□□□ 0.54
SF3A1-202ENST00000411423 TUBB2AQ13885 445 aa18.45■□□□□ 0.54
Retrieved 100 of 20,778 RNA–protein pairs in 35.2 ms