RNA–Protein interactions for RNA: ENST00000355477.10

CLN3-202, Transcript of CLN3, battenin, humanhuman

TSL 1 (best) BASIC

Gene CLN3, Length 1,173 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-202ENST00000355477 VRK3Q8IV63 474 aa17.84■□□□□ 0.45
CLN3-202ENST00000355477 ADGRF3Q8IZF5 1079 aa17.84■□□□□ 0.45
CLN3-202ENST00000355477 KRT222Q8N1A0 295 aa17.84■□□□□ 0.45
CLN3-202ENST00000355477 MPP5Q8N3R9 675 aa17.84■□□□□ 0.45
CLN3-202ENST00000355477 SLC45A3Q96JT2 553 aa17.84■□□□□ 0.45
CLN3-202ENST00000355477 MRM3Q9HC36 420 aaKnown RBP17.84■□□□□ 0.45
CLN3-202ENST00000355477 PDE7BQ9NP56 450 aa17.84■□□□□ 0.45
CLN3-202ENST00000355477 LNPEPQ9UIQ6 1025 aa17.84■□□□□ 0.45
CLN3-202ENST00000355477 RARRES3Q9UL19 164 aa17.84■□□□□ 0.45
CLN3-202ENST00000355477 ICKQ9UPZ9 632 aa17.84■□□□□ 0.45
CLN3-202ENST00000355477 ASF1AQ9Y294 204 aa17.84■□□□□ 0.45
CLN3-202ENST00000355477 RPS6KL1Q9Y6S9 549 aa17.84■□□□□ 0.45
CLN3-202ENST00000355477 PGRMC1O00264 195 aaKnown RBP17.83■□□□□ 0.44
CLN3-202ENST00000355477 VAPBO95292 243 aa17.83■□□□□ 0.44
CLN3-202ENST00000355477 CDH3P22223 829 aa17.83■□□□□ 0.44
CLN3-202ENST00000355477 PPARGP37231 505 aaPredicted RBP17.83■□□□□ 0.44
CLN3-202ENST00000355477 TTPAP49638 278 aa17.83■□□□□ 0.44
CLN3-202ENST00000355477 ACY1Q03154 408 aa17.83■□□□□ 0.44
CLN3-202ENST00000355477 SYTL3Q4VX76 610 aa17.83■□□□□ 0.44
CLN3-202ENST00000355477 AARS2Q5JTZ9 985 aaKnown RBP17.83■□□□□ 0.44
CLN3-202ENST00000355477 CCDC137Q6PK04 289 aaKnown RBP17.83■□□□□ 0.44
CLN3-202ENST00000355477 CARFQ8N187 725 aa17.83■□□□□ 0.44
CLN3-202ENST00000355477 CPT1BQ92523 772 aa17.83■□□□□ 0.44
CLN3-202ENST00000355477 KIAA1143Q96AT1 154 aaPredicted RBP17.83■□□□□ 0.44
CLN3-202ENST00000355477 MED8Q96G25 268 aa17.83■□□□□ 0.44
CLN3-202ENST00000355477 TRIM56Q9BRZ2 755 aaKnown RBP17.83■□□□□ 0.44
CLN3-202ENST00000355477 CARD6Q9BX69 1037 aa17.83■□□□□ 0.44
CLN3-202ENST00000355477 C1GALT1Q9NS00 363 aa17.83■□□□□ 0.44
CLN3-202ENST00000355477 SOX13Q9UN79 622 aa17.83■□□□□ 0.44
CLN3-202ENST00000355477 BTRCQ9Y297 605 aa17.83■□□□□ 0.44
CLN3-202ENST00000355477 MRPS18BQ9Y676 258 aaKnown RBP17.83■□□□□ 0.44
CLN3-202ENST00000355477 BSNQ9UPA5 3926 aa17.82■□□□□ 0.44
CLN3-202ENST00000355477 USP27XA6NNY8 438 aa17.82■□□□□ 0.44
CLN3-202ENST00000355477 GOLGA8KD6RF30 607 aa17.82■□□□□ 0.44
CLN3-202ENST00000355477 GOLGA8TH3BQL2 631 aa17.82■□□□□ 0.44
CLN3-202ENST00000355477 MATN2O00339 956 aa17.82■□□□□ 0.44
CLN3-202ENST00000355477 PRMT5O14744 637 aaPredicted RBP17.82■□□□□ 0.44
CLN3-202ENST00000355477 GPC4O75487 556 aa17.82■□□□□ 0.44
CLN3-202ENST00000355477 TMEM63AO94886 807 aa17.82■□□□□ 0.44
CLN3-202ENST00000355477 NTRK1P04629 796 aa17.82■□□□□ 0.44
CLN3-202ENST00000355477 ST6GAL1P15907 406 aa17.82■□□□□ 0.44
CLN3-202ENST00000355477 TUBB4BP68371 445 aa17.82■□□□□ 0.44
CLN3-202ENST00000355477 PLOD1Q02809 727 aaPredicted RBP17.82■□□□□ 0.44
CLN3-202ENST00000355477 HSPA14Q0VDF9 509 aa17.82■□□□□ 0.44
CLN3-202ENST00000355477 TUBB2AQ13885 445 aa17.82■□□□□ 0.44
CLN3-202ENST00000355477 UNC5AQ6ZN44 842 aa17.82■□□□□ 0.44
CLN3-202ENST00000355477 TBC1D21Q8IYX1 336 aa17.82■□□□□ 0.44
CLN3-202ENST00000355477 SLC22A15Q8IZD6 547 aa17.82■□□□□ 0.44
CLN3-202ENST00000355477 OR5K2Q8NHB8 316 aa17.82■□□□□ 0.44
CLN3-202ENST00000355477 ACTRT1Q8TDG2 376 aa17.82■□□□□ 0.44
CLN3-202ENST00000355477 ZNF501Q96CX3 271 aaPredicted RBP17.82■□□□□ 0.44
CLN3-202ENST00000355477 STAMBPL1Q96FJ0 436 aa17.82■□□□□ 0.44
CLN3-202ENST00000355477 NAP1L3Q99457 506 aaPredicted RBP17.82■□□□□ 0.44
CLN3-202ENST00000355477 TUBB2BQ9BVA1 445 aa17.82■□□□□ 0.44
CLN3-202ENST00000355477 PITPNM3Q9BZ71 974 aa17.82■□□□□ 0.44
CLN3-202ENST00000355477 P2RY12Q9H244 342 aa17.82■□□□□ 0.44
CLN3-202ENST00000355477 AKIRIN1Q9H9L7 192 aaPredicted RBP17.82■□□□□ 0.44
CLN3-202ENST00000355477 SOHLH2Q9NX45 425 aa17.82■□□□□ 0.44
CLN3-202ENST00000355477 PLAGL1Q9UM63 463 aa17.82■□□□□ 0.44
CLN3-202ENST00000355477 SNX12Q9UMY4 172 aa17.82■□□□□ 0.44
CLN3-202ENST00000355477 TDRKHQ9Y2W6 561 aaKnown RBP17.82■□□□□ 0.44
CLN3-202ENST00000355477 PCM1Q15154 2024 aa17.81■□□□□ 0.44
CLN3-202ENST00000355477 CCDC88CQ9P219 2028 aa17.81■□□□□ 0.44
CLN3-202ENST00000355477 ZNF891A8MT65 544 aaPredicted RBP17.81■□□□□ 0.44
CLN3-202ENST00000355477 TERTO14746 1132 aaKnown RBP17.81■□□□□ 0.44
CLN3-202ENST00000355477 KIF5CO60282 957 aa17.81■□□□□ 0.44
CLN3-202ENST00000355477 FAM87AP0C7U9 286 aa17.81■□□□□ 0.44
CLN3-202ENST00000355477 PRKAR1AP10644 381 aa17.81■□□□□ 0.44
CLN3-202ENST00000355477 PVRP15151 417 aa17.81■□□□□ 0.44
CLN3-202ENST00000355477 AOAHP28039 575 aa17.81■□□□□ 0.44
CLN3-202ENST00000355477 DLSTP36957 453 aa17.81■□□□□ 0.44
CLN3-202ENST00000355477 CYB5D1Q6P9G0 228 aa17.81■□□□□ 0.44
CLN3-202ENST00000355477 BPHLQ86WA6 291 aaPredicted RBP17.81■□□□□ 0.44
CLN3-202ENST00000355477 ASZ1Q8WWH4 475 aa17.81■□□□□ 0.44
CLN3-202ENST00000355477 FCRL4Q96PJ5 515 aa17.81■□□□□ 0.44
CLN3-202ENST00000355477 ARHGAP9Q9BRR9 750 aa17.81■□□□□ 0.44
CLN3-202ENST00000355477 EFHD1Q9BUP0 239 aa17.81■□□□□ 0.44
CLN3-202ENST00000355477 KLHL25Q9H0H3 589 aa17.81■□□□□ 0.44
CLN3-202ENST00000355477 ACTR10Q9NZ32 417 aa17.81■□□□□ 0.44
CLN3-202ENST00000355477 POLG2Q9UHN1 485 aa17.81■□□□□ 0.44
CLN3-202ENST00000355477 CROTQ9UKG9 612 aa17.81■□□□□ 0.44
CLN3-202ENST00000355477 FER1L5A0AVI2 2057 aa17.81■□□□□ 0.44
CLN3-202ENST00000355477 C2orf74A8MZ97 194 aa17.8■□□□□ 0.44
CLN3-202ENST00000355477 F8W8V4 182 aa17.8■□□□□ 0.44
CLN3-202ENST00000355477 GOLGA8MH3BSY2 632 aa17.8■□□□□ 0.44
CLN3-202ENST00000355477 PHF2O75151 1096 aa17.8■□□□□ 0.44
CLN3-202ENST00000355477 NDUFS3O75489 264 aa17.8■□□□□ 0.44
CLN3-202ENST00000355477 SLCO2B1O94956 709 aa17.8■□□□□ 0.44
CLN3-202ENST00000355477 SHMT2P34897 504 aa17.8■□□□□ 0.44
CLN3-202ENST00000355477 SARNPP82979 210 aaKnown RBP17.8■□□□□ 0.44
CLN3-202ENST00000355477 ABRQ12979 859 aa17.8■□□□□ 0.44
CLN3-202ENST00000355477 PRAMEF17Q5VTA0 474 aa17.8■□□□□ 0.44
CLN3-202ENST00000355477 PTRHD1Q6GMV3 140 aaKnown RBP17.8■□□□□ 0.44
CLN3-202ENST00000355477 FLVCR1-AS1Q8TAF5 88 aa17.8■□□□□ 0.44
CLN3-202ENST00000355477 STARD8Q92502 1023 aa17.8■□□□□ 0.44
CLN3-202ENST00000355477 PDLIM2Q96JY6 352 aa17.8■□□□□ 0.44
CLN3-202ENST00000355477 TRAPPC9Q96Q05 1148 aa17.8■□□□□ 0.44
CLN3-202ENST00000355477 TSSK1BQ9BXA7 367 aa17.8■□□□□ 0.44
CLN3-202ENST00000355477 KCND1Q9NSA2 647 aa17.8■□□□□ 0.44
CLN3-202ENST00000355477 SPHK1Q9NYA1 384 aa17.8■□□□□ 0.44
Retrieved 100 of 20,778 RNA–protein pairs in 43.4 ms