RNA–Protein interactions for RNA: ENST00000637968.1

SCN1A-216, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5

Gene SCN1A, Length 4,614 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-216ENST00000637968 RBM4BQ9BQ04 359 aaKnown RBP5.66□□□□□ -1.5
SCN1A-216ENST00000637968 CLSTN3Q9BQT9 956 aa5.66□□□□□ -1.5
SCN1A-216ENST00000637968 RBM4Q9BWF3 364 aaKnown RBP5.66□□□□□ -1.5
SCN1A-216ENST00000637968 CNTN3Q9P232 1028 aa5.66□□□□□ -1.5
SCN1A-216ENST00000637968 EXTL2Q9UBQ6 330 aa5.66□□□□□ -1.5
SCN1A-216ENST00000637968 ABT1Q9ULW3 272 aaKnown RBP5.66□□□□□ -1.5
SCN1A-216ENST00000637968 NRCAMQ92823 1304 aa5.66□□□□□ -1.5
SCN1A-216ENST00000637968 LOC390937A0A1W2PQ73 354 aa5.65□□□□□ -1.5
SCN1A-216ENST00000637968 TCRBV3S1A0A5B6 114 aa5.65□□□□□ -1.5
SCN1A-216ENST00000637968 OR6C74A6NCV1 312 aa5.65□□□□□ -1.5
SCN1A-216ENST00000637968 POM121BA6NF01 834 aa5.65□□□□□ -1.5
SCN1A-216ENST00000637968 TRABD2BA6NFA1 517 aa5.65□□□□□ -1.5
SCN1A-216ENST00000637968 METTL15A6NJ78 407 aa5.65□□□□□ -1.5
SCN1A-216ENST00000637968 F5H6K3 240 aa5.65□□□□□ -1.5
SCN1A-216ENST00000637968 INMT-MINDY4F8WBC2 141 aa5.65□□□□□ -1.5
SCN1A-216ENST00000637968 NR5A2O00482 541 aa5.65□□□□□ -1.5
SCN1A-216ENST00000637968 NKRFO15226 690 aaKnown RBP eCLIP5.65□□□□□ -1.5
SCN1A-216ENST00000637968 TP73O15350 636 aa5.65□□□□□ -1.5
SCN1A-216ENST00000637968 KRT33AO76009 404 aa5.65□□□□□ -1.5
SCN1A-216ENST00000637968 NR2C1P13056 603 aa5.65□□□□□ -1.5
SCN1A-216ENST00000637968 SELLP14151 372 aa5.65□□□□□ -1.5
SCN1A-216ENST00000637968 CPB1P15086 417 aa5.65□□□□□ -1.5
SCN1A-216ENST00000637968 KLRC2P26717 231 aa5.65□□□□□ -1.5
SCN1A-216ENST00000637968 RARRES1P49788 294 aa5.65□□□□□ -1.5
SCN1A-216ENST00000637968 SPCS3P61009 180 aa5.65□□□□□ -1.5
SCN1A-216ENST00000637968 FPGSQ05932 587 aa5.65□□□□□ -1.5
SCN1A-216ENST00000637968 POU4F2Q12837 409 aa5.65□□□□□ -1.5
SCN1A-216ENST00000637968 FRG1Q14331 258 aaKnown RBP5.65□□□□□ -1.5
SCN1A-216ENST00000637968 SIX1Q15475 284 aaPredicted RBP5.65□□□□□ -1.5
SCN1A-216ENST00000637968 TATDN3Q17R31 274 aa5.65□□□□□ -1.5
SCN1A-216ENST00000637968 PITRM1Q5JRX3 1037 aa5.65□□□□□ -1.5
SCN1A-216ENST00000637968 NUDT18Q6ZVK8 323 aa5.65□□□□□ -1.5
SCN1A-216ENST00000637968 ZNF720Q7Z2F6 126 aa5.65□□□□□ -1.5
SCN1A-216ENST00000637968 MAMDC2Q7Z304 686 aaPredicted RBP5.65□□□□□ -1.5
SCN1A-216ENST00000637968 PIWIL4Q7Z3Z4 852 aaKnown RBP5.65□□□□□ -1.5
SCN1A-216ENST00000637968 CIR1Q86X95 450 aaPredicted RBP5.65□□□□□ -1.5
SCN1A-216ENST00000637968 KATNAL2Q8IYT4 538 aa5.65□□□□□ -1.5
SCN1A-216ENST00000637968 LPCAT1Q8NF37 534 aa5.65□□□□□ -1.5
SCN1A-216ENST00000637968 GATAD2BQ8WXI9 593 aa5.65□□□□□ -1.5
SCN1A-216ENST00000637968 NSMAFQ92636 917 aa5.65□□□□□ -1.5
SCN1A-216ENST00000637968 NXPE2Q96DL1 559 aa5.65□□□□□ -1.5
SCN1A-216ENST00000637968 BTN2A3PQ96KV6 586 aa5.65□□□□□ -1.5
SCN1A-216ENST00000637968 CSF3RQ99062 836 aa5.65□□□□□ -1.5
SCN1A-216ENST00000637968 VRK1Q99986 396 aaPredicted RBP5.65□□□□□ -1.5
SCN1A-216ENST00000637968 PTDSS2Q9BVG9 487 aa5.65□□□□□ -1.5
SCN1A-216ENST00000637968 UGT2B28Q9BY64 529 aa5.65□□□□□ -1.5
SCN1A-216ENST00000637968 REEP4Q9H6H4 257 aa5.65□□□□□ -1.5
SCN1A-216ENST00000637968 CPA4Q9UI42 421 aa5.65□□□□□ -1.5
SCN1A-216ENST00000637968 PCDHA6Q9UN73 950 aa5.65□□□□□ -1.5
SCN1A-216ENST00000637968 PPIEQ9UNP9 301 aaKnown RBP5.65□□□□□ -1.5
SCN1A-216ENST00000637968 PCDHA8Q9Y5H6 950 aa5.65□□□□□ -1.5
SCN1A-216ENST00000637968 A0A0A6YYJ9 748 aa5.65□□□□□ -1.5
SCN1A-216ENST00000637968 WASHC1A8K0Z3 465 aa5.65□□□□□ -1.5
SCN1A-216ENST00000637968 PLIN3O60664 434 aa5.65□□□□□ -1.5
SCN1A-216ENST00000637968 PRAMEF1O95521 474 aa5.65□□□□□ -1.5
SCN1A-216ENST00000637968 ZBTB48P10074 688 aaPredicted RBP5.65□□□□□ -1.5
SCN1A-216ENST00000637968 HLA-DPA1P20036 260 aa5.65□□□□□ -1.5
SCN1A-216ENST00000637968 DNASE1P24855 282 aa5.65□□□□□ -1.5
SCN1A-216ENST00000637968 ITGA1P56199 1179 aa5.65□□□□□ -1.5
SCN1A-216ENST00000637968 SMAD4Q13485 552 aaKnown RBP5.65□□□□□ -1.5
SCN1A-216ENST00000637968 FBXO48Q5FWF7 155 aa5.65□□□□□ -1.5
SCN1A-216ENST00000637968 XKR9Q5GH70 373 aa5.65□□□□□ -1.5
SCN1A-216ENST00000637968 FAM171A1Q5VUB5 890 aa5.65□□□□□ -1.5
SCN1A-216ENST00000637968 MAP1SQ66K74 1059 aaPredicted RBP5.65□□□□□ -1.5
SCN1A-216ENST00000637968 SPESP1Q6UW49 350 aa5.65□□□□□ -1.5
SCN1A-216ENST00000637968 MAMDC4Q6UXC1 1216 aa5.65□□□□□ -1.5
SCN1A-216ENST00000637968 SSX6Q7RTT6 188 aa5.65□□□□□ -1.5
SCN1A-216ENST00000637968 FAM35AQ86V20 835 aa5.65□□□□□ -1.5
SCN1A-216ENST00000637968 SFT2D1Q8WV19 159 aa5.65□□□□□ -1.5
SCN1A-216ENST00000637968 SCRN2Q96FV2 425 aa5.65□□□□□ -1.5
SCN1A-216ENST00000637968 OR52B2Q96RD2 323 aa5.65□□□□□ -1.5
SCN1A-216ENST00000637968 RBCK1Q9BYM8 510 aa5.65□□□□□ -1.5
SCN1A-216ENST00000637968 MROH8Q9H579 483 aa5.65□□□□□ -1.5
SCN1A-216ENST00000637968 IL1RAPQ9NPH3 570 aa5.65□□□□□ -1.5
SCN1A-216ENST00000637968 PAK5Q9P286 719 aa5.65□□□□□ -1.5
SCN1A-216ENST00000637968 JAG2Q9Y219 1238 aa5.65□□□□□ -1.5
SCN1A-216ENST00000637968 NFAT5O94916 1531 aa5.65□□□□□ -1.51
SCN1A-216ENST00000637968 PREX1Q8TCU6 1659 aa5.65□□□□□ -1.51
SCN1A-216ENST00000637968 A8MVJ9 347 aa5.65□□□□□ -1.51
SCN1A-216ENST00000637968 SLC1A7O00341 560 aa5.65□□□□□ -1.51
SCN1A-216ENST00000637968 DLGAP1O14490 977 aa5.65□□□□□ -1.51
SCN1A-216ENST00000637968 AP3D1O14617 1153 aa5.65□□□□□ -1.51
SCN1A-216ENST00000637968 LCMT2O60294 686 aaKnown RBP5.65□□□□□ -1.51
SCN1A-216ENST00000637968 LRIG2O94898 1065 aa5.65□□□□□ -1.51
SCN1A-216ENST00000637968 GNRH1P01148 92 aa5.65□□□□□ -1.51
SCN1A-216ENST00000637968 ITGAVP06756 1048 aa5.65□□□□□ -1.51
SCN1A-216ENST00000637968 ACSM4P0C7M7 580 aa5.65□□□□□ -1.51
SCN1A-216ENST00000637968 ZNF37AP17032 561 aaPredicted RBP5.65□□□□□ -1.51
SCN1A-216ENST00000637968 JUNDP17535 347 aa5.65□□□□□ -1.51
SCN1A-216ENST00000637968 TSPAN8P19075 237 aa5.65□□□□□ -1.51
SCN1A-216ENST00000637968 MAPK1P28482 360 aa5.65□□□□□ -1.51
SCN1A-216ENST00000637968 POU3F4P49335 361 aa5.65□□□□□ -1.51
SCN1A-216ENST00000637968 C2orf80Q0P641 193 aa5.65□□□□□ -1.51
SCN1A-216ENST00000637968 ELP6Q0PNE2 266 aa5.65□□□□□ -1.51
SCN1A-216ENST00000637968 BIKQ13323 160 aa5.65□□□□□ -1.51
SCN1A-216ENST00000637968 ALKBH1Q13686 389 aaKnown RBP5.65□□□□□ -1.51
SCN1A-216ENST00000637968 KCNC3Q14003 757 aa5.65□□□□□ -1.51
SCN1A-216ENST00000637968 BAATQ14032 418 aaPredicted RBP5.65□□□□□ -1.51
SCN1A-216ENST00000637968 TIGD6Q17RP2 521 aa5.65□□□□□ -1.51
SCN1A-216ENST00000637968 SMTNL2Q2TAL5 461 aa5.65□□□□□ -1.51
Retrieved 100 of 20,778 RNA–protein pairs in 32.2 ms