RNA–Protein interactions for RNA: ENST00000561326.5

USP3-219, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 4

Gene USP3, Length 543 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-219ENST00000561326 PI4KAP42356 2102 aa10.08□□□□□ -0.8
USP3-219ENST00000561326 PXNP49023 591 aaPredicted RBP10.08□□□□□ -0.8
USP3-219ENST00000561326 RPL14P50914 215 aaKnown RBP10.08□□□□□ -0.8
USP3-219ENST00000561326 PFN3P60673 137 aa10.08□□□□□ -0.8
USP3-219ENST00000561326 SETDB1Q15047 1291 aa10.08□□□□□ -0.8
USP3-219ENST00000561326 PYCR3Q53H96 274 aa10.08□□□□□ -0.8
USP3-219ENST00000561326 ARL13AQ5H913 290 aaPredicted RBP10.08□□□□□ -0.8
USP3-219ENST00000561326 TJAP1Q5JTD0 557 aa10.08□□□□□ -0.8
USP3-219ENST00000561326 ENPP7Q6UWV6 458 aa10.08□□□□□ -0.8
USP3-219ENST00000561326 UNC5DQ6UXZ4 953 aa10.08□□□□□ -0.8
USP3-219ENST00000561326 Q6ZSR6 202 aa10.08□□□□□ -0.8
USP3-219ENST00000561326 CHST15Q7LFX5 561 aaPredicted RBP10.08□□□□□ -0.8
USP3-219ENST00000561326 C11orf96Q7Z7L8 435 aa10.08□□□□□ -0.8
USP3-219ENST00000561326 VRK3Q8IV63 474 aa10.08□□□□□ -0.8
USP3-219ENST00000561326 OXR1Q8N573 874 aa10.08□□□□□ -0.8
USP3-219ENST00000561326 PDPRQ8NCN5 879 aa10.08□□□□□ -0.8
USP3-219ENST00000561326 CFAP61Q8NHU2 1237 aa10.08□□□□□ -0.8
USP3-219ENST00000561326 PIWIL2Q8TC59 973 aaKnown RBP10.08□□□□□ -0.8
USP3-219ENST00000561326 ATL1Q8WXF7 558 aa10.08□□□□□ -0.8
USP3-219ENST00000561326 SNX19Q92543 992 aa10.08□□□□□ -0.8
USP3-219ENST00000561326 KLHDC7BQ96G42 594 aa10.08□□□□□ -0.8
USP3-219ENST00000561326 SCARF2Q96GP6 870 aaPredicted RBP10.08□□□□□ -0.8
USP3-219ENST00000561326 SEC16BQ96JE7 1060 aa10.08□□□□□ -0.8
USP3-219ENST00000561326 TMEM237Q96Q45 408 aa10.08□□□□□ -0.8
USP3-219ENST00000561326 C1QTNF3Q9BXJ4 246 aa10.08□□□□□ -0.8
USP3-219ENST00000561326 VTI1BQ9UEU0 232 aa10.08□□□□□ -0.8
USP3-219ENST00000561326 PTBP2Q9UKA9 531 aaKnown RBP10.08□□□□□ -0.8
USP3-219ENST00000561326 IKZF3Q9UKT9 509 aa10.08□□□□□ -0.8
USP3-219ENST00000561326 PDE10AQ9Y233 779 aa10.08□□□□□ -0.8
USP3-219ENST00000561326 STK38LQ9Y2H1 464 aa10.08□□□□□ -0.8
USP3-219ENST00000561326 ARL2BPQ9Y2Y0 163 aa10.08□□□□□ -0.8
USP3-219ENST00000561326 ZBTB32Q9Y2Y4 487 aaPredicted RBP10.08□□□□□ -0.8
USP3-219ENST00000561326 PRKAB1Q9Y478 270 aa10.08□□□□□ -0.8
USP3-219ENST00000561326 GPSM3Q9Y4H4 160 aa10.08□□□□□ -0.8
USP3-219ENST00000561326 ANGPTL3Q9Y5C1 460 aa10.08□□□□□ -0.8
USP3-219ENST00000561326 TECTAO75443 2155 aa10.07□□□□□ -0.8
USP3-219ENST00000561326 EBAG9O00559 213 aa10.07□□□□□ -0.8
USP3-219ENST00000561326 PSIP1O75475 530 aaKnown RBP10.07□□□□□ -0.8
USP3-219ENST00000561326 TNFP01375 233 aa10.07□□□□□ -0.8
USP3-219ENST00000561326 SLC35G4P0C7Q5 338 aa10.07□□□□□ -0.8
USP3-219ENST00000561326 AOC1P19801 751 aa10.07□□□□□ -0.8
USP3-219ENST00000561326 PDHA2P29803 388 aa10.07□□□□□ -0.8
USP3-219ENST00000561326 PREPP48147 710 aa10.07□□□□□ -0.8
USP3-219ENST00000561326 PIK3CGP48736 1102 aa10.07□□□□□ -0.8
USP3-219ENST00000561326 HK3P52790 923 aa10.07□□□□□ -0.8
USP3-219ENST00000561326 RPL6Q02878 288 aaKnown RBP10.07□□□□□ -0.8
USP3-219ENST00000561326 DMPKQ09013 629 aa10.07□□□□□ -0.8
USP3-219ENST00000561326 OVGP1Q12889 678 aa10.07□□□□□ -0.8
USP3-219ENST00000561326 NFE2L1Q14494 772 aa10.07□□□□□ -0.8
USP3-219ENST00000561326 PCBP2Q15366 365 aaKnown RBP eCLIP10.07□□□□□ -0.87e-7■■■■■ 28.7
USP3-219ENST00000561326 PHKG1Q16816 387 aa10.07□□□□□ -0.8
USP3-219ENST00000561326 PPP1R3AQ16821 1122 aa10.07□□□□□ -0.8
USP3-219ENST00000561326 PLA2G4EQ3MJ16 856 aa10.07□□□□□ -0.8
USP3-219ENST00000561326 ZNF658BQ4V348 819 aaPredicted RBP10.07□□□□□ -0.8
USP3-219ENST00000561326 UNC50Q53HI1 259 aa10.07□□□□□ -0.8
USP3-219ENST00000561326 GCNT7Q6ZNI0 430 aa10.07□□□□□ -0.8
USP3-219ENST00000561326 FRMD7Q6ZUT3 714 aa10.07□□□□□ -0.8
USP3-219ENST00000561326 ABI3BPQ7Z7G0 1075 aa10.07□□□□□ -0.8
USP3-219ENST00000561326 SPNS2Q8IVW8 549 aa10.07□□□□□ -0.8
USP3-219ENST00000561326 FAM160A2Q8N612 972 aaPredicted RBP10.07□□□□□ -0.8
USP3-219ENST00000561326 TMEM145Q8NBT3 493 aa10.07□□□□□ -0.8
USP3-219ENST00000561326 FBXO15Q8NCQ5 510 aaPredicted RBP10.07□□□□□ -0.8
USP3-219ENST00000561326 RHBDF1Q96CC6 855 aa10.07□□□□□ -0.8
USP3-219ENST00000561326 FAR2Q96K12 515 aa10.07□□□□□ -0.8
USP3-219ENST00000561326 CCDC138Q96M89 665 aa10.07□□□□□ -0.8
USP3-219ENST00000561326 OR2M4Q96R27 311 aa10.07□□□□□ -0.8
USP3-219ENST00000561326 UHRF1Q96T88 793 aaPredicted RBP10.07□□□□□ -0.8
USP3-219ENST00000561326 CARS2Q9HA77 564 aaKnown RBP10.07□□□□□ -0.8
USP3-219ENST00000561326 NPHS2Q9NP85 383 aa10.07□□□□□ -0.8
USP3-219ENST00000561326 PFDN4Q9NQP4 134 aa10.07□□□□□ -0.8
USP3-219ENST00000561326 AASDHPPTQ9NRN7 309 aa10.07□□□□□ -0.8
USP3-219ENST00000561326 KLC4Q9NSK0 619 aa10.07□□□□□ -0.8
USP3-219ENST00000561326 WWOXQ9NZC7 414 aa10.07□□□□□ -0.8
USP3-219ENST00000561326 GULP1Q9UBP9 304 aa10.07□□□□□ -0.8
USP3-219ENST00000561326 KLQ9UEF7 1012 aa10.07□□□□□ -0.8
USP3-219ENST00000561326 ADAMTS6Q9UKP5 1117 aa10.07□□□□□ -0.8
USP3-219ENST00000561326 SUFUQ9UMX1 484 aa10.07□□□□□ -0.8
USP3-219ENST00000561326 DNAJC16Q9Y2G8 782 aa10.07□□□□□ -0.8
USP3-219ENST00000561326 GOLGA4Q13439 2230 aaKnown RBP10.07□□□□□ -0.8
USP3-219ENST00000561326 LRP4O75096 1905 aa10.07□□□□□ -0.8
USP3-219ENST00000561326 TP53BP1Q12888 1972 aaPredicted RBP10.06□□□□□ -0.8
USP3-219ENST00000561326 MEI4A8MW99 385 aa10.06□□□□□ -0.8
USP3-219ENST00000561326 K7ESF4 209 aa10.06□□□□□ -0.8
USP3-219ENST00000561326 LAMTOR5O43504 91 aa10.06□□□□□ -0.8
USP3-219ENST00000561326 LYPLA1O75608 230 aaPredicted RBP10.06□□□□□ -0.8
USP3-219ENST00000561326 STK16O75716 305 aa10.06□□□□□ -0.8
USP3-219ENST00000561326 SIX3O95343 332 aaPredicted RBP10.06□□□□□ -0.8
USP3-219ENST00000561326 KITP10721 976 aa10.06□□□□□ -0.8
USP3-219ENST00000561326 ACP5P13686 325 aa10.06□□□□□ -0.8
USP3-219ENST00000561326 GGT5P36269 586 aa10.06□□□□□ -0.8
USP3-219ENST00000561326 HALP42357 657 aa10.06□□□□□ -0.8
USP3-219ENST00000561326 GNPDA1P46926 289 aa10.06□□□□□ -0.8
USP3-219ENST00000561326 BLKP51451 505 aa10.06□□□□□ -0.8
USP3-219ENST00000561326 ARFIP2P53365 341 aa10.06□□□□□ -0.8
USP3-219ENST00000561326 SRP54P61011 504 aaKnown RBP10.06□□□□□ -0.8
USP3-219ENST00000561326 CLCQ05315 142 aa10.06□□□□□ -0.8
USP3-219ENST00000561326 LRP8Q14114 963 aa10.06□□□□□ -0.8
USP3-219ENST00000561326 CES4AQ5XG92 561 aa10.06□□□□□ -0.8
USP3-219ENST00000561326 RD3Q7Z3Z2 195 aa10.06□□□□□ -0.8
USP3-219ENST00000561326 PDZD3Q86UT5 571 aa10.06□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 35.5 ms