RNA–Protein interactions for RNA: ENST00000398452.6

SKA1-202, Transcript of spindle and kinetochore associated complex subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SKA1, Length 979 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1-202ENST00000398452 NCF1P14598 390 aaPredicted RBP13.88□□□□□ -0.19
SKA1-202ENST00000398452 ETV4P43268 484 aa13.88□□□□□ -0.19
SKA1-202ENST00000398452 RPIAP49247 311 aa13.88□□□□□ -0.19
SKA1-202ENST00000398452 CSNK1EP49674 416 aaKnown RBP13.88□□□□□ -0.19
SKA1-202ENST00000398452 AP1S2P56377 157 aa13.88□□□□□ -0.19
SKA1-202ENST00000398452 WDR4P57081 412 aaKnown RBP13.88□□□□□ -0.19
SKA1-202ENST00000398452 NAA20P61599 178 aa13.88□□□□□ -0.19
SKA1-202ENST00000398452 HNRNPKP61978 463 aaKnown RBP eCLIP13.88□□□□□ -0.19
SKA1-202ENST00000398452 CTBSQ01459 385 aa13.88□□□□□ -0.19
SKA1-202ENST00000398452 GUCY1A3Q02108 690 aa13.88□□□□□ -0.19
SKA1-202ENST00000398452 FZD2Q14332 565 aa13.88□□□□□ -0.19
SKA1-202ENST00000398452 ELOCQ15369 112 aa13.88□□□□□ -0.19
SKA1-202ENST00000398452 LIPMQ5VYY2 423 aa13.88□□□□□ -0.19
SKA1-202ENST00000398452 SLC30A9Q6PML9 568 aa13.88□□□□□ -0.19
SKA1-202ENST00000398452 PDZD3Q86UT5 571 aa13.88□□□□□ -0.19
SKA1-202ENST00000398452 SYT12Q8IV01 421 aa13.88□□□□□ -0.19
SKA1-202ENST00000398452 VRK3Q8IV63 474 aa13.88□□□□□ -0.19
SKA1-202ENST00000398452 TCAIMQ8N3R3 496 aa13.88□□□□□ -0.19
SKA1-202ENST00000398452 CEP76Q8TAP6 659 aa13.88□□□□□ -0.19
SKA1-202ENST00000398452 RAB3IL1Q8TBN0 382 aa13.88□□□□□ -0.19
SKA1-202ENST00000398452 ATL1Q8WXF7 558 aa13.88□□□□□ -0.19
SKA1-202ENST00000398452 TFGQ92734 400 aaPredicted RBP13.88□□□□□ -0.19
SKA1-202ENST00000398452 PTERQ96BW5 349 aa13.88□□□□□ -0.19
SKA1-202ENST00000398452 ZC3H10Q96K80 434 aaKnown RBP13.88□□□□□ -0.19
SKA1-202ENST00000398452 MAGEB18Q96M61 343 aa13.88□□□□□ -0.19
SKA1-202ENST00000398452 WWP1Q9H0M0 922 aa13.88□□□□□ -0.19
SKA1-202ENST00000398452 TRIT1Q9H3H1 467 aaKnown RBP13.88□□□□□ -0.19
SKA1-202ENST00000398452 GPR27Q9NS67 375 aa13.88□□□□□ -0.19
SKA1-202ENST00000398452 TM7SF3Q9NS93 570 aa13.88□□□□□ -0.19
SKA1-202ENST00000398452 ARL15Q9NXU5 204 aa13.88□□□□□ -0.19
SKA1-202ENST00000398452 WWOXQ9NZC7 414 aa13.88□□□□□ -0.19
SKA1-202ENST00000398452 SLC23A2Q9UGH3 650 aa13.88□□□□□ -0.19
SKA1-202ENST00000398452 EMCNQ9ULC0 261 aa13.88□□□□□ -0.19
SKA1-202ENST00000398452 PSMD13Q9UNM6 376 aa13.88□□□□□ -0.19
SKA1-202ENST00000398452 TNPO3Q9Y5L0 923 aaKnown RBP13.88□□□□□ -0.19
SKA1-202ENST00000398452 HEBP2Q9Y5Z4 205 aa13.88□□□□□ -0.19
SKA1-202ENST00000398452 ATXN2Q99700 1313 aaKnown RBP13.88□□□□□ -0.19
SKA1-202ENST00000398452 UBXN8O00124 270 aa13.87□□□□□ -0.19
SKA1-202ENST00000398452 FFAR2O15552 330 aa13.87□□□□□ -0.19
SKA1-202ENST00000398452 IPO13O94829 963 aaKnown RBP13.87□□□□□ -0.19
SKA1-202ENST00000398452 GUCA1CO95843 209 aa13.87□□□□□ -0.19
SKA1-202ENST00000398452 CSF2P04141 144 aa13.87□□□□□ -0.19
SKA1-202ENST00000398452 WNT1P04628 370 aa13.87□□□□□ -0.19
SKA1-202ENST00000398452 DHRS4L1P0CG22 281 aa13.87□□□□□ -0.19
SKA1-202ENST00000398452 GRK2P25098 689 aa13.87□□□□□ -0.19
SKA1-202ENST00000398452 RPL10P27635 214 aaKnown RBP13.87□□□□□ -0.19
SKA1-202ENST00000398452 PDHA2P29803 388 aa13.87□□□□□ -0.19
SKA1-202ENST00000398452 ALDH3A1P30838 453 aa13.87□□□□□ -0.19
SKA1-202ENST00000398452 HOXD12P35452 270 aa13.87□□□□□ -0.19
SKA1-202ENST00000398452 ARRB1P49407 418 aaPredicted RBP13.87□□□□□ -0.19
SKA1-202ENST00000398452 GYS2P54840 703 aa13.87□□□□□ -0.19
SKA1-202ENST00000398452 NXPH1P58417 271 aa13.87□□□□□ -0.19
SKA1-202ENST00000398452 GNGT1P63211 74 aa13.87□□□□□ -0.19
SKA1-202ENST00000398452 EIF2B5Q13144 721 aaKnown RBP13.87□□□□□ -0.19
SKA1-202ENST00000398452 BIRC2Q13490 618 aa13.87□□□□□ -0.19
SKA1-202ENST00000398452 TGFBIQ15582 683 aa13.87□□□□□ -0.19
SKA1-202ENST00000398452 OR4D1Q15615 310 aa13.87□□□□□ -0.19
SKA1-202ENST00000398452 CHI3L2Q15782 390 aa13.87□□□□□ -0.19
SKA1-202ENST00000398452 PDK4Q16654 411 aa13.87□□□□□ -0.19
SKA1-202ENST00000398452 PFKFB4Q16877 469 aa13.87□□□□□ -0.19
SKA1-202ENST00000398452 RSPO4Q2I0M5 234 aaPredicted RBP13.87□□□□□ -0.19
SKA1-202ENST00000398452 UAP1L1Q3KQV9 507 aa13.87□□□□□ -0.19
SKA1-202ENST00000398452 ZNF542PQ5EBM4 170 aa13.87□□□□□ -0.19
SKA1-202ENST00000398452 TPRG1LQ5T0D9 272 aa13.87□□□□□ -0.19
SKA1-202ENST00000398452 SULT1C3Q6IMI6 304 aa13.87□□□□□ -0.19
SKA1-202ENST00000398452 CYHR1Q6ZMK1 362 aa13.87□□□□□ -0.19
SKA1-202ENST00000398452 DGLUCYQ7Z3D6 616 aa13.87□□□□□ -0.19
SKA1-202ENST00000398452 GKN2Q86XP6 184 aa13.87□□□□□ -0.19
SKA1-202ENST00000398452 C10orf107Q8IVU9 208 aa13.87□□□□□ -0.19
SKA1-202ENST00000398452 TRIM48Q8IWZ4 208 aa13.87□□□□□ -0.19
SKA1-202ENST00000398452 LILRA3Q8N6C8 439 aaPredicted RBP13.87□□□□□ -0.19
SKA1-202ENST00000398452 PTGR2Q8N8N7 351 aaPredicted RBP13.87□□□□□ -0.19
SKA1-202ENST00000398452 CKAP2Q8WWK9 683 aa13.87□□□□□ -0.19
SKA1-202ENST00000398452 ASB11Q8WXH4 323 aa13.87□□□□□ -0.19
SKA1-202ENST00000398452 NELL1Q92832 810 aa13.87□□□□□ -0.19
SKA1-202ENST00000398452 RAD51AP1Q96B01 352 aa13.87□□□□□ -0.19
SKA1-202ENST00000398452 PHF21BQ96EK2 531 aa13.87□□□□□ -0.19
SKA1-202ENST00000398452 C12orf66Q96MD2 445 aa13.87□□□□□ -0.19
SKA1-202ENST00000398452 ATOH8Q96SQ7 321 aa13.87□□□□□ -0.19
SKA1-202ENST00000398452 SLC12A9Q9BXP2 914 aa13.87□□□□□ -0.19
SKA1-202ENST00000398452 TMEM168Q9H0V1 697 aa13.87□□□□□ -0.19
SKA1-202ENST00000398452 STN1Q9H668 368 aaKnown RBP13.87□□□□□ -0.19
SKA1-202ENST00000398452 MANSC1Q9H8J5 431 aa13.87□□□□□ -0.19
SKA1-202ENST00000398452 RDH14Q9HBH5 336 aa13.87□□□□□ -0.19
SKA1-202ENST00000398452 IMP3Q9NV31 184 aaKnown RBP13.87□□□□□ -0.19
SKA1-202ENST00000398452 NCKIPSDQ9NZQ3 722 aa13.87□□□□□ -0.19
SKA1-202ENST00000398452 CDYLQ9Y232 598 aa13.87□□□□□ -0.19
SKA1-202ENST00000398452 ANGPTL3Q9Y5C1 460 aa13.87□□□□□ -0.19
SKA1-202ENST00000398452 COLEC10Q9Y6Z7 277 aa13.87□□□□□ -0.19
SKA1-202ENST00000398452 DOCK9Q9BZ29 2069 aa13.86□□□□□ -0.19
SKA1-202ENST00000398452 PIKFYVEQ9Y2I7 2098 aa13.86□□□□□ -0.19
SKA1-202ENST00000398452 OR5K4A6NMS3 321 aa13.86□□□□□ -0.19
SKA1-202ENST00000398452 ZNF839A8K0R7 811 aa13.86□□□□□ -0.19
SKA1-202ENST00000398452 G3V2L1 256 aa13.86□□□□□ -0.19
SKA1-202ENST00000398452 GIPC1O14908 333 aa13.86□□□□□ -0.19
SKA1-202ENST00000398452 PSIP1O75475 530 aaKnown RBP13.86□□□□□ -0.19
SKA1-202ENST00000398452 MATN4O95460 622 aa13.86□□□□□ -0.19
SKA1-202ENST00000398452 FUCA1P04066 466 aa13.86□□□□□ -0.19
SKA1-202ENST00000398452 SERPINE1P05121 402 aa13.86□□□□□ -0.19
SKA1-202ENST00000398452 CFIP05156 583 aa13.86□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 56.5 ms