RNA–Protein interactions for RNA: ENST00000599322.5

LIG1-218, Transcript of DNA ligase 1, humanhuman

TSL 2

Gene LIG1, Length 620 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-218ENST00000599322 FNTAP49354 379 aa13.78□□□□□ -0.2
LIG1-218ENST00000599322 C19orf57Q0VDD7 668 aa13.78□□□□□ -0.2
LIG1-218ENST00000599322 BRD3Q15059 726 aa13.78□□□□□ -0.2
LIG1-218ENST00000599322 TGIF1Q15583 401 aa13.78□□□□□ -0.2
LIG1-218ENST00000599322 RNF187Q5TA31 235 aaPredicted RBP13.78□□□□□ -0.2
LIG1-218ENST00000599322 DUS1LQ6P1R4 473 aaKnown RBP13.78□□□□□ -0.2
LIG1-218ENST00000599322 NLGN4XQ8N0W4 816 aa13.78□□□□□ -0.2
LIG1-218ENST00000599322 NLGN4YQ8NFZ3 816 aaPredicted RBP13.78□□□□□ -0.2
LIG1-218ENST00000599322 OR4E2Q8NGC2 313 aa13.78□□□□□ -0.2
LIG1-218ENST00000599322 ASZ1Q8WWH4 475 aa13.78□□□□□ -0.2
LIG1-218ENST00000599322 JPH3Q8WXH2 748 aaPredicted RBP13.78□□□□□ -0.2
LIG1-218ENST00000599322 KLHL6Q8WZ60 621 aa13.78□□□□□ -0.2
LIG1-218ENST00000599322 RUNDC3BQ96NL0 473 aa13.78□□□□□ -0.2
LIG1-218ENST00000599322 OR6C1Q96RD1 312 aa13.78□□□□□ -0.2
LIG1-218ENST00000599322 CARD6Q9BX69 1037 aa13.78□□□□□ -0.2
LIG1-218ENST00000599322 FANCEQ9HB96 536 aa13.78□□□□□ -0.2
LIG1-218ENST00000599322 GNPTGQ9UJJ9 305 aa13.78□□□□□ -0.2
LIG1-218ENST00000599322 RARRES3Q9UL19 164 aa13.78□□□□□ -0.2
LIG1-218ENST00000599322 VPS9D1Q9Y2B5 631 aa13.78□□□□□ -0.2
LIG1-218ENST00000599322 MRFAP1Q9Y605 127 aa13.78□□□□□ -0.2
LIG1-218ENST00000599322 ZNF106Q9H2Y7 1883 aaKnown RBP13.78□□□□□ -0.2
LIG1-218ENST00000599322 GSAPA4D1B5 854 aa13.77□□□□□ -0.21
LIG1-218ENST00000599322 SDR42E2A6NKP2 422 aa13.77□□□□□ -0.21
LIG1-218ENST00000599322 ERVH48-1M5A8F1 160 aa13.77□□□□□ -0.21
LIG1-218ENST00000599322 ZBTB11O95625 1053 aaPredicted RBP13.77□□□□□ -0.21
LIG1-218ENST00000599322 MT-ND3P03897 115 aa13.77□□□□□ -0.21
LIG1-218ENST00000599322 MLNP12872 115 aa13.77□□□□□ -0.21
LIG1-218ENST00000599322 NELFEP18615 380 aaKnown RBP13.77□□□□□ -0.21
LIG1-218ENST00000599322 CDH3P22223 829 aa13.77□□□□□ -0.21
LIG1-218ENST00000599322 PREPP48147 710 aa13.77□□□□□ -0.21
LIG1-218ENST00000599322 HSD11B2P80365 405 aa13.77□□□□□ -0.21
LIG1-218ENST00000599322 THOC5Q13769 683 aaKnown RBP13.77□□□□□ -0.21
LIG1-218ENST00000599322 CYP1B1Q16678 543 aa13.77□□□□□ -0.21
LIG1-218ENST00000599322 PCGF5Q86SE9 256 aa13.77□□□□□ -0.21
LIG1-218ENST00000599322 PPP1R3BQ86XI6 285 aa13.77□□□□□ -0.21
LIG1-218ENST00000599322 DTX1Q86Y01 620 aa13.77□□□□□ -0.21
LIG1-218ENST00000599322 TBC1D21Q8IYX1 336 aa13.77□□□□□ -0.21
LIG1-218ENST00000599322 RAB42Q8N4Z0 105 aa13.77□□□□□ -0.21
LIG1-218ENST00000599322 ESX1Q8N693 406 aa13.77□□□□□ -0.21
LIG1-218ENST00000599322 BMPERQ8N8U9 685 aa13.77□□□□□ -0.21
LIG1-218ENST00000599322 ZNF778Q96MU6 729 aa13.77□□□□□ -0.21
LIG1-218ENST00000599322 TCF12Q99081 682 aa13.77□□□□□ -0.21
LIG1-218ENST00000599322 ARHGAP9Q9BRR9 750 aa13.77□□□□□ -0.21
LIG1-218ENST00000599322 KIFC1Q9BW19 673 aa13.77□□□□□ -0.21
LIG1-218ENST00000599322 ULBP3Q9BZM4 244 aa13.77□□□□□ -0.21
LIG1-218ENST00000599322 OR52A5Q9H2C5 316 aa13.77□□□□□ -0.21
LIG1-218ENST00000599322 TFB2MQ9H5Q4 396 aaKnown RBP13.77□□□□□ -0.21
LIG1-218ENST00000599322 SOHLH2Q9NX45 425 aa13.77□□□□□ -0.21
LIG1-218ENST00000599322 CFAP46Q8IYW2 2715 aa13.76□□□□□ -0.21
LIG1-218ENST00000599322 CTAGE9A4FU28 777 aa13.76□□□□□ -0.21
LIG1-218ENST00000599322 C2orf74A8MZ97 194 aa13.76□□□□□ -0.21
LIG1-218ENST00000599322 H3BMM5 538 aa13.76□□□□□ -0.21
LIG1-218ENST00000599322 EFSO43281 561 aa13.76□□□□□ -0.21
LIG1-218ENST00000599322 KIF1CO43896 1103 aaKnown RBP13.76□□□□□ -0.21
LIG1-218ENST00000599322 STK17BO94768 372 aa13.76□□□□□ -0.21
LIG1-218ENST00000599322 VAPBO95292 243 aa13.76□□□□□ -0.21
LIG1-218ENST00000599322 POLR2CP19387 275 aaPredicted RBP13.76□□□□□ -0.21
LIG1-218ENST00000599322 PDHA2P29803 388 aa13.76□□□□□ -0.21
LIG1-218ENST00000599322 SHMT2P34897 504 aa13.76□□□□□ -0.21
LIG1-218ENST00000599322 CRADDP78560 199 aa13.76□□□□□ -0.21
LIG1-218ENST00000599322 MC1RQ01726 317 aa13.76□□□□□ -0.21
LIG1-218ENST00000599322 HSPA14Q0VDF9 509 aa13.76□□□□□ -0.21
LIG1-218ENST00000599322 PRKG2Q13237 762 aa13.76□□□□□ -0.21
LIG1-218ENST00000599322 TUBB3Q13509 450 aa13.76□□□□□ -0.21
LIG1-218ENST00000599322 DNAJC21Q5F1R6 531 aaKnown RBP13.76□□□□□ -0.21
LIG1-218ENST00000599322 AMIGO1Q86WK6 493 aa13.76□□□□□ -0.21
LIG1-218ENST00000599322 ZNF843Q8N446 348 aa13.76□□□□□ -0.21
LIG1-218ENST00000599322 LILRA3Q8N6C8 439 aaPredicted RBP13.76□□□□□ -0.21
LIG1-218ENST00000599322 PHC3Q8NDX5 983 aa13.76□□□□□ -0.21
LIG1-218ENST00000599322 MCUQ8NE86 351 aa13.76□□□□□ -0.21
LIG1-218ENST00000599322 COG1Q8WTW3 980 aa13.76□□□□□ -0.21
LIG1-218ENST00000599322 N4BP2L2Q92802 583 aaPredicted RBP13.76□□□□□ -0.21
LIG1-218ENST00000599322 NKD1Q969G9 470 aa13.76□□□□□ -0.21
LIG1-218ENST00000599322 STAMBPL1Q96FJ0 436 aa13.76□□□□□ -0.21
LIG1-218ENST00000599322 ELMO2Q96JJ3 720 aa13.76□□□□□ -0.21
LIG1-218ENST00000599322 FOPNLQ96NB1 174 aa13.76□□□□□ -0.21
LIG1-218ENST00000599322 FCRL4Q96PJ5 515 aa13.76□□□□□ -0.21
LIG1-218ENST00000599322 NAPGQ99747 312 aaPredicted RBP13.76□□□□□ -0.21
LIG1-218ENST00000599322 MAP3K3Q99759 626 aa13.76□□□□□ -0.21
LIG1-218ENST00000599322 HGH1Q9BTY7 390 aa13.76□□□□□ -0.21
LIG1-218ENST00000599322 CCDC68Q9H2F9 335 aa13.76□□□□□ -0.21
LIG1-218ENST00000599322 KCNF1Q9H3M0 494 aa13.76□□□□□ -0.21
LIG1-218ENST00000599322 GPN2Q9H9Y4 310 aaPredicted RBP13.76□□□□□ -0.21
LIG1-218ENST00000599322 SYTL2Q9HCH5 934 aa13.76□□□□□ -0.21
LIG1-218ENST00000599322 SYBUQ9NX95 663 aa13.76□□□□□ -0.21
LIG1-218ENST00000599322 ASIC3Q9UHC3 531 aa13.76□□□□□ -0.21
LIG1-218ENST00000599322 SOX13Q9UN79 622 aa13.76□□□□□ -0.21
LIG1-218ENST00000599322 SSUH2Q9Y2M2 353 aa13.76□□□□□ -0.21
LIG1-218ENST00000599322 TDRKHQ9Y2W6 561 aaKnown RBP13.76□□□□□ -0.21
LIG1-218ENST00000599322 COL6A6A6NMZ7 2263 aa13.75□□□□□ -0.21
LIG1-218ENST00000599322 OR1I1O60431 355 aa13.75□□□□□ -0.21
LIG1-218ENST00000599322 ITGB6P18564 788 aa13.75□□□□□ -0.21
LIG1-218ENST00000599322 NMBRP28336 390 aa13.75□□□□□ -0.21
LIG1-218ENST00000599322 MAGEA6P43360 314 aa13.75□□□□□ -0.21
LIG1-218ENST00000599322 CSE1LP55060 971 aaKnown RBP13.75□□□□□ -0.21
LIG1-218ENST00000599322 ABHD18Q0P651 414 aa13.75□□□□□ -0.21
LIG1-218ENST00000599322 MAP7Q14244 749 aa13.75□□□□□ -0.21
LIG1-218ENST00000599322 KCNJ11Q14654 390 aa13.75□□□□□ -0.21
LIG1-218ENST00000599322 LARP7Q4G0J3 582 aaKnown RBP eCLIP13.75□□□□□ -0.21
LIG1-218ENST00000599322 TTC27Q6P3X3 843 aa13.75□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 27.8 ms