RNA–Protein interactions for RNA: ENST00000356922.5

LIG4-201, Transcript of DNA ligase 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LIG4, Length 4,096 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG4-201ENST00000356922 PRAMEF9Q5VWM5 478 aa3.92□□□□□ -1.78
LIG4-201ENST00000356922 LYPLAL1Q5VWZ2 237 aa3.92□□□□□ -1.78
LIG4-201ENST00000356922 GUSBP11Q6P575 273 aa3.92□□□□□ -1.78
LIG4-201ENST00000356922 RAPH1Q70E73 1250 aa3.92□□□□□ -1.78
LIG4-201ENST00000356922 C11orf74Q86VG3 221 aa3.92□□□□□ -1.78
LIG4-201ENST00000356922 FSTL5Q8N475 847 aaPredicted RBP3.92□□□□□ -1.78
LIG4-201ENST00000356922 GOLGA6L1Q8N7Z2 621 aa3.92□□□□□ -1.78
LIG4-201ENST00000356922 GPR156Q8NFN8 814 aa3.92□□□□□ -1.78
LIG4-201ENST00000356922 ASZ1Q8WWH4 475 aa3.92□□□□□ -1.78
LIG4-201ENST00000356922 TFGQ92734 400 aaPredicted RBP3.92□□□□□ -1.78
LIG4-201ENST00000356922 PYCR2Q96C36 320 aa3.92□□□□□ -1.78
LIG4-201ENST00000356922 APOLD1Q96LR9 279 aa3.92□□□□□ -1.78
LIG4-201ENST00000356922 C12orf66Q96MD2 445 aa3.92□□□□□ -1.78
LIG4-201ENST00000356922 SH3GL2Q99962 352 aa3.92□□□□□ -1.78
LIG4-201ENST00000356922 ALG9Q9H6U8 611 aa3.92□□□□□ -1.78
LIG4-201ENST00000356922 ZNF395Q9H8N7 513 aaPredicted RBP3.92□□□□□ -1.78
LIG4-201ENST00000356922 TMBIM4Q9HC24 238 aa3.92□□□□□ -1.78
LIG4-201ENST00000356922 SLC40A1Q9NP59 571 aa3.92□□□□□ -1.78
LIG4-201ENST00000356922 ARGLU1Q9NWB6 273 aaPredicted RBP3.92□□□□□ -1.78
LIG4-201ENST00000356922 TOR4AQ9NXH8 423 aa3.92□□□□□ -1.78
LIG4-201ENST00000356922 SPHK1Q9NYA1 384 aa3.92□□□□□ -1.78
LIG4-201ENST00000356922 TMEM9Q9P0T7 183 aa3.92□□□□□ -1.78
LIG4-201ENST00000356922 LGALS13Q9UHV8 139 aa3.92□□□□□ -1.78
LIG4-201ENST00000356922 PCOLCE2Q9UKZ9 415 aa3.92□□□□□ -1.78
LIG4-201ENST00000356922 NOVA2Q9UNW9 492 aaKnown RBP3.92□□□□□ -1.78
LIG4-201ENST00000356922 SH2B3Q9UQQ2 575 aa3.92□□□□□ -1.78
LIG4-201ENST00000356922 PDE10AQ9Y233 779 aa3.92□□□□□ -1.78
LIG4-201ENST00000356922 PCDHB1Q9Y5F3 818 aa3.92□□□□□ -1.78
LIG4-201ENST00000356922 PRR5-ARHGAP8B1AHC4 643 aa3.92□□□□□ -1.78
LIG4-201ENST00000356922 CFAP99D6REC4 459 aa3.92□□□□□ -1.78
LIG4-201ENST00000356922 H3BM21 787 aa3.92□□□□□ -1.78
LIG4-201ENST00000356922 TAPBPO15533 448 aa3.92□□□□□ -1.78
LIG4-201ENST00000356922 HCRTR1O43613 425 aa3.92□□□□□ -1.78
LIG4-201ENST00000356922 C1orf105O95561 183 aa3.92□□□□□ -1.78
LIG4-201ENST00000356922 GUCA1CO95843 209 aa3.92□□□□□ -1.78
LIG4-201ENST00000356922 SLC16A8O95907 504 aa3.92□□□□□ -1.78
LIG4-201ENST00000356922 PYGLP06737 847 aa3.92□□□□□ -1.78
LIG4-201ENST00000356922 CTSBP07858 339 aa3.92□□□□□ -1.78
LIG4-201ENST00000356922 RALBP11234 206 aa3.92□□□□□ -1.78
LIG4-201ENST00000356922 F3P13726 295 aa3.92□□□□□ -1.78
LIG4-201ENST00000356922 HOXB3P14651 431 aaPredicted RBP3.92□□□□□ -1.78
LIG4-201ENST00000356922 HOXD12P35452 270 aa3.92□□□□□ -1.78
LIG4-201ENST00000356922 UBE2IP63279 158 aaKnown RBP3.92□□□□□ -1.78
LIG4-201ENST00000356922 DMTNQ08495 405 aa3.92□□□□□ -1.78
LIG4-201ENST00000356922 PDAP1Q13442 181 aaKnown RBP3.92□□□□□ -1.78
LIG4-201ENST00000356922 GPR18Q14330 331 aa3.92□□□□□ -1.78
LIG4-201ENST00000356922 KRT33BQ14525 404 aa3.92□□□□□ -1.78
LIG4-201ENST00000356922 RNF187Q5TA31 235 aaPredicted RBP3.92□□□□□ -1.78
LIG4-201ENST00000356922 FAM45BPQ6NSW5 357 aa3.92□□□□□ -1.78
LIG4-201ENST00000356922 OGFOD3Q6PK18 319 aa3.92□□□□□ -1.78
LIG4-201ENST00000356922 TIFABQ6ZNK6 161 aa3.92□□□□□ -1.78
LIG4-201ENST00000356922 DCP2Q8IU60 420 aaKnown RBP3.92□□□□□ -1.78
LIG4-201ENST00000356922 BANPQ8N9N5 519 aa3.92□□□□□ -1.78
LIG4-201ENST00000356922 CEP76Q8TAP6 659 aa3.92□□□□□ -1.78
LIG4-201ENST00000356922 FAM45AQ8TCE6 357 aa3.92□□□□□ -1.78
LIG4-201ENST00000356922 ZDHHC1Q8WTX9 485 aa3.92□□□□□ -1.78
LIG4-201ENST00000356922 INPP5DQ92835 1189 aa3.92□□□□□ -1.78
LIG4-201ENST00000356922 TIMM29Q9BSF4 260 aa3.92□□□□□ -1.78
LIG4-201ENST00000356922 MECRQ9BV79 373 aa3.92□□□□□ -1.78
LIG4-201ENST00000356922 EDEM2Q9BV94 578 aa3.92□□□□□ -1.78
LIG4-201ENST00000356922 NUSAP1Q9BXS6 441 aaKnown RBP3.92□□□□□ -1.78
LIG4-201ENST00000356922 OGFRQ9NZT2 677 aa3.92□□□□□ -1.78
LIG4-201ENST00000356922 FETUBQ9UGM5 382 aa3.92□□□□□ -1.78
LIG4-201ENST00000356922 KLHL20Q9Y2M5 609 aa3.92□□□□□ -1.78
LIG4-201ENST00000356922 RNF215Q9Y6U7 377 aa3.92□□□□□ -1.78
LIG4-201ENST00000356922 SEC16AO15027 2179 aa3.92□□□□□ -1.78
LIG4-201ENST00000356922 AHCTF1Q8WYP5 2266 aa3.92□□□□□ -1.78
LIG4-201ENST00000356922 UBXN8O00124 270 aa3.92□□□□□ -1.78
LIG4-201ENST00000356922 TOR1BO14657 336 aa3.92□□□□□ -1.78
LIG4-201ENST00000356922 KIF1CO43896 1103 aaKnown RBP3.92□□□□□ -1.78
LIG4-201ENST00000356922 SIX3O95343 332 aaPredicted RBP3.92□□□□□ -1.78
LIG4-201ENST00000356922 TYRP1P17643 537 aa3.92□□□□□ -1.78
LIG4-201ENST00000356922 KRT15P19012 456 aa3.92□□□□□ -1.78
LIG4-201ENST00000356922 TFEBP19484 476 aa3.92□□□□□ -1.78
LIG4-201ENST00000356922 KELP23276 732 aa3.92□□□□□ -1.78
LIG4-201ENST00000356922 PSMB5P28074 263 aa3.92□□□□□ -1.78
LIG4-201ENST00000356922 PEBP1P30086 187 aaKnown RBP3.92□□□□□ -1.78
LIG4-201ENST00000356922 LSSP48449 732 aa3.92□□□□□ -1.78
LIG4-201ENST00000356922 GYS2P54840 703 aa3.92□□□□□ -1.78
LIG4-201ENST00000356922 SLC12A2P55011 1212 aa3.92□□□□□ -1.78
LIG4-201ENST00000356922 OR1D5P58170 312 aa3.92□□□□□ -1.78
LIG4-201ENST00000356922 MAGOHP61326 146 aaKnown RBP3.92□□□□□ -1.78
LIG4-201ENST00000356922 SLC18A2Q05940 514 aa3.92□□□□□ -1.78
LIG4-201ENST00000356922 ILF3Q12906 894 aaKnown RBP eCLIP3.92□□□□□ -1.78
LIG4-201ENST00000356922 TEAD4Q15561 434 aa3.92□□□□□ -1.78
LIG4-201ENST00000356922 MAP9Q49MG5 647 aa3.92□□□□□ -1.78
LIG4-201ENST00000356922 SUSD1Q6UWL2 747 aa3.92□□□□□ -1.78
LIG4-201ENST00000356922 ZNF574Q6ZN55 896 aaPredicted RBP3.92□□□□□ -1.78
LIG4-201ENST00000356922 CEP128Q6ZU80 1094 aa3.92□□□□□ -1.78
LIG4-201ENST00000356922 HDXQ7Z353 690 aa3.92□□□□□ -1.78
LIG4-201ENST00000356922 TAX1BP1Q86VP1 789 aa3.92□□□□□ -1.78
LIG4-201ENST00000356922 HM13Q8TCT9 377 aa3.92□□□□□ -1.78
LIG4-201ENST00000356922 TLCD1Q96CP7 247 aa3.92□□□□□ -1.78
LIG4-201ENST00000356922 ZNF514Q96K75 400 aaPredicted RBP3.92□□□□□ -1.78
LIG4-201ENST00000356922 ATOH8Q96SQ7 321 aa3.92□□□□□ -1.78
LIG4-201ENST00000356922 PKP4Q99569 1192 aa3.92□□□□□ -1.78
LIG4-201ENST00000356922 CCDC77Q9BR77 488 aa3.92□□□□□ -1.78
LIG4-201ENST00000356922 HGH1Q9BTY7 390 aa3.92□□□□□ -1.78
LIG4-201ENST00000356922 C20orf27Q9GZN8 174 aa3.92□□□□□ -1.78
LIG4-201ENST00000356922 ATG10Q9H0Y0 220 aa3.92□□□□□ -1.78
Retrieved 100 of 20,778 RNA–protein pairs in 23.9 ms