RNA–Protein interactions for RNA: ENST00000351842.8

USP4-202, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 1 (best) BASIC

Gene USP4, Length 3,222 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-202ENST00000351842 VPS35Q96QK1 796 aa8.99□□□□□ -0.97
USP4-202ENST00000351842 TSSK1BQ9BXA7 367 aa8.99□□□□□ -0.97
USP4-202ENST00000351842 PRMT8Q9NR22 394 aaPredicted RBP8.99□□□□□ -0.97
USP4-202ENST00000351842 NCKIPSDQ9NZQ3 722 aa8.99□□□□□ -0.97
USP4-202ENST00000351842 TAAR2Q9P1P5 351 aa8.99□□□□□ -0.97
USP4-202ENST00000351842 NCDNQ9UBB6 729 aa8.99□□□□□ -0.97
USP4-202ENST00000351842 LGALS13Q9UHV8 139 aa8.99□□□□□ -0.97
USP4-202ENST00000351842 ANGPTL3Q9Y5C1 460 aa8.99□□□□□ -0.97
USP4-202ENST00000351842 GSAPA4D1B5 854 aa8.99□□□□□ -0.97
USP4-202ENST00000351842 VEGFDO43915 354 aa8.99□□□□□ -0.97
USP4-202ENST00000351842 GLRA3O75311 464 aa8.99□□□□□ -0.97
USP4-202ENST00000351842 KLHL2O95198 593 aa8.99□□□□□ -0.97
USP4-202ENST00000351842 GSTA1P08263 222 aa8.99□□□□□ -0.97
USP4-202ENST00000351842 MYL2P10916 166 aa8.99□□□□□ -0.97
USP4-202ENST00000351842 CPA3P15088 417 aa8.99□□□□□ -0.97
USP4-202ENST00000351842 CD1DP15813 335 aa8.99□□□□□ -0.97
USP4-202ENST00000351842 PSMB5P28074 263 aa8.99□□□□□ -0.97
USP4-202ENST00000351842 GRIA3P42263 894 aa8.99□□□□□ -0.97
USP4-202ENST00000351842 MEF2AQ02078 507 aaPredicted RBP8.99□□□□□ -0.97
USP4-202ENST00000351842 HLA-BQ31612 363 aa8.99□□□□□ -0.97
USP4-202ENST00000351842 KYAT3Q6YP21 454 aaKnown RBP8.99□□□□□ -0.97
USP4-202ENST00000351842 ZNF765Q7L2R6 523 aa8.99□□□□□ -0.97
USP4-202ENST00000351842 ABI3BPQ7Z7G0 1075 aa8.99□□□□□ -0.97
USP4-202ENST00000351842 ISCA2Q86U28 154 aa8.99□□□□□ -0.97
USP4-202ENST00000351842 RIBC1Q8N443 379 aaPredicted RBP8.99□□□□□ -0.97
USP4-202ENST00000351842 INSM2Q96T92 566 aaPredicted RBP8.99□□□□□ -0.97
USP4-202ENST00000351842 PHOX2BQ99453 314 aa8.99□□□□□ -0.97
USP4-202ENST00000351842 IGSF5Q9NSI5 407 aa8.99□□□□□ -0.97
USP4-202ENST00000351842 SMG5Q9UPR3 1016 aaKnown RBP8.99□□□□□ -0.97
USP4-202ENST00000351842 PLXNA2O75051 1894 aa8.99□□□□□ -0.97
USP4-202ENST00000351842 CCDC189A1A4V9 331 aa8.99□□□□□ -0.97
USP4-202ENST00000351842 AGAP14A8MT82 685 aa8.99□□□□□ -0.97
USP4-202ENST00000351842 ARHGEF33A8MVX0 844 aa8.99□□□□□ -0.97
USP4-202ENST00000351842 YY2O15391 372 aa8.99□□□□□ -0.97
USP4-202ENST00000351842 GDF9O60383 454 aa8.99□□□□□ -0.97
USP4-202ENST00000351842 SLC16A8O95907 504 aa8.99□□□□□ -0.97
USP4-202ENST00000351842 S100BP04271 92 aaPredicted RBP8.99□□□□□ -0.97
USP4-202ENST00000351842 SERPIND1P05546 499 aa8.99□□□□□ -0.97
USP4-202ENST00000351842 CNTFP26441 200 aa8.99□□□□□ -0.97
USP4-202ENST00000351842 HALP42357 657 aa8.99□□□□□ -0.97
USP4-202ENST00000351842 SERPINB4P48594 390 aa8.99□□□□□ -0.97
USP4-202ENST00000351842 ARRB1P49407 418 aaPredicted RBP8.99□□□□□ -0.97
USP4-202ENST00000351842 GNGT1P63211 74 aa8.99□□□□□ -0.97
USP4-202ENST00000351842 NAB1Q13506 487 aa8.99□□□□□ -0.97
USP4-202ENST00000351842 NAE1Q13564 534 aa8.99□□□□□ -0.97
USP4-202ENST00000351842 RIPOR1Q6ZS17 1223 aa8.99□□□□□ -0.97
USP4-202ENST00000351842 TDRPQ86YL5 185 aa8.99□□□□□ -0.97
USP4-202ENST00000351842 SYT12Q8IV01 421 aa8.99□□□□□ -0.97
USP4-202ENST00000351842 PLD3Q8IV08 490 aa8.99□□□□□ -0.97
USP4-202ENST00000351842 EID2Q8N6I1 236 aa8.99□□□□□ -0.97
USP4-202ENST00000351842 MFSD2AQ8NA29 543 aa8.99□□□□□ -0.97
USP4-202ENST00000351842 CADM4Q8NFZ8 388 aa8.99□□□□□ -0.97
USP4-202ENST00000351842 MTFMTQ96DP5 389 aaKnown RBP8.99□□□□□ -0.97
USP4-202ENST00000351842 PPM1MQ96MI6 270 aa8.99□□□□□ -0.97
USP4-202ENST00000351842 FAM126AQ9BYI3 521 aaPredicted RBP8.99□□□□□ -0.97
USP4-202ENST00000351842 SMOXQ9NWM0 555 aa8.99□□□□□ -0.97
USP4-202ENST00000351842 EMCNQ9ULC0 261 aa8.99□□□□□ -0.97
USP4-202ENST00000351842 DMTF1Q9Y222 760 aa8.99□□□□□ -0.97
USP4-202ENST00000351842 PLLPQ9Y342 182 aa8.99□□□□□ -0.97
USP4-202ENST00000351842 SNRNP200O75643 2136 aaKnown RBP8.98□□□□□ -0.97
USP4-202ENST00000351842 A0A1B0GTW7 788 aa8.98□□□□□ -0.97
USP4-202ENST00000351842 A8MU76 341 aa8.98□□□□□ -0.97
USP4-202ENST00000351842 FFAR3O14843 346 aa8.98□□□□□ -0.97
USP4-202ENST00000351842 GPR42O15529 346 aa8.98□□□□□ -0.97
USP4-202ENST00000351842 TSPAN12O95859 305 aa8.98□□□□□ -0.97
USP4-202ENST00000351842 MPOP05164 745 aa8.98□□□□□ -0.97
USP4-202ENST00000351842 SERPINB3P29508 390 aa8.98□□□□□ -0.97
USP4-202ENST00000351842 SKIV2L2P42285 1042 aaKnown RBP8.98□□□□□ -0.97
USP4-202ENST00000351842 CLDN6P56747 220 aa8.98□□□□□ -0.97
USP4-202ENST00000351842 PTK2BQ14289 1009 aa8.98□□□□□ -0.97
USP4-202ENST00000351842 FASTKQ14296 549 aaKnown RBP8.98□□□□□ -0.97
USP4-202ENST00000351842 NKAIN2Q5VXU1 208 aa8.98□□□□□ -0.97
USP4-202ENST00000351842 TTC23LQ6PF05 361 aa8.98□□□□□ -0.97
USP4-202ENST00000351842 CYS1Q717R9 158 aa8.98□□□□□ -0.97
USP4-202ENST00000351842 CCDC91Q7Z6B0 441 aa8.98□□□□□ -0.97
USP4-202ENST00000351842 FBXO39Q8N4B4 442 aa8.98□□□□□ -0.97
USP4-202ENST00000351842 SNX31Q8N9S9 440 aa8.98□□□□□ -0.97
USP4-202ENST00000351842 SKA1Q96BD8 255 aa8.98□□□□□ -0.97
USP4-202ENST00000351842 TLCD1Q96CP7 247 aa8.98□□□□□ -0.97
USP4-202ENST00000351842 TBC1D10AQ9BXI6 508 aa8.98□□□□□ -0.97
USP4-202ENST00000351842 SLC17A4Q9Y2C5 497 aa8.98□□□□□ -0.97
USP4-202ENST00000351842 ZFC3H1O60293 1989 aaKnown RBP8.98□□□□□ -0.97
USP4-202ENST00000351842 LOC400499M0QZD8 3231 aa8.98□□□□□ -0.97
USP4-202ENST00000351842 TCP11X1B4DZS4 312 aa8.98□□□□□ -0.97
USP4-202ENST00000351842 PLIN3O60664 434 aa8.98□□□□□ -0.97
USP4-202ENST00000351842 TCEA3O75764 348 aa8.98□□□□□ -0.97
USP4-202ENST00000351842 VIPP01282 170 aa8.98□□□□□ -0.97
USP4-202ENST00000351842 CHRNGP07510 517 aa8.98□□□□□ -0.97
USP4-202ENST00000351842 HNF4AP41235 474 aa8.98□□□□□ -0.97
USP4-202ENST00000351842 TGFBIQ15582 683 aa8.98□□□□□ -0.97
USP4-202ENST00000351842 RBBP7Q16576 425 aa8.98□□□□□ -0.97
USP4-202ENST00000351842 AGBL2Q5U5Z8 902 aa8.98□□□□□ -0.97
USP4-202ENST00000351842 ZNF438Q7Z4V0 828 aa8.98□□□□□ -0.97
USP4-202ENST00000351842 WDR5BQ86VZ2 330 aa8.98□□□□□ -0.97
USP4-202ENST00000351842 NKAPQ8N5F7 415 aaKnown RBP8.98□□□□□ -0.97
USP4-202ENST00000351842 OR2L2Q8NH16 312 aa8.98□□□□□ -0.97
USP4-202ENST00000351842 HM13Q8TCT9 377 aa8.98□□□□□ -0.97
USP4-202ENST00000351842 TRPC4APQ8TEL6 797 aa8.98□□□□□ -0.97
USP4-202ENST00000351842 NELL1Q92832 810 aa8.98□□□□□ -0.97
USP4-202ENST00000351842 RMDN2Q96LZ7 410 aa8.98□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 42.1 ms