RNA–Protein interactions for RNA: ENST00000553403.1

CCDC88C-205, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 1 (best) BASIC

Gene CCDC88C, Length 1,651 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-205ENST00000553403 ERN2Q76MJ5 926 aaKnown RBP25.79■■□□□ 1.72
CCDC88C-205ENST00000553403 NLRP8Q86W28 1048 aa25.79■■□□□ 1.72
CCDC88C-205ENST00000553403 RASGEF1AQ8N9B8 481 aa25.79■■□□□ 1.72
CCDC88C-205ENST00000553403 OR9I1Q8NGQ6 314 aa25.79■■□□□ 1.72
CCDC88C-205ENST00000553403 OR2T11Q8NH01 316 aa25.79■■□□□ 1.72
CCDC88C-205ENST00000553403 TSPEARQ8WU66 669 aa25.79■■□□□ 1.72
CCDC88C-205ENST00000553403 HIST1H2AHQ96KK5 128 aa25.79■■□□□ 1.72
CCDC88C-205ENST00000553403 ANKRD27Q96NW4 1050 aa25.79■■□□□ 1.72
CCDC88C-205ENST00000553403 GAS2L1Q99501 681 aaPredicted RBP25.79■■□□□ 1.72
CCDC88C-205ENST00000553403 HIST1H2AJQ99878 128 aa25.79■■□□□ 1.72
CCDC88C-205ENST00000553403 H2AFJQ9BTM1 129 aa25.79■■□□□ 1.72
CCDC88C-205ENST00000553403 MRPL40Q9NQ50 206 aaKnown RBP25.79■■□□□ 1.72
CCDC88C-205ENST00000553403 PABPN1LA6NDY0 278 aaKnown RBP25.78■■□□□ 1.72
CCDC88C-205ENST00000553403 MRASO14807 208 aa25.78■■□□□ 1.72
CCDC88C-205ENST00000553403 KATNA1O75449 491 aa25.78■■□□□ 1.72
CCDC88C-205ENST00000553403 EBLN1P0CF75 366 aa25.78■■□□□ 1.72
CCDC88C-205ENST00000553403 EPB42P16452 691 aa25.78■■□□□ 1.72
CCDC88C-205ENST00000553403 AP1S2P56377 157 aa25.78■■□□□ 1.72
CCDC88C-205ENST00000553403 PSME3P61289 254 aa25.78■■□□□ 1.72
CCDC88C-205ENST00000553403 TMEM115Q12893 351 aaPredicted RBP25.78■■□□□ 1.72
CCDC88C-205ENST00000553403 CCNIQ14094 377 aa25.78■■□□□ 1.72
CCDC88C-205ENST00000553403 ZNF423Q2M1K9 1284 aa25.78■■□□□ 1.72
CCDC88C-205ENST00000553403 ZNF648Q5T619 568 aaPredicted RBP25.78■■□□□ 1.72
CCDC88C-205ENST00000553403 NUDT18Q6ZVK8 323 aa25.78■■□□□ 1.72
CCDC88C-205ENST00000553403 LRRC70Q7Z2Q7 622 aa25.78■■□□□ 1.72
CCDC88C-205ENST00000553403 EFCAB3Q8N7B9 438 aa25.78■■□□□ 1.72
CCDC88C-205ENST00000553403 RAB7BQ96AH8 199 aa25.78■■□□□ 1.72
CCDC88C-205ENST00000553403 CCDC124Q96CT7 223 aaKnown RBP25.78■■□□□ 1.72
CCDC88C-205ENST00000553403 NUS1Q96E22 293 aa25.78■■□□□ 1.72
CCDC88C-205ENST00000553403 HDAC8Q9BY41 377 aa25.78■■□□□ 1.72
CCDC88C-205ENST00000553403 BRINP2Q9C0B6 783 aa25.78■■□□□ 1.72
CCDC88C-205ENST00000553403 SLC32A1Q9H598 525 aa25.78■■□□□ 1.72
CCDC88C-205ENST00000553403 PRSS16Q9NQE7 514 aa25.78■■□□□ 1.72
CCDC88C-205ENST00000553403 CHD7Q9P2D1 2997 aa25.78■■□□□ 1.72
CCDC88C-205ENST00000553403 C15orf41Q9Y2V0 281 aa25.78■■□□□ 1.72
CCDC88C-205ENST00000553403 NDUFAF1Q9Y375 327 aa25.78■■□□□ 1.72
CCDC88C-205ENST00000553403 TCF20Q9UGU0 1960 aaKnown RBP25.78■■□□□ 1.72
CCDC88C-205ENST00000553403 ANKRD12Q6UB98 2062 aa25.78■■□□□ 1.72
CCDC88C-205ENST00000553403 CFLARO15519 480 aa25.77■■□□□ 1.72
CCDC88C-205ENST00000553403 ATG13O75143 517 aa25.77■■□□□ 1.72
CCDC88C-205ENST00000553403 TBX10O75333 385 aa25.77■■□□□ 1.72
CCDC88C-205ENST00000553403 SORBS2O94875 1100 aaKnown RBP25.77■■□□□ 1.72
CCDC88C-205ENST00000553403 GDF5P43026 501 aa25.77■■□□□ 1.72
CCDC88C-205ENST00000553403 PSMD8P48556 350 aa25.77■■□□□ 1.72
CCDC88C-205ENST00000553403 PTDSS1P48651 473 aaKnown RBP25.77■■□□□ 1.72
CCDC88C-205ENST00000553403 ADAM15Q13444 863 aa25.77■■□□□ 1.72
CCDC88C-205ENST00000553403 ATP6AP1LQ52LC2 224 aa25.77■■□□□ 1.72
CCDC88C-205ENST00000553403 PDCD4Q53EL6 469 aaKnown RBP25.77■■□□□ 1.72
CCDC88C-205ENST00000553403 TCHHL1Q5QJ38 904 aaPredicted RBP25.77■■□□□ 1.72
CCDC88C-205ENST00000553403 SWT1Q5T5J6 900 aaKnown RBP25.77■■□□□ 1.72
CCDC88C-205ENST00000553403 CES5AQ6NT32 575 aa25.77■■□□□ 1.72
CCDC88C-205ENST00000553403 SCIMPQ6UWF3 145 aa25.77■■□□□ 1.72
CCDC88C-205ENST00000553403 Q6ZSR9 355 aa25.77■■□□□ 1.72
CCDC88C-205ENST00000553403 DCBLD1Q8N8Z6 715 aa25.77■■□□□ 1.72
CCDC88C-205ENST00000553403 MAFAQ8NHW3 353 aaPredicted RBP25.77■■□□□ 1.72
CCDC88C-205ENST00000553403 MCOLN3Q8TDD5 553 aa25.77■■□□□ 1.72
CCDC88C-205ENST00000553403 SKA2Q8WVK7 121 aaPredicted RBP25.77■■□□□ 1.72
CCDC88C-205ENST00000553403 KXD1Q9BQD3 176 aa25.77■■□□□ 1.72
CCDC88C-205ENST00000553403 CCM2Q9BSQ5 444 aa25.77■■□□□ 1.72
CCDC88C-205ENST00000553403 HCN2Q9UL51 889 aa25.77■■□□□ 1.72
CCDC88C-205ENST00000553403 CNOT6Q9ULM6 557 aaKnown RBP25.77■■□□□ 1.72
CCDC88C-205ENST00000553403 OR2AG2A6NM03 316 aa25.77■■□□□ 1.72
CCDC88C-205ENST00000553403 RECQL5O94762 991 aaPredicted RBP25.77■■□□□ 1.72
CCDC88C-205ENST00000553403 APODP05090 189 aa25.77■■□□□ 1.72
CCDC88C-205ENST00000553403 DPP6P42658 865 aa25.77■■□□□ 1.72
CCDC88C-205ENST00000553403 DPTQ07507 201 aa25.77■■□□□ 1.72
CCDC88C-205ENST00000553403 C6orf136Q5SQH8 315 aa25.77■■□□□ 1.72
CCDC88C-205ENST00000553403 FAM46CQ5VWP2 391 aa25.77■■□□□ 1.72
CCDC88C-205ENST00000553403 IL27RAQ6UWB1 636 aa25.77■■□□□ 1.72
CCDC88C-205ENST00000553403 MBOAT1Q6ZNC8 495 aa25.77■■□□□ 1.72
CCDC88C-205ENST00000553403 PCYOX1LQ8NBM8 494 aa25.77■■□□□ 1.72
CCDC88C-205ENST00000553403 GLMNQ92990 594 aa25.77■■□□□ 1.72
CCDC88C-205ENST00000553403 ROPN1LQ96C74 230 aa25.77■■□□□ 1.72
CCDC88C-205ENST00000553403 CHFRQ96EP1 664 aa25.77■■□□□ 1.72
CCDC88C-205ENST00000553403 SLC29A3Q9BZD2 475 aa25.77■■□□□ 1.72
CCDC88C-205ENST00000553403 S1PR5Q9H228 398 aa25.77■■□□□ 1.72
CCDC88C-205ENST00000553403 PCDHGA7Q9Y5G6 932 aa25.77■■□□□ 1.72
CCDC88C-205ENST00000553403 SOD1P00441 154 aa25.76■■□□□ 1.71
CCDC88C-205ENST00000553403 LAMP2P13473 410 aa25.76■■□□□ 1.71
CCDC88C-205ENST00000553403 C6P13671 934 aa25.76■■□□□ 1.71
CCDC88C-205ENST00000553403 ME2P23368 584 aa25.76■■□□□ 1.71
CCDC88C-205ENST00000553403 HTR6P50406 440 aa25.76■■□□□ 1.71
CCDC88C-205ENST00000553403 THOP1P52888 689 aa25.76■■□□□ 1.71
CCDC88C-205ENST00000553403 CTSCP53634 463 aa25.76■■□□□ 1.71
CCDC88C-205ENST00000553403 ITPRIPL2Q3MIP1 535 aa25.76■■□□□ 1.71
CCDC88C-205ENST00000553403 COQ5Q5HYK3 327 aa25.76■■□□□ 1.71
CCDC88C-205ENST00000553403 MMAAQ8IVH4 418 aaKnown RBP25.76■■□□□ 1.71
CCDC88C-205ENST00000553403 BEND7Q8N7W2 519 aaPredicted RBP25.76■■□□□ 1.71
CCDC88C-205ENST00000553403 SNX31Q8N9S9 440 aa25.76■■□□□ 1.71
CCDC88C-205ENST00000553403 KCNV2Q8TDN2 545 aa25.76■■□□□ 1.71
CCDC88C-205ENST00000553403 ZCCHC2Q9C0B9 1178 aaKnown RBP25.76■■□□□ 1.71
CCDC88C-205ENST00000553403 S100A14Q9HCY8 104 aa25.76■■□□□ 1.71
CCDC88C-205ENST00000553403 BCAP29Q9UHQ4 241 aa25.76■■□□□ 1.71
CCDC88C-205ENST00000553403 COQ6Q9Y2Z9 468 aa25.76■■□□□ 1.71
CCDC88C-205ENST00000553403 CHD9Q3L8U1 2897 aa25.75■■□□□ 1.71
CCDC88C-205ENST00000553403 TSPAN6O43657 245 aa25.75■■□□□ 1.71
CCDC88C-205ENST00000553403 LZTS3O60299 673 aaPredicted RBP25.75■■□□□ 1.71
CCDC88C-205ENST00000553403 EPHX1P07099 455 aa25.75■■□□□ 1.71
CCDC88C-205ENST00000553403 GSTM1P09488 218 aa25.75■■□□□ 1.71
CCDC88C-205ENST00000553403 ANPEPP15144 967 aa25.75■■□□□ 1.71
Retrieved 100 of 20,778 RNA–protein pairs in 127.1 ms