RNA–Protein interactions for RNA: ENST00000636147.1

CLN3-244, Transcript of CLN3, battenin, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLN3, Length 3,832 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-244ENST00000636147 LRRC49Q8IUZ0 686 aa10.85□□□□□ -0.67
CLN3-244ENST00000636147 RTL3Q8N8U3 475 aaKnown RBP10.85□□□□□ -0.67
CLN3-244ENST00000636147 OR6K2Q8NGY2 324 aa10.85□□□□□ -0.67
CLN3-244ENST00000636147 CDKN2AIPNLQ96HQ2 116 aa10.85□□□□□ -0.67
CLN3-244ENST00000636147 TEX37Q96LM6 180 aa10.85□□□□□ -0.67
CLN3-244ENST00000636147 GFM1Q96RP9 751 aaKnown RBP10.85□□□□□ -0.67
CLN3-244ENST00000636147 CNPPD1Q9BV87 410 aa10.85□□□□□ -0.67
CLN3-244ENST00000636147 FAM126AQ9BYI3 521 aaPredicted RBP10.85□□□□□ -0.67
CLN3-244ENST00000636147 AIG1Q9NVV5 245 aa10.85□□□□□ -0.67
CLN3-244ENST00000636147 ADPRHL2Q9NX46 363 aa10.85□□□□□ -0.67
CLN3-244ENST00000636147 ERVK13-1Q9NX77 482 aa10.85□□□□□ -0.67
CLN3-244ENST00000636147 TOR4AQ9NXH8 423 aa10.85□□□□□ -0.67
CLN3-244ENST00000636147 ENPP5Q9UJA9 477 aa10.85□□□□□ -0.67
CLN3-244ENST00000636147 STRCQ7RTU9 1775 aa10.85□□□□□ -0.67
CLN3-244ENST00000636147 IGKV6-21A0A0C4DH24 114 aa10.85□□□□□ -0.67
CLN3-244ENST00000636147 MGAT4DA6NG13 374 aa10.85□□□□□ -0.67
CLN3-244ENST00000636147 FAM25AB3EWG3 89 aa10.85□□□□□ -0.67
CLN3-244ENST00000636147 FAM25CB3EWG5 89 aa10.85□□□□□ -0.67
CLN3-244ENST00000636147 FAM25GB3EWG6 89 aa10.85□□□□□ -0.67
CLN3-244ENST00000636147 KERAO60938 352 aa10.85□□□□□ -0.67
CLN3-244ENST00000636147 CPNE3O75131 537 aaKnown RBP10.85□□□□□ -0.67
CLN3-244ENST00000636147 FSHRP23945 695 aa10.85□□□□□ -0.67
CLN3-244ENST00000636147 MAGEA12P43365 314 aa10.85□□□□□ -0.67
CLN3-244ENST00000636147 SLC15A1P46059 708 aa10.85□□□□□ -0.67
CLN3-244ENST00000636147 BOP1Q14137 746 aaKnown RBP10.85□□□□□ -0.67
CLN3-244ENST00000636147 SELPLGQ14242 412 aa10.85□□□□□ -0.67
CLN3-244ENST00000636147 TIMM50Q3ZCQ8 353 aa10.85□□□□□ -0.67
CLN3-244ENST00000636147 PYDC2Q56P42 97 aa10.85□□□□□ -0.67
CLN3-244ENST00000636147 ZNF544Q6NX49 715 aa10.85□□□□□ -0.67
CLN3-244ENST00000636147 SPATC1Q76KD6 591 aa10.85□□□□□ -0.67
CLN3-244ENST00000636147 SLC34A3Q8N130 599 aa10.85□□□□□ -0.67
CLN3-244ENST00000636147 WDR36Q8NI36 951 aaKnown RBP10.85□□□□□ -0.67
CLN3-244ENST00000636147 MAELQ96JY0 434 aaKnown RBP10.85□□□□□ -0.67
CLN3-244ENST00000636147 TM6SF2Q9BZW4 377 aa10.85□□□□□ -0.67
CLN3-244ENST00000636147 MFSD1Q9H3U5 465 aa10.85□□□□□ -0.67
CLN3-244ENST00000636147 SNTG1Q9NSN8 517 aa10.85□□□□□ -0.67
CLN3-244ENST00000636147 CARD8Q9Y2G2 431 aa10.85□□□□□ -0.67
CLN3-244ENST00000636147 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP10.85□□□□□ -0.67
CLN3-244ENST00000636147 TSPAN19P0C672 248 aa10.85□□□□□ -0.67
CLN3-244ENST00000636147 SMIM10L2AP0DMW4 78 aa10.85□□□□□ -0.67
CLN3-244ENST00000636147 SMIM10L2BP0DMW5 78 aa10.85□□□□□ -0.67
CLN3-244ENST00000636147 HCAR3P49019 387 aa10.85□□□□□ -0.67
CLN3-244ENST00000636147 TTPAP49638 278 aa10.85□□□□□ -0.67
CLN3-244ENST00000636147 FAM189BP81408 668 aa10.85□□□□□ -0.67
CLN3-244ENST00000636147 CYP4F8P98187 520 aa10.85□□□□□ -0.67
CLN3-244ENST00000636147 CTBSQ01459 385 aa10.85□□□□□ -0.67
CLN3-244ENST00000636147 SMARCB1Q12824 385 aa10.85□□□□□ -0.67
CLN3-244ENST00000636147 ZNF177Q13360 481 aaPredicted RBP10.85□□□□□ -0.67
CLN3-244ENST00000636147 IL18R1Q13478 541 aa10.85□□□□□ -0.67
CLN3-244ENST00000636147 GTF2H2Q13888 395 aa10.85□□□□□ -0.67
CLN3-244ENST00000636147 PKDCCQ504Y2 493 aa10.85□□□□□ -0.67
CLN3-244ENST00000636147 TJAP1Q5JTD0 557 aa10.85□□□□□ -0.67
CLN3-244ENST00000636147 GTF2H2CQ6P1K8 395 aa10.85□□□□□ -0.67
CLN3-244ENST00000636147 AFTPHQ6ULP2 937 aa10.85□□□□□ -0.67
CLN3-244ENST00000636147 KRTCAP2Q8N6L1 136 aa10.85□□□□□ -0.67
CLN3-244ENST00000636147 C1orf109Q9NX04 203 aa10.85□□□□□ -0.67
CLN3-244ENST00000636147 UBA2Q9UBT2 640 aaPredicted RBP10.85□□□□□ -0.67
CLN3-244ENST00000636147 MALT1Q9UDY8 824 aa10.85□□□□□ -0.67
CLN3-244ENST00000636147 SAMD4AQ9UPU9 718 aaKnown RBP10.85□□□□□ -0.67
CLN3-244ENST00000636147 PCDHB9Q9Y5E1 797 aa10.85□□□□□ -0.67
CLN3-244ENST00000636147 OAS3Q9Y6K5 1087 aaKnown RBP10.85□□□□□ -0.67
CLN3-244ENST00000636147 CNTRLQ7Z7A1 2325 aa10.85□□□□□ -0.67
CLN3-244ENST00000636147 RHOCP08134 193 aa10.84□□□□□ -0.67
CLN3-244ENST00000636147 ZNF7P17097 686 aaPredicted RBP10.84□□□□□ -0.67
CLN3-244ENST00000636147 LPOP22079 712 aaPredicted RBP10.84□□□□□ -0.67
CLN3-244ENST00000636147 XPAP23025 273 aaPredicted RBP10.84□□□□□ -0.67
CLN3-244ENST00000636147 PIGAP37287 484 aa10.84□□□□□ -0.67
CLN3-244ENST00000636147 SPIBQ01892 262 aa10.84□□□□□ -0.67
CLN3-244ENST00000636147 BRMS1LQ5PSV4 323 aa10.84□□□□□ -0.67
CLN3-244ENST00000636147 FAM151BQ6UXP7 276 aa10.84□□□□□ -0.67
CLN3-244ENST00000636147 SPRED1Q7Z699 444 aa10.84□□□□□ -0.67
CLN3-244ENST00000636147 ADAMTSL2Q86TH1 951 aa10.84□□□□□ -0.67
CLN3-244ENST00000636147 TMEM86AQ8N2M4 240 aa10.84□□□□□ -0.67
CLN3-244ENST00000636147 OR7D4Q8NG98 312 aa10.84□□□□□ -0.67
CLN3-244ENST00000636147 OR4F6Q8NGB9 312 aa10.84□□□□□ -0.67
CLN3-244ENST00000636147 GPR78Q96P69 363 aa10.84□□□□□ -0.67
CLN3-244ENST00000636147 YME1L1Q96TA2 773 aa10.84□□□□□ -0.67
CLN3-244ENST00000636147 MROQ9BYG7 248 aa10.84□□□□□ -0.67
CLN3-244ENST00000636147 ASB8Q9H765 288 aa10.84□□□□□ -0.67
CLN3-244ENST00000636147 WDR6Q9NNW5 1121 aaKnown RBP10.84□□□□□ -0.67
CLN3-244ENST00000636147 TIGARQ9NQ88 270 aa10.84□□□□□ -0.67
CLN3-244ENST00000636147 TLR8Q9NR97 1041 aaKnown RBP10.84□□□□□ -0.67
CLN3-244ENST00000636147 PAQR5Q9NXK6 330 aaPredicted RBP10.84□□□□□ -0.67
CLN3-244ENST00000636147 ZIM2Q9NZV7 527 aa10.84□□□□□ -0.67
CLN3-244ENST00000636147 CRNNQ9UBG3 495 aaPredicted RBP10.84□□□□□ -0.67
CLN3-244ENST00000636147 RPS6KA6Q9UK32 745 aa10.84□□□□□ -0.67
CLN3-244ENST00000636147 CDH7Q9ULB5 785 aa10.84□□□□□ -0.67
CLN3-244ENST00000636147 RNF6Q9Y252 685 aa10.84□□□□□ -0.67
CLN3-244ENST00000636147 PCDHGA3Q9Y5H0 932 aa10.84□□□□□ -0.67
CLN3-244ENST00000636147 PTCH2Q9Y6C5 1203 aa10.84□□□□□ -0.67
CLN3-244ENST00000636147 GOLGB1Q14789 3259 aaKnown RBP10.84□□□□□ -0.67
CLN3-244ENST00000636147 IRAK2O43187 625 aa10.84□□□□□ -0.67
CLN3-244ENST00000636147 TREHO43280 583 aa10.84□□□□□ -0.67
CLN3-244ENST00000636147 VIPP01282 170 aa10.84□□□□□ -0.67
CLN3-244ENST00000636147 RPLP0P05388 317 aaKnown RBP10.84□□□□□ -0.67
CLN3-244ENST00000636147 FABP3P05413 133 aa10.84□□□□□ -0.67
CLN3-244ENST00000636147 PGRP06401 933 aa10.84□□□□□ -0.67
CLN3-244ENST00000636147 HAPLN1P10915 354 aaPredicted RBP10.84□□□□□ -0.67
CLN3-244ENST00000636147 RAB25P57735 213 aa10.84□□□□□ -0.67
CLN3-244ENST00000636147 TYSND1Q2T9J0 566 aa10.84□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 63.8 ms