RNA–Protein interactions for RNA: ENST00000372733.3

SDC4-201, Transcript of syndecan 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SDC4, Length 2,613 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC4-201ENST00000372733 ARL10Q8N8L6 244 aa16.08■□□□□ 0.16
SDC4-201ENST00000372733 BARD1Q99728 777 aaKnown RBP16.08■□□□□ 0.16
SDC4-201ENST00000372733 NSUN3Q9H649 340 aaKnown RBP16.08■□□□□ 0.16
SDC4-201ENST00000372733 IPPKQ9H8X2 491 aa16.08■□□□□ 0.16
SDC4-201ENST00000372733 POLE4Q9NR33 117 aa16.08■□□□□ 0.16
SDC4-201ENST00000372733 MTPAPQ9NVV4 582 aaKnown RBP eCLIP16.08■□□□□ 0.16
SDC4-201ENST00000372733 PCDHGC4Q9Y5F7 938 aa16.08■□□□□ 0.16
SDC4-201ENST00000372733 PLXNA3P51805 1871 aa16.08■□□□□ 0.16
SDC4-201ENST00000372733 GUCA1CO95843 209 aa16.07■□□□□ 0.16
SDC4-201ENST00000372733 TACR2P21452 398 aa16.07■□□□□ 0.16
SDC4-201ENST00000372733 LPOP22079 712 aaPredicted RBP16.07■□□□□ 0.16
SDC4-201ENST00000372733 IL1RL1Q01638 556 aa16.07■□□□□ 0.16
SDC4-201ENST00000372733 FPGSQ05932 587 aa16.07■□□□□ 0.16
SDC4-201ENST00000372733 SGO1Q5FBB7 561 aa16.07■□□□□ 0.16
SDC4-201ENST00000372733 PAGE2BQ5JRK9 111 aa16.07■□□□□ 0.16
SDC4-201ENST00000372733 CXCL17Q6UXB2 119 aa16.07■□□□□ 0.16
SDC4-201ENST00000372733 TAS2R42Q7RTR8 314 aa16.07■□□□□ 0.16
SDC4-201ENST00000372733 LIX1Q8N485 282 aa16.07■□□□□ 0.16
SDC4-201ENST00000372733 ATAD1Q8NBU5 361 aa16.07■□□□□ 0.16
SDC4-201ENST00000372733 RORBQ92753 470 aa16.07■□□□□ 0.16
SDC4-201ENST00000372733 KCNJ9Q92806 393 aa16.07■□□□□ 0.16
SDC4-201ENST00000372733 VMP1Q96GC9 406 aa16.07■□□□□ 0.16
SDC4-201ENST00000372733 PCDHB8Q9UN66 801 aa16.07■□□□□ 0.16
SDC4-201ENST00000372733 FAM32AQ9Y421 112 aaKnown RBP16.07■□□□□ 0.16
SDC4-201ENST00000372733 PRMT5O14744 637 aaPredicted RBP16.07■□□□□ 0.16
SDC4-201ENST00000372733 CREG1O75629 220 aa16.07■□□□□ 0.16
SDC4-201ENST00000372733 SCELO95171 688 aa16.07■□□□□ 0.16
SDC4-201ENST00000372733 CCDC159P0C7I6 412 aa16.07■□□□□ 0.16
SDC4-201ENST00000372733 MASP1P48740 699 aa16.07■□□□□ 0.16
SDC4-201ENST00000372733 NCS1P62166 190 aa16.07■□□□□ 0.16
SDC4-201ENST00000372733 MAP2K5Q13163 448 aa16.07■□□□□ 0.16
SDC4-201ENST00000372733 SIM2Q14190 667 aaPredicted RBP16.07■□□□□ 0.16
SDC4-201ENST00000372733 PCBP2Q15366 365 aaKnown RBP eCLIP16.07■□□□□ 0.165e-7■■■■□ 21.3
SDC4-201ENST00000372733 INAVAQ3KP66 663 aa16.07■□□□□ 0.16
SDC4-201ENST00000372733 SBSNQ6UWP8 590 aa16.07■□□□□ 0.16
SDC4-201ENST00000372733 MILR1Q7Z6M3 343 aa16.07■□□□□ 0.16
SDC4-201ENST00000372733 B3GNT8Q7Z7M8 397 aa16.07■□□□□ 0.16
SDC4-201ENST00000372733 CHPFQ8IZ52 775 aa16.07■□□□□ 0.16
SDC4-201ENST00000372733 PIK3C3Q8NEB9 887 aa16.07■□□□□ 0.16
SDC4-201ENST00000372733 NETO1Q8TDF5 533 aa16.07■□□□□ 0.16
SDC4-201ENST00000372733 HPS1Q92902 700 aa16.07■□□□□ 0.16
SDC4-201ENST00000372733 PPP3R2Q96LZ3 170 aa16.07■□□□□ 0.16
SDC4-201ENST00000372733 ADAM2Q99965 735 aa16.07■□□□□ 0.16
SDC4-201ENST00000372733 DPY30Q9C005 99 aa16.07■□□□□ 0.16
SDC4-201ENST00000372733 RIBC2Q9H4K1 309 aa16.07■□□□□ 0.16
SDC4-201ENST00000372733 DCAF13Q9NV06 445 aaKnown RBP16.07■□□□□ 0.16
SDC4-201ENST00000372733 ZNF232Q9UNY5 417 aa16.07■□□□□ 0.16
SDC4-201ENST00000372733 SLC22A1O15245 554 aa16.06■□□□□ 0.16
SDC4-201ENST00000372733 ZNF623O75123 536 aa16.06■□□□□ 0.16
SDC4-201ENST00000372733 PGRP06401 933 aa16.06■□□□□ 0.16
SDC4-201ENST00000372733 TGM1P22735 817 aa16.06■□□□□ 0.16
SDC4-201ENST00000372733 PSMB9P28065 219 aa16.06■□□□□ 0.16
SDC4-201ENST00000372733 CD6P30203 668 aa16.06■□□□□ 0.16
SDC4-201ENST00000372733 NRIP1P48552 1158 aa16.06■□□□□ 0.16
SDC4-201ENST00000372733 KCNQ1P51787 676 aa16.06■□□□□ 0.16
SDC4-201ENST00000372733 CLCN7P51798 805 aa16.06■□□□□ 0.16
SDC4-201ENST00000372733 GPR149Q86SP6 731 aa16.06■□□□□ 0.16
SDC4-201ENST00000372733 ADCK1Q86TW2 530 aa16.06■□□□□ 0.16
SDC4-201ENST00000372733 S100ZQ8WXG8 99 aa16.06■□□□□ 0.16
SDC4-201ENST00000372733 PARK7Q99497 189 aaKnown RBP16.06■□□□□ 0.16
SDC4-201ENST00000372733 BTBD2Q9BX70 525 aa16.06■□□□□ 0.16
SDC4-201ENST00000372733 ELOVL2Q9NXB9 296 aa16.06■□□□□ 0.16
SDC4-201ENST00000372733 UBA2Q9UBT2 640 aaPredicted RBP16.06■□□□□ 0.16
SDC4-201ENST00000372733 VPS9D1Q9Y2B5 631 aa16.06■□□□□ 0.16
SDC4-201ENST00000372733 PCDHGA10Q9Y5H3 936 aa16.06■□□□□ 0.16
SDC4-201ENST00000372733 ORC6Q9Y5N6 252 aa16.06■□□□□ 0.16
SDC4-201ENST00000372733 MOXD2PA6NHM9 499 aa16.06■□□□□ 0.16
SDC4-201ENST00000372733 SLC16A6O15403 523 aa16.06■□□□□ 0.16
SDC4-201ENST00000372733 INSIG1O15503 277 aa16.06■□□□□ 0.16
SDC4-201ENST00000372733 DNAJB5O75953 348 aa16.06■□□□□ 0.16
SDC4-201ENST00000372733 B3GALT4O96024 378 aa16.06■□□□□ 0.16
SDC4-201ENST00000372733 OTCP00480 354 aa16.06■□□□□ 0.16
SDC4-201ENST00000372733 ITGB6P18564 788 aa16.06■□□□□ 0.16
SDC4-201ENST00000372733 IGFBP5P24593 272 aa16.06■□□□□ 0.16
SDC4-201ENST00000372733 RYKP34925 604 aa16.06■□□□□ 0.16
SDC4-201ENST00000372733 GDF5P43026 501 aa16.06■□□□□ 0.16
SDC4-201ENST00000372733 TAF10Q12962 218 aa16.06■□□□□ 0.16
SDC4-201ENST00000372733 RUNDC3AQ59EK9 446 aa16.06■□□□□ 0.16
SDC4-201ENST00000372733 MORN1Q5T089 497 aa16.06■□□□□ 0.16
SDC4-201ENST00000372733 SUSD1Q6UWL2 747 aa16.06■□□□□ 0.16
SDC4-201ENST00000372733 P2RY8Q86VZ1 359 aa16.06■□□□□ 0.16
SDC4-201ENST00000372733 C8orf48Q96LL4 319 aa16.06■□□□□ 0.16
SDC4-201ENST00000372733 PSKH2Q96QS6 385 aa16.06■□□□□ 0.16
SDC4-201ENST00000372733 PTPN18Q99952 460 aa16.06■□□□□ 0.16
SDC4-201ENST00000372733 PSD2Q9BQI7 771 aa16.06■□□□□ 0.16
SDC4-201ENST00000372733 TRIT1Q9H3H1 467 aaKnown RBP16.06■□□□□ 0.16
SDC4-201ENST00000372733 CCSER2Q9H7U1 834 aa16.06■□□□□ 0.16
SDC4-201ENST00000372733 EIF3LQ9Y262 564 aaKnown RBP16.06■□□□□ 0.16
SDC4-201ENST00000372733 PCDHB14Q9Y5E9 798 aa16.06■□□□□ 0.16
SDC4-201ENST00000372733 A0A0U1RQF3 1178 aa16.05■□□□□ 0.16
SDC4-201ENST00000372733 ZBBXA8MT70 800 aa16.05■□□□□ 0.16
SDC4-201ENST00000372733 FADS2O95864 444 aaKnown RBP16.05■□□□□ 0.16
SDC4-201ENST00000372733 IGLV3-27P01718 113 aa16.05■□□□□ 0.16
SDC4-201ENST00000372733 TGFBR1P36897 503 aa16.05■□□□□ 0.16
SDC4-201ENST00000372733 MGAT3Q09327 533 aa16.05■□□□□ 0.16
SDC4-201ENST00000372733 ACOX1Q15067 660 aa16.05■□□□□ 0.16
SDC4-201ENST00000372733 CYP4Z1Q86W10 505 aa16.05■□□□□ 0.16
SDC4-201ENST00000372733 ZNF280BQ86YH2 543 aa16.05■□□□□ 0.16
SDC4-201ENST00000372733 FBLIM1Q8WUP2 373 aa16.05■□□□□ 0.16
SDC4-201ENST00000372733 ZNF566Q969W8 418 aa16.05■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 23.2 ms